Cow genome map
| Conread name: | rpfco0110_d5.y1 |
| Conread position: | 1-240 |
| Cow position: | chr27:15543974-15544219 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 2-152 |
| Cow position: | chr27:29447116-29446960 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-180 |
| Cow position: | chr27:7911943-7912124 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 45, 110 |
| Conread position: | 2-182 |
| Cow position: | chr27:22647946-22647760 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-188 |
| Cow position: | chr27:15925959-15925767 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 158 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 2-210 |
| Cow position: | chr27:219841-219637 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 45, 79 |
| Conread position: | 2-228 |
| Cow position: | chr27:8960069-8959837 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-238 |
| Cow position: | chr27:1082202-1081960 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-240 |
| Cow position: | chr27:526138-525895 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 117 |
| Conread position: | 2-240 |
| Cow position: | chr27:1520640-1520884 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 2-240 |
| Cow position: | chr27:2000805-2001049 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 215 |
| Conread position: | 2-240 |
| Cow position: | chr27:2558031-2557787 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 2-240 |
| Cow position: | chr27:3232574-3232330 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-240 |
| Cow position: | chr27:3759831-3760072 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 145 |
| Conread position: | 2-240 |
| Cow position: | chr27:4331780-4331536 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 2-240 |
| Cow position: | chr27:4982332-4982576 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-240 |
| Cow position: | chr27:5913898-5914137 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 114 |
| Conread position: | 2-240 |
| Cow position: | chr27:8972404-8972648 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-240 |
| Cow position: | chr27:10578906-10579151 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-240 |
| Cow position: | chr27:11434136-11434379 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 129 |
| Conread position: | 2-240 |
| Cow position: | chr27:13308604-13308848 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-240 |
| Cow position: | chr27:15634374-15634138 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 2-240 |
| Cow position: | chr27:17422550-17422788 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 45, 171 |
| Conread position: | 2-240 |
| Cow position: | chr27:24296306-24296065 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-240 |
| Cow position: | chr27:26329893-26330136 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 152 |
| Conread position: | 2-240 |
| Cow position: | chr27:27849230-27849474 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-240 |
| Cow position: | chr27:29036409-29036176 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 140 |
| Conread position: | 2-255 |
| Cow position: | chr27:12146683-12146424 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-367 |
| Cow position: | chr27:5984070-5983676 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 258 |
| Conread position: | 2-367 |
| Cow position: | chr27:8200898-8201289 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 106 |
| Conread position: | 2-367 |
| Cow position: | chr27:16031437-16031043 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 258 |
| Conread position: | 2-367 |
| Cow position: | chr27:20810381-20810770 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-367 |
| Cow position: | chr27:22797697-22797305 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 295 |
| Conread position: | 2-376 |
| Cow position: | chr27:21451405-21451807 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 178 |
| Conread position: | 2-378 |
| Cow position: | chr27:13353266-13353670 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 298 |
| Conread position: | 2-383 |
| Cow position: | chr27:25799219-25799629 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 91 |
| Conread position: | 2-383 |
| Cow position: | chr27:26784782-26785188 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 294 |
| Conread position: | 2-383 |
| Cow position: | chr27:27556768-27557172 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 47 |
| Conread position: | 2-385 |
| Cow position: | chr27:165960-165548 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 259 |
| Conread position: | 2-388 |
| Cow position: | chr27:1536141-1536545 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 288 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 45, 106 |
| Conread position: | 2-388 |
| Cow position: | chr27:25801245-25800835 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 294 |
| Conread position: | 2-390 |
| Cow position: | chr27:344963-344554 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 291 |
| Conread position: | 2-390 |
| Cow position: | chr27:8426818-8427234 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 2-391 |
| Cow position: | chr27:29811291-29811680 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 115 |
| Conread position: | 3-184 |
| Cow position: | chr27:16788469-16788284 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 46, 78 |
| Conread position: | 10-388 |
| Cow position: | chr27:27278694-27279090 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 27, 166 |
| Conread position: | 17-367 |
| Cow position: | chr27:30307293-30306915 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 146 |
| Conread position: | 19-388 |
| Cow position: | chr27:15405621-15405997 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 30, 88 |
| Conread position: | 21-387 |
| Cow position: | chr27:14380300-14380679 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 268 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 28, 104 |
| Conread position: | 28-385 |
| Cow position: | chr27:12281684-12282061 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 82 |
| Conread position: | 28-389 |
| Cow position: | chr27:8290832-8291217 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 272 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 19, 98 |
| Conread position: | 29-368 |
| Cow position: | chr27:14297194-14297562 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 271 |
| Conread position: | 53-366 |
| Cow position: | chr27:1501553-1501867 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 15, 31 |
| Conread position: | 59-388 |
| Cow position: | chr27:8592421-8592756 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 12, 125 |
| Conread position: | 80-388 |
| Cow position: | chr27:13183219-13182909 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 165 |
| Conread position: | 87-367 |
| Cow position: | chr27:20001467-20001759 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 196 |
| Conread position: | 95-390 |
| Cow position: | chr27:15872260-15871951 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 96, 197 |
| Conread position: | 138-388 |
| Cow position: | chr27:11256563-11256310 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 107, 139 |
| Conread position: | 151-388 |
| Cow position: | chr27:13316678-13316935 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 88, 139 |
| Conread position: | 173-366 |
| Cow position: | chr27:10383585-10383791 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 69, 39 |
| Conread position: | 229-388 |
| Cow position: | chr27:16788084-16787922 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 82, 44 |
| Conread position: | 236-383 |
| Cow position: | chr27:10306339-10306489 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 75, 37 |
| Conread position: | 236-383 |
| Cow position: | chr27:21350069-21350218 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 75, 37 |
| Conread position: | 236-388 |
| Cow position: | chr27:15867074-15866927 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 236-390 |
| Cow position: | chr27:12239289-12239444 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 75, 34 |
| Conread position: | 236-390 |
| Cow position: | chr27:30036090-30036247 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 75, 37 |
| Conread position: | 238-390 |
| Cow position: | chr27:2681741-2681896 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 246-367 |
| Cow position: | chr27:17476976-17476853 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 67, 27 |
| Conread position: | 246-383 |
| Cow position: | chr27:16332247-16332108 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 66, 27 |
Show alignments to all cow chromosomes.