Cow genome map
Conread name: | rpfco0110_d5.y1 |
Conread position: | 1-240 |
Cow position: | chr23:39744822-39745067 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 0 |
Conread position: | 1-367 |
Cow position: | chr23:2320985-2320594 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 205 |
Conread position: | 1-388 |
Cow position: | chr23:7359419-7359831 (view UCSC Genome Browser custom track) |
Alignm length: | 414 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 297 |
Conread position: | 1-390 |
Cow position: | chr23:2791806-2791398 (view UCSC Genome Browser custom track) |
Alignm length: | 410 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 387 |
Conread position: | 2-161 |
Cow position: | chr23:5871604-5871439 (view UCSC Genome Browser custom track) |
Alignm length: | 166 |
Alignm identity: | 121 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 44, 0 |
Conread position: | 2-165 |
Cow position: | chr23:19317447-19317616 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 133 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-182 |
Cow position: | chr23:670850-671036 (view UCSC Genome Browser custom track) |
Alignm length: | 187 |
Alignm identity: | 148 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-182 |
Cow position: | chr23:8705823-8706006 (view UCSC Genome Browser custom track) |
Alignm length: | 187 |
Alignm identity: | 142 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 45, 94 |
Conread position: | 2-182 |
Cow position: | chr23:39388622-39388808 (view UCSC Genome Browser custom track) |
Alignm length: | 187 |
Alignm identity: | 141 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-183 |
Cow position: | chr23:4081104-4081291 (view UCSC Genome Browser custom track) |
Alignm length: | 188 |
Alignm identity: | 147 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-194 |
Cow position: | chr23:1248568-1248370 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 158 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-211 |
Cow position: | chr23:14790443-14790658 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 176 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-212 |
Cow position: | chr23:29442136-29441921 (view UCSC Genome Browser custom track) |
Alignm length: | 218 |
Alignm identity: | 179 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 148 |
Conread position: | 2-224 |
Cow position: | chr23:616306-616082 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 164 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 46, 0 |
Conread position: | 2-240 |
Cow position: | chr23:1048914-1048670 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 187 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 0 |
Conread position: | 2-240 |
Cow position: | chr23:1959089-1959330 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 196 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 104 |
Conread position: | 2-240 |
Cow position: | chr23:2024125-2023881 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 195 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:2409253-2409008 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 199 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:2720415-2720660 (view UCSC Genome Browser custom track) |
Alignm length: | 247 |
Alignm identity: | 197 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 106 |
Conread position: | 2-240 |
Cow position: | chr23:2760858-2761102 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 197 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 0 |
Conread position: | 2-240 |
Cow position: | chr23:3285718-3285962 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 195 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:3301815-3302058 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 191 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 197 |
Conread position: | 2-240 |
Cow position: | chr23:3417369-3417125 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 199 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:3709364-3709607 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 198 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 241 |
Conread position: | 2-240 |
Cow position: | chr23:4265656-4265413 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 197 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 192 |
Conread position: | 2-240 |
Cow position: | chr23:4532738-4532494 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:4891655-4891899 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 194 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 179 |
Conread position: | 2-240 |
Cow position: | chr23:5396621-5396377 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 198 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:5440877-5441121 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 197 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:10679874-10679630 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 196 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:10937343-10937099 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:11079343-11079587 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:11712708-11712464 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 198 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:11781743-11781988 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 195 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:15528546-15528790 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 194 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:17845957-17846201 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 190 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:20153262-20153018 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 197 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:20540780-20541024 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 198 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 0 |
Conread position: | 2-240 |
Cow position: | chr23:21008645-21008401 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 197 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:22169849-22170111 (view UCSC Genome Browser custom track) |
Alignm length: | 263 |
Alignm identity: | 198 |
Alignm E-value: | 3e-37 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:24119514-24119758 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 193 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:25351319-25351563 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 199 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:27402095-27402340 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 196 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:28084134-28083890 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 194 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:28221661-28221904 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 190 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:28987310-28987546 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 189 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 113 |
