Cow genome map
Conread name: | rpfco0110_d5.y1 |
Conread position: | 1-378 |
Cow position: | chr25:24205359-24204975 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 31 |
Conread position: | 2-168 |
Cow position: | chr25:33990499-33990327 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 137 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-186 |
Cow position: | chr25:22150825-22151015 (view UCSC Genome Browser custom track) |
Alignm length: | 192 |
Alignm identity: | 148 |
Alignm E-value: | 6e-34 |
Alignm gaps (pig, cow): | 45, 177 |
Conread position: | 2-195 |
Cow position: | chr25:34368886-34369080 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 154 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 45, 155 |
Conread position: | 2-195 |
Cow position: | chr25:39387385-39387584 (view UCSC Genome Browser custom track) |
Alignm length: | 200 |
Alignm identity: | 145 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-224 |
Cow position: | chr25:24228737-24228502 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 173 |
Alignm E-value: | 6e-35 |
Alignm gaps (pig, cow): | 53, 0 |
Conread position: | 2-228 |
Cow position: | chr25:22197637-22197405 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 188 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-231 |
Cow position: | chr25:34257357-34257122 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 189 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-238 |
Cow position: | chr25:29802996-29802754 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 191 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-239 |
Cow position: | chr25:23326277-23326034 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 196 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr25:7223682-7223439 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 176 |
Conread position: | 2-240 |
Cow position: | chr25:8875790-8875546 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr25:13959820-13960060 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 196 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 120 |
Conread position: | 2-240 |
Cow position: | chr25:17657375-17657613 (view UCSC Genome Browser custom track) |
Alignm length: | 241 |
Alignm identity: | 188 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 154 |
Conread position: | 2-240 |
Cow position: | chr25:18489813-18490059 (view UCSC Genome Browser custom track) |
Alignm length: | 247 |
Alignm identity: | 192 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr25:18886719-18886488 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 193 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 59 |
Conread position: | 2-240 |
Cow position: | chr25:21949550-21949791 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 194 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 110 |
Conread position: | 2-240 |
Cow position: | chr25:24007657-24007901 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 198 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr25:25509622-25509866 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 194 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr25:26281774-26282018 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 202 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr25:26706133-26705889 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 201 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr25:29526112-29525874 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 193 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 198 |
Conread position: | 2-240 |
Cow position: | chr25:34503473-34503229 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 195 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr25:34509430-34509186 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 193 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-240 |
Cow position: | chr25:35571569-35571812 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 197 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 192 |
Conread position: | 2-241 |
Cow position: | chr25:28862620-28862867 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 0 |
Conread position: | 2-367 |
Cow position: | chr25:17586270-17585879 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 298 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 89 |
Conread position: | 2-367 |
Cow position: | chr25:18190621-18190233 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 23 |
Conread position: | 2-367 |
Cow position: | chr25:19337572-19337182 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 126 |
Conread position: | 2-367 |
Cow position: | chr25:26781333-26780943 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 303 |
Conread position: | 2-367 |
Cow position: | chr25:27019488-27019095 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 24 |
Conread position: | 2-367 |
Cow position: | chr25:35553433-35553810 (view UCSC Genome Browser custom track) |
Alignm length: | 388 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 57 |
Conread position: | 2-373 |
Cow position: | chr25:35568135-35567738 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 180 |
Conread position: | 2-376 |
Cow position: | chr25:26354035-26353633 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 298 |
Conread position: | 2-377 |
Cow position: | chr25:34673823-34673434 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 284 |
Conread position: | 2-377 |
Cow position: | chr25:41120758-41121156 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 303 |
Conread position: | 2-384 |
Cow position: | chr25:450037-449634 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 80 |
Conread position: | 2-385 |
Cow position: | chr25:26913986-26914390 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 110 |
Conread position: | 2-387 |
Cow position: | chr25:17561797-17562204 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 28 |
Conread position: | 2-388 |
Cow position: | chr25:393023-393431 (view UCSC Genome Browser custom track) |
Alignm length: | 414 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 32 |
Conread position: | 2-388 |
