Cow genome map

Conread name: rpfco0110_d5.y1

Conread position: 1-378
Cow position: chr25:24205359-24204975 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 31

Conread position: 2-168
Cow position: chr25:33990499-33990327 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 137
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 45, 0

Conread position: 2-186
Cow position: chr25:22150825-22151015 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 45, 177

Conread position: 2-195
Cow position: chr25:34368886-34369080 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 154
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 45, 155

Conread position: 2-195
Cow position: chr25:39387385-39387584 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 45, 0

Conread position: 2-224
Cow position: chr25:24228737-24228502 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 173
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 2-228
Cow position: chr25:22197637-22197405 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-231
Cow position: chr25:34257357-34257122 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-238
Cow position: chr25:29802996-29802754 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-239
Cow position: chr25:23326277-23326034 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr25:7223682-7223439 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 176

Conread position: 2-240
Cow position: chr25:8875790-8875546 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr25:13959820-13960060 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 120

Conread position: 2-240
Cow position: chr25:17657375-17657613 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 154

Conread position: 2-240
Cow position: chr25:18489813-18490059 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr25:18886719-18886488 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 59

Conread position: 2-240
Cow position: chr25:21949550-21949791 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 110

Conread position: 2-240
Cow position: chr25:24007657-24007901 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr25:25509622-25509866 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr25:26281774-26282018 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr25:26706133-26705889 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr25:29526112-29525874 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 198

Conread position: 2-240
Cow position: chr25:34503473-34503229 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr25:34509430-34509186 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr25:35571569-35571812 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 192

Conread position: 2-241
Cow position: chr25:28862620-28862867 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 2-367
Cow position: chr25:17586270-17585879 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 89

Conread position: 2-367
Cow position: chr25:18190621-18190233 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 23

Conread position: 2-367
Cow position: chr25:19337572-19337182 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 126

Conread position: 2-367
Cow position: chr25:26781333-26780943 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 303

Conread position: 2-367
Cow position: chr25:27019488-27019095 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 24

Conread position: 2-367
Cow position: chr25:35553433-35553810 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 57

Conread position: 2-373
Cow position: chr25:35568135-35567738 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 180

Conread position: 2-376
Cow position: chr25:26354035-26353633 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 298

Conread position: 2-377
Cow position: chr25:34673823-34673434 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 284

Conread position: 2-377
Cow position: chr25:41120758-41121156 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 303

Conread position: 2-384
Cow position: chr25:450037-449634 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 80

Conread position: 2-385
Cow position: chr25:26913986-26914390 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 110

Conread position: 2-387
Cow position: chr25:17561797-17562204 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 28

Conread position: 2-388
Cow position: chr25:393023-393431 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 32

Conread position: 2-388
Cow position: chr25:10136573-10136978 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 31

Conread position: 2-388
Cow position: chr25:18071986-18072390 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 6

Conread position: 2-388
Cow position: chr25:20495320-20495709 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 106

Conread position: 2-388
Cow position: chr25:26930844-26931261 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-388
Cow position: chr25:28420950-28420538 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 290

Conread position: 2-389
Cow position: chr25:33838129-33838550 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 285
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 46, 12

Conread position: 2-390
Cow position: chr25:11043372-11043784 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 6

Conread position: 2-390
Cow position: chr25:18473958-18474363 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 384

Conread position: 2-390
Cow position: chr25:24655420-24655009 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 390

Conread position: 2-390
Cow position: chr25:25480859-25480441 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 293
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 45, 189

Conread position: 3-238
Cow position: chr25:12939457-12939216 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 3-240
Cow position: chr25:41098446-41098198 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 3-367
Cow position: chr25:36350490-36350881 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 295

Conread position: 5-383
Cow position: chr25:20772574-20772174 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 296

Conread position: 6-390
Cow position: chr25:32577908-32577497 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 12

Conread position: 8-239
Cow position: chr25:33688459-33688226 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 137

Conread position: 8-382
Cow position: chr25:29313560-29313162 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 172

Conread position: 18-388
Cow position: chr25:37648202-37648583 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 87

Conread position: 20-388
Cow position: chr25:11955598-11955996 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 280

Conread position: 62-388
Cow position: chr25:35040069-35039720 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 237
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 8, 0

Conread position: 106-367
Cow position: chr25:32610551-32610277 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 211
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 127, 64

Conread position: 147-383
Cow position: chr25:19923427-19923681 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 190
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 70, 147

Conread position: 167-388
Cow position: chr25:18486386-18486624 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 177
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 62, 123

Conread position: 191-390
Cow position: chr25:16801397-16801605 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 51, 7

Conread position: 236-367
Cow position: chr25:29358002-29357869 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 75, 37

Conread position: 236-388
Cow position: chr25:17993131-17992982 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 133, 37

Conread position: 236-388
Cow position: chr25:40322280-40322125 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 75, 37

Conread position: 244-385
Cow position: chr25:24228319-24228178 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 32

Conread position: 244-387
Cow position: chr25:37593421-37593567 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 11, 30

Conread position: 244-388
Cow position: chr25:4372674-4372529 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 11, 30

Conread position: 244-388
Cow position: chr25:18180380-18180527 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 22

Conread position: 244-391
Cow position: chr25:23366678-23366832 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 11, 31

Conread position: 247-372
Cow position: chr25:17554238-17554111 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 64, 38

Show alignments to all cow chromosomes.