Cow genome map

Conread name: rpfco0110_d5.y1

Conread position: 1-240
Cow position: chr23:39744822-39745067 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 1-367
Cow position: chr23:2320985-2320594 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 205

Conread position: 1-388
Cow position: chr23:7359419-7359831 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 297

Conread position: 1-390
Cow position: chr23:2791806-2791398 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 387

Conread position: 2-161
Cow position: chr23:5871604-5871439 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 2-165
Cow position: chr23:19317447-19317616 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 133
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 45, 0

Conread position: 2-182
Cow position: chr23:670850-671036 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 148
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 45, 0

Conread position: 2-182
Cow position: chr23:8705823-8706006 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 45, 94

Conread position: 2-182
Cow position: chr23:39388622-39388808 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 45, 0

Conread position: 2-183
Cow position: chr23:4081104-4081291 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 147
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 45, 0

Conread position: 2-194
Cow position: chr23:1248568-1248370 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 158
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 45, 0

Conread position: 2-211
Cow position: chr23:14790443-14790658 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-212
Cow position: chr23:29442136-29441921 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 148

Conread position: 2-224
Cow position: chr23:616306-616082 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 46, 0

Conread position: 2-240
Cow position: chr23:1048914-1048670 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 2-240
Cow position: chr23:1959089-1959330 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 104

Conread position: 2-240
Cow position: chr23:2024125-2023881 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:2409253-2409008 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:2720415-2720660 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 106

Conread position: 2-240
Cow position: chr23:2760858-2761102 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 2-240
Cow position: chr23:3285718-3285962 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:3301815-3302058 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 197

Conread position: 2-240
Cow position: chr23:3417369-3417125 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:3709364-3709607 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 241

Conread position: 2-240
Cow position: chr23:4265656-4265413 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 192

Conread position: 2-240
Cow position: chr23:4532738-4532494 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:4891655-4891899 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 179

Conread position: 2-240
Cow position: chr23:5396621-5396377 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:5440877-5441121 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:10679874-10679630 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:10937343-10937099 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:11079343-11079587 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:11712708-11712464 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:11781743-11781988 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:15528546-15528790 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:17845957-17846201 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:20153262-20153018 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:20540780-20541024 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 2-240
Cow position: chr23:21008645-21008401 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:22169849-22170111 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 198
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:24119514-24119758 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:25351319-25351563 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:27402095-27402340 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:28084134-28083890 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:28221661-28221904 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:28987310-28987546 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 113

Conread position: 2-240
Cow position: chr23:29042742-29042986 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:31605387-31605631 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:31703854-31704098 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:37199555-37199310 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr23:41143400-41143644 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-328
Cow position: chr23:14216264-14215912 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 130

Conread position: 2-328
Cow position: chr23:32008417-32008067 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 293

Conread position: 2-365
Cow position: chr23:609688-610058 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 264

Conread position: 2-366
Cow position: chr23:2722723-2723093 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 135
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 45, 0

Conread position: 2-367
Cow position: chr23:771532-771138 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 298

Conread position: 2-386
Cow position: chr23:11127973-11128393 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-386
Cow position: chr23:14959989-14959582 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 187

Conread position: 2-387
Cow position: chr23:2180887-2180473 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 298

Conread position: 2-388
Cow position: chr23:1326354-1325940 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 295

Conread position: 2-388
Cow position: chr23:14840213-14839813 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 270
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 47, 18

Conread position: 2-388
Cow position: chr23:14970992-14970579 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 246

Conread position: 2-389
Cow position: chr23:4516500-4516908 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 292

Conread position: 2-390
Cow position: chr23:4436592-4436993 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 174

Conread position: 2-390
Cow position: chr23:15215875-15215462 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 179

Conread position: 2-390
Cow position: chr23:16496311-16495901 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 290

Conread position: 2-390
Cow position: chr23:22144349-22143935 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 185

Conread position: 3-384
Cow position: chr23:6222813-6223187 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 258
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 67, 215

Conread position: 4-208
Cow position: chr23:19492519-19492730 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 162
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 39, 0

Conread position: 4-240
Cow position: chr23:30634633-30634391 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 4-388
Cow position: chr23:1338520-1338118 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 151

Conread position: 8-388
Cow position: chr23:20171232-20170830 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 280
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 39, 162

Conread position: 23-383
Cow position: chr23:38583904-38584284 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 262
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 47, 271

Conread position: 23-388
Cow position: chr23:16999427-16999815 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 270
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 26, 66

Conread position: 59-390
Cow position: chr23:19637860-19637520 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 241
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 11, 73

Conread position: 69-366
Cow position: chr23:954764-954448 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 221

Conread position: 71-383
Cow position: chr23:21277600-21277265 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 247
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 86, 144

Conread position: 112-388
Cow position: chr23:29448173-29447875 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 223
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 73, 142

Conread position: 158-367
Cow position: chr23:27312966-27313198 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 49, 145

Conread position: 172-377
Cow position: chr23:671307-671534 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 122

Conread position: 236-387
Cow position: chr23:8707611-8707763 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 75, 37

Conread position: 236-387
Cow position: chr23:29446726-29446579 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 244-386
Cow position: chr23:36308439-36308579 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 11, 31

Conread position: 246-367
Cow position: chr23:40773558-40773681 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 65, 27

Conread position: 250-388
Cow position: chr23:1535357-1535498 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 56, 24

Show alignments to all cow chromosomes.