Cow position: | chr25:10136573-10136978 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 31 |
Conread position: | 2-388 |
Cow position: | chr25:18071986-18072390 (view UCSC Genome Browser custom track) |
Alignm length: | 412 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 6 |
Conread position: | 2-388 |
Cow position: | chr25:20495320-20495709 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 106 |
Conread position: | 2-388 |
Cow position: | chr25:26930844-26931261 (view UCSC Genome Browser custom track) |
Alignm length: | 418 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 2-388 |
Cow position: | chr25:28420950-28420538 (view UCSC Genome Browser custom track) |
Alignm length: | 414 |
Alignm identity: | 313 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 290 |
Conread position: | 2-389 |
Cow position: | chr25:33838129-33838550 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 285 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 46, 12 |
Conread position: | 2-390 |
Cow position: | chr25:11043372-11043784 (view UCSC Genome Browser custom track) |
Alignm length: | 417 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 6 |
Conread position: | 2-390 |
Cow position: | chr25:18473958-18474363 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 307 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 384 |
Conread position: | 2-390 |
Cow position: | chr25:24655420-24655009 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 307 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 390 |
Conread position: | 2-390 |
Cow position: | chr25:25480859-25480441 (view UCSC Genome Browser custom track) |
Alignm length: | 422 |
Alignm identity: | 293 |
Alignm E-value: | 5.00264e-43 |
Alignm gaps (pig, cow): | 45, 189 |
Conread position: | 3-238 |
Cow position: | chr25:12939457-12939216 (view UCSC Genome Browser custom track) |
Alignm length: | 242 |
Alignm identity: | 192 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 0 |
Conread position: | 3-240 |
Cow position: | chr25:41098446-41098198 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 193 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 0 |
Conread position: | 3-367 |
Cow position: | chr25:36350490-36350881 (view UCSC Genome Browser custom track) |
Alignm length: | 393 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 295 |
Conread position: | 5-383 |
Cow position: | chr25:20772574-20772174 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 308 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 296 |
Conread position: | 6-390 |
Cow position: | chr25:32577908-32577497 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 12 |
Conread position: | 8-239 |
Cow position: | chr25:33688459-33688226 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 185 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 137 |
Conread position: | 8-382 |
Cow position: | chr25:29313560-29313162 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 172 |
Conread position: | 18-388 |
Cow position: | chr25:37648202-37648583 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 87 |
Conread position: | 20-388 |
Cow position: | chr25:11955598-11955996 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 280 |
Conread position: | 62-388 |
Cow position: | chr25:35040069-35039720 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 237 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 8, 0 |
Conread position: | 106-367 |
Cow position: | chr25:32610551-32610277 (view UCSC Genome Browser custom track) |
Alignm length: | 286 |
Alignm identity: | 211 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 127, 64 |
Conread position: | 147-383 |
Cow position: | chr25:19923427-19923681 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 190 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 70, 147 |
Conread position: | 167-388 |
Cow position: | chr25:18486386-18486624 (view UCSC Genome Browser custom track) |
Alignm length: | 242 |
Alignm identity: | 177 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 62, 123 |
Conread position: | 191-390 |
Cow position: | chr25:16801397-16801605 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 158 |
Alignm E-value: | 4e-30 |
Alignm gaps (pig, cow): | 51, 7 |
Conread position: | 236-367 |
Cow position: | chr25:29358002-29357869 (view UCSC Genome Browser custom track) |
Alignm length: | 135 |
Alignm identity: | 102 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 75, 37 |
Conread position: | 236-388 |
Cow position: | chr25:17993131-17992982 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 117 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 133, 37 |
Conread position: | 236-388 |
Cow position: | chr25:40322280-40322125 (view UCSC Genome Browser custom track) |
Alignm length: | 157 |
Alignm identity: | 116 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 75, 37 |
Conread position: | 244-385 |
Cow position: | chr25:24228319-24228178 (view UCSC Genome Browser custom track) |
Alignm length: | 144 |
Alignm identity: | 109 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 60, 32 |
Conread position: | 244-387 |
Cow position: | chr25:37593421-37593567 (view UCSC Genome Browser custom track) |
Alignm length: | 148 |
Alignm identity: | 116 |
Alignm E-value: | 8e-27 |
Alignm gaps (pig, cow): | 11, 30 |
Conread position: | 244-388 |
Cow position: | chr25:4372674-4372529 (view UCSC Genome Browser custom track) |
Alignm length: | 148 |
Alignm identity: | 113 |
Alignm E-value: | 6e-24 |
Alignm gaps (pig, cow): | 11, 30 |
Conread position: | 244-388 |
Cow position: | chr25:18180380-18180527 (view UCSC Genome Browser custom track) |
Alignm length: | 150 |
Alignm identity: | 113 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 11, 22 |
Conread position: | 244-391 |
Cow position: | chr25:23366678-23366832 (view UCSC Genome Browser custom track) |
Alignm length: | 156 |
Alignm identity: | 119 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 11, 31 |
Conread position: | 247-372 |
Cow position: | chr25:17554238-17554111 (view UCSC Genome Browser custom track) |
Alignm length: | 129 |
Alignm identity: | 101 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 64, 38 |
Show alignments to all cow chromosomes.