Cow genome map

Conread name: rpfco0110_d5.y1

Conread position: 2-144
Cow position: chr18:11271783-11271635 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 2-152
Cow position: chr18:43472538-43472382 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 45, 0

Conread position: 2-168
Cow position: chr18:41838052-41837880 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 139
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 45, 0

Conread position: 2-180
Cow position: chr18:10222091-10222274 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 146
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 56, 0

Conread position: 2-184
Cow position: chr18:4953794-4953984 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 152
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 47, 0

Conread position: 2-206
Cow position: chr18:27834722-27834512 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 160
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 45, 0

Conread position: 2-208
Cow position: chr18:16391151-16390944 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 45, 174

Conread position: 2-224
Cow position: chr18:14152252-14152479 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 43, 111

Conread position: 2-228
Cow position: chr18:43621665-43621433 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-238
Cow position: chr18:29863544-29863302 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 179

Conread position: 2-239
Cow position: chr18:16173552-16173310 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 118

Conread position: 2-240
Cow position: chr18:603404-603160 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr18:5202549-5202793 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr18:9981680-9981924 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr18:11869547-11869791 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr18:13269970-13270214 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr18:14419038-14419281 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 110

Conread position: 2-240
Cow position: chr18:19355575-19355817 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 161

Conread position: 2-240
Cow position: chr18:21811040-21811284 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr18:23701737-23701494 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr18:23802084-23802327 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 178

Conread position: 2-240
Cow position: chr18:24037783-24037542 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 87

Conread position: 2-240
Cow position: chr18:24211997-24212241 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr18:24413356-24413599 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 176

Conread position: 2-240
Cow position: chr18:24619489-24619733 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr18:27989817-27990061 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 179

Conread position: 2-240
Cow position: chr18:27994924-27994680 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr18:29071482-29071725 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 117

Conread position: 2-240
Cow position: chr18:29240146-29240391 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr18:32164871-32164627 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr18:32437041-32436797 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr18:32656631-32656875 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr18:35293181-35293420 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 104

Conread position: 2-240
Cow position: chr18:35444308-35444064 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr18:37583398-37583153 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr18:37732750-37732993 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 202

Conread position: 2-240
Cow position: chr18:40195173-40195417 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr18:51459781-51459537 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr18:51602605-51602361 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr18:52630197-52629954 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 150

Conread position: 2-240
Cow position: chr18:55554311-55554555 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-241
Cow position: chr18:36776336-36776582 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-243
Cow position: chr18:25867126-25866881 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 105

Conread position: 2-351
Cow position: chr18:40758349-40757995 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 222

Conread position: 2-367
Cow position: chr18:23688232-23688626 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 298

Conread position: 2-367
Cow position: chr18:35296228-35296599 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 225

Conread position: 2-367
Cow position: chr18:47744813-47745207 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 298

Conread position: 2-367
Cow position: chr18:50093384-50092990 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 258

Conread position: 2-367
Cow position: chr18:54032778-54033162 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 286

Conread position: 2-367
Cow position: chr18:54066003-54065620 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 287

Conread position: 2-368
Cow position: chr18:51663236-51663629 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 296

Conread position: 2-372
Cow position: chr18:8965375-8965753 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 124

Conread position: 2-376
Cow position: chr18:36122776-36122398 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 26

Conread position: 2-377
Cow position: chr18:15171922-15172312 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 276
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 47, 103

Conread position: 2-378
Cow position: chr18:52574176-52574565 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 150

Conread position: 2-384
Cow position: chr18:1145482-1145079 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 207

Conread position: 2-385
Cow position: chr18:17670897-17670500 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 280
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 45, 117

Conread position: 2-385
Cow position: chr18:27539493-27539903 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 105

Conread position: 2-388
Cow position: chr18:6733902-6733489 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 179

Conread position: 2-388
Cow position: chr18:10896263-10896664 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 108

Conread position: 2-388
Cow position: chr18:17943600-17943988 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 255
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 62, 185

Conread position: 2-388
Cow position: chr18:25354578-25354997 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 105

Conread position: 2-388
Cow position: chr18:29767496-29767906 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 287
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 56, 122

Conread position: 2-388
Cow position: chr18:33271698-33272110 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 211

Conread position: 2-389
Cow position: chr18:51697706-51698115 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 291

Conread position: 2-390
Cow position: chr18:19310227-19310628 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 341

Conread position: 2-390
Cow position: chr18:37509029-37509438 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 2-390
Cow position: chr18:52655867-52656270 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 286

Conread position: 4-367
Cow position: chr18:28928527-28928151 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 300

Conread position: 10-240
Cow position: chr18:46874392-46874154 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 14-388
Cow position: chr18:17335663-17335265 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 288

Conread position: 27-367
Cow position: chr18:16463556-16463192 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 268

Conread position: 59-383
Cow position: chr18:15486056-15485731 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 226
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 12, 27

Conread position: 62-391
Cow position: chr18:51272988-51272660 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 195

Conread position: 63-388
Cow position: chr18:23659769-23659419 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 233

Conread position: 69-376
Cow position: chr18:26243325-26242996 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 242
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 122, 225

Conread position: 69-383
Cow position: chr18:33522360-33522689 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 223

Conread position: 69-386
Cow position: chr18:48547972-48548295 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 230
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 28, 39

Conread position: 70-390
Cow position: chr18:89305-89629 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 65

Conread position: 72-378
Cow position: chr18:54274129-54274432 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 210
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 78, 31

Conread position: 80-367
Cow position: chr18:10291875-10292185 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 214

Conread position: 147-383
Cow position: chr18:30035499-30035258 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 161
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 59, 128

Conread position: 149-367
Cow position: chr18:3189977-3190198 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 90, 42

Conread position: 153-384
Cow position: chr18:52697871-52698102 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 158
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 151, 72

Conread position: 156-377
Cow position: chr18:10221464-10221221 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 179
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 58, 138

Conread position: 160-389
Cow position: chr18:26335924-26335685 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 174
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 44, 85

Conread position: 162-388
Cow position: chr18:36908616-36908384 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 162
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 74, 114

Conread position: 162-388
Cow position: chr18:36913145-36912913 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 161
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 74, 114

Conread position: 174-383
Cow position: chr18:39002872-39002653 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 71, 0

Conread position: 225-368
Cow position: chr18:29240631-29240776 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 86, 48

Conread position: 236-367
Cow position: chr18:19461601-19461734 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 75, 37

Conread position: 236-387
Cow position: chr18:33607556-33607703 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 134, 37

Conread position: 238-388
Cow position: chr18:1022702-1022546 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 8, 38

Conread position: 247-381
Cow position: chr18:56483331-56483195 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 64, 26

Show alignments to all cow chromosomes.