Cow genome map

Conread name: rpfco0110_d5.y1

Conread position: 1-240
Cow position: chr29:4083530-4083284 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 171
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 173, 148

Conread position: 1-240
Cow position: chr29:10845932-10846177 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 1-240
Cow position: chr29:15117850-15117605 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 2-139
Cow position: chr29:31123388-31123245 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 2-166
Cow position: chr29:15995405-15995235 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 45, 0

Conread position: 2-168
Cow position: chr29:40471642-40471814 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 136
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 45, 0

Conread position: 2-191
Cow position: chr29:35299896-35300091 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 155
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 45, 0

Conread position: 2-224
Cow position: chr29:11159547-11159318 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-238
Cow position: chr29:726706-726948 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-239
Cow position: chr29:15943330-15943572 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 180
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 44, 192

Conread position: 2-240
Cow position: chr29:1478429-1478672 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 211

Conread position: 2-240
Cow position: chr29:2102824-2103068 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 179

Conread position: 2-240
Cow position: chr29:2483885-2484129 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:2745520-2745281 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 181
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 45, 155

Conread position: 2-240
Cow position: chr29:3329569-3329813 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:4163665-4163909 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:5240371-5240615 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 179

Conread position: 2-240
Cow position: chr29:6263031-6262788 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 105

Conread position: 2-240
Cow position: chr29:7847366-7847613 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:10452838-10452595 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 2-240
Cow position: chr29:13585193-13585436 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 204

Conread position: 2-240
Cow position: chr29:15699289-15699533 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:15966577-15966333 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:16036440-16036196 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:16064688-16064931 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 192

Conread position: 2-240
Cow position: chr29:16102140-16101897 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 204

Conread position: 2-240
Cow position: chr29:19515367-19515125 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 211

Conread position: 2-240
Cow position: chr29:19525312-19525069 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 192

Conread position: 2-240
Cow position: chr29:19620291-19620048 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 163

Conread position: 2-240
Cow position: chr29:21429883-21429639 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:22745877-22746121 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:24806432-24806676 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 215

Conread position: 2-240
Cow position: chr29:26161860-26161612 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:28657391-28657147 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:30433215-30432971 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 2-240
Cow position: chr29:31094609-31094365 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:31184353-31184597 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:32291570-32291815 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 111

Conread position: 2-240
Cow position: chr29:32515305-32515549 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:32543114-32543359 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:32556767-32556523 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:34524345-34524101 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:35264894-35265138 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:39076741-39076498 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 184

Conread position: 2-240
Cow position: chr29:40156721-40156965 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:42256001-42255757 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:45462210-45462454 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr29:45626322-45626561 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 86

Conread position: 2-241
Cow position: chr29:2838359-2838114 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-241
Cow position: chr29:23979688-23979933 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-293
Cow position: chr29:27813668-27813953 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 142

Conread position: 2-328
Cow position: chr29:9330894-9331229 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 253
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 46, 110

Conread position: 2-366
Cow position: chr29:10644434-10644045 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 186

Conread position: 2-367
Cow position: chr29:21474126-21474520 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 298

Conread position: 2-367
Cow position: chr29:31765017-31765411 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 307

Conread position: 2-367
Cow position: chr29:32352595-32352966 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 276
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 45, 140

Conread position: 2-367
Cow position: chr29:35956325-35955935 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-367
Cow position: chr29:40618861-40618484 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 45

Conread position: 2-371
Cow position: chr29:607660-607272 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 249

Conread position: 2-371
Cow position: chr29:21226954-21227351 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 83

Conread position: 2-381
Cow position: chr29:16347183-16347582 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 160

Conread position: 2-388
Cow position: chr29:14208579-14208175 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 181

Conread position: 2-388
Cow position: chr29:42806968-42807377 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 289

Conread position: 2-389
Cow position: chr29:32289368-32289777 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 292

Conread position: 2-390
Cow position: chr29:1576997-1576600 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 268
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 57, 30

Conread position: 2-390
Cow position: chr29:6934468-6934876 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 137

Conread position: 2-390
Cow position: chr29:8624219-8623815 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 286

Conread position: 2-390
Cow position: chr29:20254144-20254557 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 144

Conread position: 2-390
Cow position: chr29:22279351-22279765 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 287

Conread position: 2-390
Cow position: chr29:25929532-25929115 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 396

Conread position: 2-390
Cow position: chr29:32807358-32807754 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 282
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 45, 152

Conread position: 3-240
Cow position: chr29:3585231-3584991 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 86

Conread position: 3-240
Cow position: chr29:43326492-43326735 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 3-385
Cow position: chr29:17408106-17408514 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 333

Conread position: 3-388
Cow position: chr29:45651573-45651150 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 302
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 8, 304

Conread position: 4-240
Cow position: chr29:17138081-17138329 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 4-367
Cow position: chr29:27702056-27702448 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 296

Conread position: 4-391
Cow position: chr29:4200369-4200773 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 31

Conread position: 6-181
Cow position: chr29:27260131-27259950 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 141
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 37, 0

Conread position: 8-185
Cow position: chr29:2184089-2184270 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 150
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 39, 168

Conread position: 14-388
Cow position: chr29:11785993-11786395 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 285

Conread position: 26-389
Cow position: chr29:21254959-21255345 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 138

Conread position: 59-383
Cow position: chr29:36634311-36633967 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 100

Conread position: 71-383
Cow position: chr29:35739641-35739313 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 227
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 29, 215

Conread position: 87-367
Cow position: chr29:38409261-38409568 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 224
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 10, 211

Conread position: 87-388
Cow position: chr29:6872206-6871891 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 90

Conread position: 103-385
Cow position: chr29:2299218-2298931 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 196
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 103, 84

Conread position: 106-367
Cow position: chr29:21326054-21325789 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 69

Conread position: 113-388
Cow position: chr29:9639436-9639136 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 217
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 55, 147

Conread position: 116-384
Cow position: chr29:20999334-20999604 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 193
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 91, 34

Conread position: 129-388
Cow position: chr29:37451208-37451469 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 180
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 110, 38

Conread position: 236-390
Cow position: chr29:27259647-27259490 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 73, 0

Conread position: 244-390
Cow position: chr29:35076368-35076517 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 10, 31

Conread position: 246-367
Cow position: chr29:32316317-32316440 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 65, 27

Show alignments to all cow chromosomes.