Cow genome map
| Conread name: | rpfco0110_d5.y1 |
| Conread position: | 2-129 |
| Cow position: | chr19:10864643-10864510 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-137 |
| Cow position: | chr19:22390986-22391126 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 45, 131 |
| Conread position: | 2-146 |
| Cow position: | chr19:890130-889980 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-153 |
| Cow position: | chr19:12651802-12651958 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 123 |
| Conread position: | 2-167 |
| Cow position: | chr19:10194708-10194874 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-180 |
| Cow position: | chr19:7293174-7292990 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-185 |
| Cow position: | chr19:39696342-39696521 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 45, 57 |
| Conread position: | 2-197 |
| Cow position: | chr19:1354216-1354015 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-213 |
| Cow position: | chr19:1579177-1579394 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-218 |
| Cow position: | chr19:40834205-40833984 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 97 |
| Conread position: | 2-238 |
| Cow position: | chr19:19388900-19389142 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-240 |
| Cow position: | chr19:207566-207810 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 2-240 |
| Cow position: | chr19:730924-730681 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 106 |
| Conread position: | 2-240 |
| Cow position: | chr19:2270235-2269991 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-240 |
| Cow position: | chr19:10613294-10613538 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-240 |
| Cow position: | chr19:12776182-12776420 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 95 |
| Conread position: | 2-240 |
| Cow position: | chr19:16478800-16478557 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 192 |
| Conread position: | 2-240 |
| Cow position: | chr19:20611400-20611644 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-240 |
| Cow position: | chr19:22512311-22512555 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 2-240 |
| Cow position: | chr19:24734209-24734453 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-240 |
| Cow position: | chr19:29393408-29393652 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-240 |
| Cow position: | chr19:30037841-30037597 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-240 |
| Cow position: | chr19:33527913-33528157 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-240 |
| Cow position: | chr19:37844713-37844470 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 192 |
| Conread position: | 2-240 |
| Cow position: | chr19:42581240-42581005 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 49, 198 |
| Conread position: | 2-240 |
| Cow position: | chr19:43148647-43148891 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 2-240 |
| Cow position: | chr19:55164591-55164347 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-252 |
| Cow position: | chr19:12553166-12552910 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-341 |
| Cow position: | chr19:197079-197431 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 45, 84 |
| Conread position: | 2-364 |
| Cow position: | chr19:40016520-40016131 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 97 |
| Conread position: | 2-366 |
| Cow position: | chr19:4388649-4389039 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-367 |
| Cow position: | chr19:776580-776972 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 124 |
| Conread position: | 2-367 |
| Cow position: | chr19:7345100-7345478 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 285 |
| Conread position: | 2-367 |
| Cow position: | chr19:7480868-7480483 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-367 |
| Cow position: | chr19:8206931-8206555 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 286 |
| Conread position: | 2-367 |
| Cow position: | chr19:28596441-28596836 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 299 |
| Conread position: | 2-367 |
| Cow position: | chr19:30515961-30515582 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 283 |
| Conread position: | 2-367 |
| Cow position: | chr19:55377961-55378353 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 295 |
| Conread position: | 2-373 |
| Cow position: | chr19:33119658-33119259 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 298 |
| Conread position: | 2-376 |
| Cow position: | chr19:28449892-28450291 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 143 |
| Conread position: | 2-376 |
| Cow position: | chr19:45464212-45464602 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 286 |
| Conread position: | 2-377 |
| Cow position: | chr19:5902093-5902496 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 298 |
| Conread position: | 2-382 |
| Cow position: | chr19:5044608-5044221 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 102 |
| Conread position: | 2-385 |
| Cow position: | chr19:15070377-15070766 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 268 |
| Conread position: | 2-388 |
| Cow position: | chr19:36188790-36189180 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 65 |
| Conread position: | 2-389 |
| Cow position: | chr19:344450-344859 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 377 |
| Conread position: | 2-390 |
| Cow position: | chr19:28795253-28794849 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 199 |
| Conread position: | 3-213 |
| Cow position: | chr19:21337765-21337549 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 3-225 |
| Cow position: | chr19:39750290-39750513 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 45, 117 |
| Conread position: | 3-240 |
| Cow position: | chr19:374643-374404 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 44, 108 |
| Conread position: | 4-240 |
| Cow position: | chr19:30517871-30518114 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 4-240 |
| Cow position: | chr19:55843072-55843314 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 179 |
| Conread position: | 4-367 |
| Cow position: | chr19:33573649-33573260 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 291 |
| Conread position: | 6-368 |
| Cow position: | chr19:34656046-34655693 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 42, 105 |
| Conread position: | 8-240 |
| Cow position: | chr19:33675146-33674914 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 39, 140 |
| Conread position: | 18-388 |
| Cow position: | chr19:48477656-48478044 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 187 |
| Conread position: | 23-383 |
| Cow position: | chr19:33624665-33625049 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 329 |
| Conread position: | 59-377 |
| Cow position: | chr19:55421176-55421517 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 59-388 |
| Cow position: | chr19:42866602-42866947 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 11, 238 |
| Conread position: | 69-367 |
| Cow position: | chr19:27082269-27081955 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 208 |
| Conread position: | 69-383 |
| Cow position: | chr19:19172804-19173136 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 149, 19 |
| Conread position: | 80-388 |
| Cow position: | chr19:20672430-20672113 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 133, 22 |
| Conread position: | 127-388 |
| Cow position: | chr19:12209737-12209448 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 67, 168 |
| Conread position: | 136-388 |
| Cow position: | chr19:35843062-35843334 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 104, 39 |
| Conread position: | 171-367 |
| Cow position: | chr19:23488002-23488219 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 69, 130 |
| Conread position: | 230-375 |
| Cow position: | chr19:29366849-29366997 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 81, 43 |
| Conread position: | 230-375 |
| Cow position: | chr19:29624357-29624505 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 81, 43 |
| Conread position: | 230-391 |
| Cow position: | chr19:3221433-3221594 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 81, 43 |
| Conread position: | 244-381 |
| Cow position: | chr19:14528165-14528303 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 76, 29 |
| Conread position: | 247-383 |
| Cow position: | chr19:267444-267581 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 255-383 |
| Cow position: | chr19:46873679-46873548 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 56, 18 |
Show alignments to all cow chromosomes.