Cow genome map

Conread name: rpfco0110_d5.y1

Conread position: 1-240
Cow position: chr24:6021027-6020782 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 1-240
Cow position: chr24:36036775-36036530 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 1-240
Cow position: chr24:36779322-36779567 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 1-372
Cow position: chr24:36556527-36556135 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 106

Conread position: 2-154
Cow position: chr24:7457234-7457392 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 45, 0

Conread position: 2-154
Cow position: chr24:13320118-13319960 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 2-176
Cow position: chr24:38487458-38487638 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 141
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 45, 135

Conread position: 2-183
Cow position: chr24:7064618-7064805 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 152
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 45, 0

Conread position: 2-208
Cow position: chr24:6440805-6441017 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 169
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 45, 0

Conread position: 2-211
Cow position: chr24:12697964-12697749 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-228
Cow position: chr24:12578573-12578805 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-238
Cow position: chr24:22794611-22794853 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr24:3162522-3162766 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr24:6079478-6079721 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 2-240
Cow position: chr24:6524047-6524293 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 2-240
Cow position: chr24:6963902-6964146 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr24:7597507-7597263 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr24:9546224-9546468 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr24:11208555-11208311 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr24:12090031-12090276 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr24:12147538-12147291 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 188
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr24:12332660-12332411 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr24:12348342-12348097 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 193

Conread position: 2-240
Cow position: chr24:14194796-14194553 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 212

Conread position: 2-240
Cow position: chr24:14352404-14352648 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr24:16559227-16558983 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr24:17189222-17188978 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr24:18112509-18112751 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 116

Conread position: 2-240
Cow position: chr24:19688527-19688283 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr24:27724994-27724747 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr24:29084613-29084369 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr24:31067993-31067749 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr24:31842592-31842836 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr24:33936981-33937225 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 2-240
Cow position: chr24:35824149-35823909 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 2-240
Cow position: chr24:40551677-40551921 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr24:41005531-41005774 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 131

Conread position: 2-240
Cow position: chr24:41670867-41671110 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 188
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 45, 87

Conread position: 2-312
Cow position: chr24:12164919-12165241 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 107

Conread position: 2-366
Cow position: chr24:39680560-39680939 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 206

Conread position: 2-367
Cow position: chr24:207952-207550 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 231

Conread position: 2-367
Cow position: chr24:6412530-6412924 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 2-367
Cow position: chr24:17323749-17324140 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 175

Conread position: 2-367
Cow position: chr24:22974859-22975253 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 299

Conread position: 2-373
Cow position: chr24:6326319-6325921 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-375
Cow position: chr24:36028462-36028060 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 295

Conread position: 2-377
Cow position: chr24:3850647-3851050 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 298

Conread position: 2-377
Cow position: chr24:15296167-15296570 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 298

Conread position: 2-377
Cow position: chr24:17406178-17406538 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 246
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 46, 184

Conread position: 2-383
Cow position: chr24:14376594-14376179 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-384
Cow position: chr24:16646856-16646466 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 158

Conread position: 2-384
Cow position: chr24:18267439-18267025 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 400

Conread position: 2-385
Cow position: chr24:14147113-14146706 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 292

Conread position: 2-388
Cow position: chr24:27148162-27148571 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 2-388
Cow position: chr24:29181428-29181820 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 271
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 47, 105

Conread position: 2-388
Cow position: chr24:32608359-32608779 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 80

Conread position: 2-388
Cow position: chr24:36721497-36721912 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 297

Conread position: 2-388
Cow position: chr24:38813696-38814113 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 108

Conread position: 2-389
Cow position: chr24:6543629-6544044 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 299

Conread position: 2-390
Cow position: chr24:9549317-9549731 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 192

Conread position: 2-390
Cow position: chr24:20284155-20283744 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 293

Conread position: 2-390
Cow position: chr24:32361799-32361388 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 226

Conread position: 2-391
Cow position: chr24:5863300-5862886 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 128

Conread position: 3-240
Cow position: chr24:1841819-1841576 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 3-240
Cow position: chr24:39501537-39501297 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 187
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 44, 86

Conread position: 3-354
Cow position: chr24:32740855-32740491 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 276

Conread position: 3-387
Cow position: chr24:16056806-16056398 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 210

Conread position: 4-367
Cow position: chr24:20367421-20367812 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 152

Conread position: 4-388
Cow position: chr24:17365923-17365511 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 336

Conread position: 4-390
Cow position: chr24:25284832-25285228 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 272
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 43, 116

Conread position: 4-390
Cow position: chr24:31301759-31302151 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 321

Conread position: 5-367
Cow position: chr24:6068285-6067898 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 292

Conread position: 6-240
Cow position: chr24:25372159-25372399 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 6-377
Cow position: chr24:5928837-5929234 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 19

Conread position: 8-240
Cow position: chr24:17030937-17030698 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 163
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 8-378
Cow position: chr24:25439279-25439667 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 261
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 41, 206

Conread position: 18-382
Cow position: chr24:30893785-30893406 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 31

Conread position: 20-388
Cow position: chr24:32824024-32823654 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 256
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 13, 22

Conread position: 26-382
Cow position: chr24:14609765-14609414 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 244
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 23, 65

Conread position: 31-388
Cow position: chr24:34760614-34760977 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 60

Conread position: 59-378
Cow position: chr24:26274510-26274178 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 228
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 11, 46

Conread position: 69-367
Cow position: chr24:3793609-3793928 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 47

Conread position: 78-367
Cow position: chr24:5991049-5990741 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 212

Conread position: 87-367
Cow position: chr24:26412195-26412493 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 29

Conread position: 101-382
Cow position: chr24:17566009-17566306 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 53

Conread position: 103-367
Cow position: chr24:17161819-17161532 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 191

Conread position: 103-367
Cow position: chr24:30681963-30681687 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 180

Conread position: 132-391
Cow position: chr24:6271327-6271589 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 190
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 43, 134

Conread position: 143-367
Cow position: chr24:11104953-11104706 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 191
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 90, 151

Conread position: 236-385
Cow position: chr24:40519290-40519140 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 75, 37

Conread position: 244-372
Cow position: chr24:30870650-30870518 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 10, 31

Conread position: 244-388
Cow position: chr24:9071522-9071379 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 118
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 124, 29

Conread position: 246-367
Cow position: chr24:33640175-33640052 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 65, 27

Show alignments to all cow chromosomes.