Conread position: | 2-240 |
Cow position: | chr23:29042742-29042986 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 193 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:31605387-31605631 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:31703854-31704098 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:37199555-37199310 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr23:41143400-41143644 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 201 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-328 |
Cow position: | chr23:14216264-14215912 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 130 |
Conread position: | 2-328 |
Cow position: | chr23:32008417-32008067 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 293 |
Conread position: | 2-365 |
Cow position: | chr23:609688-610058 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 264 |
Conread position: | 2-366 |
Cow position: | chr23:2722723-2723093 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 135 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-367 |
Cow position: | chr23:771532-771138 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 298 |
Conread position: | 2-386 |
Cow position: | chr23:11127973-11128393 (view UCSC Genome Browser custom track) |
Alignm length: | 421 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-386 |
Cow position: | chr23:14959989-14959582 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 187 |
Conread position: | 2-387 |
Cow position: | chr23:2180887-2180473 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 298 |
Conread position: | 2-388 |
Cow position: | chr23:1326354-1325940 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 295 |
Conread position: | 2-388 |
Cow position: | chr23:14840213-14839813 (view UCSC Genome Browser custom track) |
Alignm length: | 403 |
Alignm identity: | 270 |
Alignm E-value: | 5.00264e-43 |
Alignm gaps (pig, cow): | 47, 18 |
Conread position: | 2-388 |
Cow position: | chr23:14970992-14970579 (view UCSC Genome Browser custom track) |
Alignm length: | 418 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 246 |
Conread position: | 2-389 |
Cow position: | chr23:4516500-4516908 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 307 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 292 |
Conread position: | 2-390 |
Cow position: | chr23:4436592-4436993 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 174 |
Conread position: | 2-390 |
Cow position: | chr23:15215875-15215462 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 179 |
Conread position: | 2-390 |
Cow position: | chr23:16496311-16495901 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 290 |
Conread position: | 2-390 |
Cow position: | chr23:22144349-22143935 (view UCSC Genome Browser custom track) |
Alignm length: | 418 |
Alignm identity: | 307 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 185 |
Conread position: | 3-384 |
Cow position: | chr23:6222813-6223187 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 258 |
Alignm E-value: | 3.99931e-42 |
Alignm gaps (pig, cow): | 67, 215 |
Conread position: | 4-208 |
Cow position: | chr23:19492519-19492730 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 162 |
Alignm E-value: | 9e-39 |
Alignm gaps (pig, cow): | 39, 0 |
Conread position: | 4-240 |
Cow position: | chr23:30634633-30634391 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 193 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 0 |
Conread position: | 4-388 |
Cow position: | chr23:1338520-1338118 (view UCSC Genome Browser custom track) |
Alignm length: | 410 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 151 |
Conread position: | 8-388 |
Cow position: | chr23:20171232-20170830 (view UCSC Genome Browser custom track) |
Alignm length: | 410 |
Alignm identity: | 280 |
Alignm E-value: | 8e-37 |
Alignm gaps (pig, cow): | 39, 162 |
Conread position: | 23-383 |
Cow position: | chr23:38583904-38584284 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 262 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 47, 271 |
Conread position: | 23-388 |
Cow position: | chr23:16999427-16999815 (view UCSC Genome Browser custom track) |
Alignm length: | 393 |
Alignm identity: | 270 |
Alignm E-value: | 9e-38 |
Alignm gaps (pig, cow): | 26, 66 |
Conread position: | 59-390 |
Cow position: | chr23:19637860-19637520 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 241 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 11, 73 |
Conread position: | 69-366 |
Cow position: | chr23:954764-954448 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 170, 221 |
Conread position: | 71-383 |
Cow position: | chr23:21277600-21277265 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 247 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 86, 144 |
Conread position: | 112-388 |
Cow position: | chr23:29448173-29447875 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 223 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 73, 142 |
Conread position: | 158-367 |
Cow position: | chr23:27312966-27313198 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 170 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 49, 145 |
Conread position: | 172-377 |
Cow position: | chr23:671307-671534 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 169 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 43, 122 |
Conread position: | 236-387 |
Cow position: | chr23:8707611-8707763 (view UCSC Genome Browser custom track) |
Alignm length: | 155 |
Alignm identity: | 114 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 75, 37 |
Conread position: | 236-387 |
Cow position: | chr23:29446726-29446579 (view UCSC Genome Browser custom track) |
Alignm length: | 152 |
Alignm identity: | 114 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 37, 0 |
Conread position: | 244-386 |
Cow position: | chr23:36308439-36308579 (view UCSC Genome Browser custom track) |
Alignm length: | 146 |
Alignm identity: | 113 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 11, 31 |
Conread position: | 246-367 |
Cow position: | chr23:40773558-40773681 (view UCSC Genome Browser custom track) |
Alignm length: | 125 |
Alignm identity: | 97 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 65, 27 |
Conread position: | 250-388 |
Cow position: | chr23:1535357-1535498 (view UCSC Genome Browser custom track) |
Alignm length: | 143 |
Alignm identity: | 110 |
Alignm E-value: | 6e-24 |
Alignm gaps (pig, cow): | 56, 24 |
Show alignments to all cow chromosomes.