Cow genome map

Conread name: rpfco0110_d5.y1

Conread position: 1-387
Cow position: chr17:27977958-27978356 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 29

Conread position: 1-388
Cow position: chr17:29075505-29075121 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 294
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 28, 16

Conread position: 2-182
Cow position: chr17:18124098-18123912 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 148
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 45, 0

Conread position: 2-193
Cow position: chr17:8994405-8994602 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 160
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 45, 0

Conread position: 2-205
Cow position: chr17:9073987-9074195 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 165
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 45, 192

Conread position: 2-206
Cow position: chr17:15719180-15719389 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 168
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 45, 192

Conread position: 2-234
Cow position: chr17:11785721-11785959 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-234
Cow position: chr17:38917191-38916953 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-236
Cow position: chr17:18722041-18721801 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 2-239
Cow position: chr17:14871508-14871763 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr17:183984-184228 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr17:731651-731410 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 78

Conread position: 2-240
Cow position: chr17:1969988-1970232 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr17:4481045-4480801 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr17:5043748-5043512 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 59

Conread position: 2-240
Cow position: chr17:6071372-6071616 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr17:6262694-6262937 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 2-240
Cow position: chr17:14029508-14029265 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 183

Conread position: 2-240
Cow position: chr17:14239906-14240150 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr17:14899560-14899803 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 124

Conread position: 2-240
Cow position: chr17:15117654-15117898 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr17:15229195-15228954 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 129

Conread position: 2-240
Cow position: chr17:15325398-15325155 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr17:15709156-15708912 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr17:15853567-15853815 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 2-240
Cow position: chr17:16855257-16855016 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 97

Conread position: 2-240
Cow position: chr17:19215557-19215314 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 170

Conread position: 2-240
Cow position: chr17:20390611-20390855 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr17:20545974-20546218 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr17:22106798-22106554 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 2-240
Cow position: chr17:22562983-22563226 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 181
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 58, 0

Conread position: 2-240
Cow position: chr17:24027146-24026902 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr17:24785027-24785271 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr17:25739141-25739377 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 45, 141

Conread position: 2-240
Cow position: chr17:26829906-26829663 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 97

Conread position: 2-240
Cow position: chr17:29825124-29824880 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 2-240
Cow position: chr17:30182743-30182499 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr17:34236414-34236170 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr17:40810587-40810832 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr17:44641633-44641389 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-241
Cow position: chr17:6122620-6122865 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-241
Cow position: chr17:18100238-18099992 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-241
Cow position: chr17:20033276-20033518 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 105

Conread position: 2-363
Cow position: chr17:30270-30647 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 289

Conread position: 2-367
Cow position: chr17:15808824-15809218 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-367
Cow position: chr17:23321583-23321189 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 308

Conread position: 2-367
Cow position: chr17:27791936-27791557 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 89

Conread position: 2-375
Cow position: chr17:22774599-22774223 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 244

Conread position: 2-378
Cow position: chr17:2265032-2265429 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 252

Conread position: 2-382
Cow position: chr17:16870424-16870049 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 60

Conread position: 2-383
Cow position: chr17:4210766-4211177 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 299

Conread position: 2-383
Cow position: chr17:17221154-17221561 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 186

Conread position: 2-384
Cow position: chr17:15307539-15307164 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 64

Conread position: 2-385
Cow position: chr17:15140501-15140091 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 120

Conread position: 2-385
Cow position: chr17:15374249-15374642 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 162

Conread position: 2-385
Cow position: chr17:21770517-21770930 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 258

Conread position: 2-387
Cow position: chr17:33791944-33792324 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 272
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 69, 30

Conread position: 2-388
Cow position: chr17:1569379-1568967 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 2-388
Cow position: chr17:2838870-2839275 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 197

Conread position: 2-388
Cow position: chr17:13936297-13935894 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 263
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 45, 36

Conread position: 2-388
Cow position: chr17:16118616-16118212 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 142

Conread position: 2-388
Cow position: chr17:38828758-38829134 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 274
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 47, 124

Conread position: 2-389
Cow position: chr17:4084906-4085320 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 195

Conread position: 2-389
Cow position: chr17:20210046-20209627 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 282
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 47, 106

Conread position: 2-389
Cow position: chr17:21766734-21767147 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 298

Conread position: 2-390
Cow position: chr17:1883097-1883497 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 281
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 47, 139

Conread position: 2-390
Cow position: chr17:11084287-11083882 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 63

Conread position: 3-240
Cow position: chr17:1311924-1311681 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 3-379
Cow position: chr17:20054975-20055366 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 273
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 46, 168

Conread position: 4-183
Cow position: chr17:1706258-1706444 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 39, 0

Conread position: 4-240
Cow position: chr17:15328120-15328362 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 4-367
Cow position: chr17:452691-453077 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 299

Conread position: 4-383
Cow position: chr17:20094317-20093912 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 105

Conread position: 7-240
Cow position: chr17:11381158-11381394 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 169

Conread position: 26-367
Cow position: chr17:15438654-15439022 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 267
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 23, 232

Conread position: 55-385
Cow position: chr17:3237323-3237659 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 230
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 15, 116

Conread position: 62-388
Cow position: chr17:16447576-16447229 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 229

Conread position: 69-367
Cow position: chr17:17957514-17957828 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 109

Conread position: 74-385
Cow position: chr17:19234698-19235016 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 222
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 146, 107

Conread position: 89-361
Cow position: chr17:2151110-2151390 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 153, 133

Conread position: 92-384
Cow position: chr17:14213083-14212771 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 231
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 120, 27

Conread position: 123-367
Cow position: chr17:6955612-6955870 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 195
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 115, 52

Conread position: 126-385
Cow position: chr17:254086-254347 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 188
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 185, 110

Conread position: 134-390
Cow position: chr17:1672275-1672551 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 198
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 76, 69

Conread position: 149-384
Cow position: chr17:11338159-11337916 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 139

Conread position: 170-390
Cow position: chr17:1709388-1709606 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 152
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 92, 14

Conread position: 226-388
Cow position: chr17:22134285-22134449 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 79, 47

Conread position: 229-388
Cow position: chr17:36747430-36747276 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 141, 41

Conread position: 229-390
Cow position: chr17:14871774-14871936 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 82, 44

Conread position: 236-366
Cow position: chr17:16505649-16505517 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 75, 37

Conread position: 236-377
Cow position: chr17:38991851-38991992 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 75, 37

Conread position: 238-375
Cow position: chr17:37699605-37699471 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 132, 35

Conread position: 244-388
Cow position: chr17:29471543-29471690 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 41, 29

Conread position: 250-386
Cow position: chr17:24876886-24876751 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 33

Show alignments to all cow chromosomes.