Cow genome map

Conread name: rpfco0110_d5.y1

Conread position: 1-240
Cow position: chr21:44842-45086 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 126

Conread position: 2-155
Cow position: chr21:27522758-27522604 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 129
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 46, 106

Conread position: 2-165
Cow position: chr21:1285116-1284950 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 45, 112

Conread position: 2-225
Cow position: chr21:13112252-13112025 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 148

Conread position: 2-240
Cow position: chr21:449308-449551 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 2-240
Cow position: chr21:1195678-1195921 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 182

Conread position: 2-240
Cow position: chr21:2513989-2514234 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr21:2538008-2537774 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 44, 104

Conread position: 2-240
Cow position: chr21:2665023-2664782 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 184
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 45, 123

Conread position: 2-240
Cow position: chr21:3804641-3804397 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 2-240
Cow position: chr21:5010332-5010087 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 187
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 45, 217

Conread position: 2-240
Cow position: chr21:7048043-7047797 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 225

Conread position: 2-240
Cow position: chr21:7062463-7062219 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr21:10570426-10570670 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr21:10853404-10853648 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr21:11405741-11405497 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr21:13162577-13162817 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 139

Conread position: 2-240
Cow position: chr21:17143828-17144071 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 118

Conread position: 2-240
Cow position: chr21:22719956-22719714 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 107

Conread position: 2-240
Cow position: chr21:27066460-27066216 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr21:27343260-27343015 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 135

Conread position: 2-240
Cow position: chr21:30056565-30056321 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr21:30297617-30297862 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr21:30654714-30654952 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 185

Conread position: 2-240
Cow position: chr21:31513129-31512887 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 153

Conread position: 2-240
Cow position: chr21:34180958-34180714 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 2-240
Cow position: chr21:35024502-35024746 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr21:36376129-36376373 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr21:36535069-36534825 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr21:39428541-39428785 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr21:39470626-39470381 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr21:41796582-41796338 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr21:47428482-47428726 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr21:47648479-47648723 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr21:48274058-48273814 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-243
Cow position: chr21:26757590-26757337 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 193
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 45, 0

Conread position: 2-250
Cow position: chr21:44762822-44762568 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 190
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 45, 0

Conread position: 2-365
Cow position: chr21:26634088-26633699 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 106

Conread position: 2-366
Cow position: chr21:30564893-30565277 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 179

Conread position: 2-367
Cow position: chr21:5642697-5642305 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 294

Conread position: 2-367
Cow position: chr21:6966333-6965939 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 258

Conread position: 2-367
Cow position: chr21:27148412-27148019 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 257

Conread position: 2-367
Cow position: chr21:32396881-32396493 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 161

Conread position: 2-367
Cow position: chr21:33710360-33709967 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 297

Conread position: 2-367
Cow position: chr21:37923326-37923709 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-367
Cow position: chr21:42916933-42917326 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 117

Conread position: 2-372
Cow position: chr21:30966804-30966405 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 298

Conread position: 2-377
Cow position: chr21:4898822-4898422 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 136

Conread position: 2-383
Cow position: chr21:5595957-5596340 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 267
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 47, 24

Conread position: 2-383
Cow position: chr21:21217302-21216925 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 41

Conread position: 2-383
Cow position: chr21:26699527-26699118 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 209

Conread position: 2-384
Cow position: chr21:48235158-48234765 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 276
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 62, 106

Conread position: 2-385
Cow position: chr21:4036116-4035730 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 56

Conread position: 2-385
Cow position: chr21:11509080-11509491 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 258

Conread position: 2-385
Cow position: chr21:16890703-16890290 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 300

Conread position: 2-386
Cow position: chr21:12802946-12802559 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 265
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 45, 127

Conread position: 2-386
Cow position: chr21:44862427-44862042 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 224

Conread position: 2-388
Cow position: chr21:42856-43257 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 127

Conread position: 2-388
Cow position: chr21:4567132-4567507 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 257
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 8, 94

Conread position: 2-388
Cow position: chr21:6622964-6623366 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 81

Conread position: 2-388
Cow position: chr21:23784245-23783849 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 265
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 67, 174

Conread position: 2-388
Cow position: chr21:27125578-27125163 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 158

Conread position: 2-390
Cow position: chr21:2878696-2878285 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 157

Conread position: 2-390
Cow position: chr21:4559929-4559519 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 104

Conread position: 2-390
Cow position: chr21:13299961-13300373 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 186

Conread position: 2-390
Cow position: chr21:27287121-27287531 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 133

Conread position: 2-390
Cow position: chr21:27608561-27608147 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 294

Conread position: 2-390
Cow position: chr21:48530307-48530721 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 3-240
Cow position: chr21:33317226-33316983 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 3-367
Cow position: chr21:19351721-19351328 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 297

Conread position: 4-240
Cow position: chr21:18284952-18285189 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 85

Conread position: 4-240
Cow position: chr21:24298066-24297808 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 187
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 40, 0

Conread position: 4-240
Cow position: chr21:34823317-34823559 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 4-243
Cow position: chr21:24826993-24826748 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 4-383
Cow position: chr21:33420835-33420426 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 299

Conread position: 5-182
Cow position: chr21:16277419-16277600 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 140
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 58, 0

Conread position: 6-240
Cow position: chr21:1686035-1685802 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 166
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 42, 134

Conread position: 6-388
Cow position: chr21:4079186-4079577 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 188

Conread position: 9-388
Cow position: chr21:9895509-9895912 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 85

Conread position: 10-383
Cow position: chr21:27262844-27263233 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 272
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 37, 25

Conread position: 10-386
Cow position: chr21:26615724-26615336 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 262
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 38, 115

Conread position: 13-240
Cow position: chr21:4586528-4586296 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 68

Conread position: 14-388
Cow position: chr21:14726847-14727239 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 265
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 57, 277

Conread position: 36-383
Cow position: chr21:37298333-37298690 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 254
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 12, 97

Conread position: 59-366
Cow position: chr21:3046541-3046868 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 61

Conread position: 59-377
Cow position: chr21:37323598-37323259 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 231
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 12, 114

Conread position: 59-388
Cow position: chr21:20263445-20263121 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 228
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 12, 51

Conread position: 62-383
Cow position: chr21:32534043-32534371 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 62

Conread position: 90-390
Cow position: chr21:4188769-4189092 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 234
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 51, 99

Conread position: 97-383
Cow position: chr21:13437369-13437650 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 195
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 204, 130

Conread position: 104-383
Cow position: chr21:3766520-3766220 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 210
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 51, 187

Conread position: 110-367
Cow position: chr21:19627454-19627175 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 207
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 93, 183

Conread position: 117-388
Cow position: chr21:25986677-25986970 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 223
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 20, 76

Conread position: 151-390
Cow position: chr21:8071802-8071545 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 184
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 67, 12

Conread position: 176-367
Cow position: chr21:29423382-29423594 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 56, 116

Conread position: 236-367
Cow position: chr21:23329943-23329810 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 75, 37

Conread position: 236-367
Cow position: chr21:36892832-36892699 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 75, 37

Conread position: 236-386
Cow position: chr21:28476702-28476854 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 75, 37

Conread position: 244-388
Cow position: chr21:16277808-16277957 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 11, 31

Conread position: 244-388
Cow position: chr21:24297657-24297518 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 126, 58

Conread position: 245-390
Cow position: chr21:46974323-46974178 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 10, 30

Conread position: 250-367
Cow position: chr21:26628182-26628301 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 61, 23

Show alignments to all cow chromosomes.