Cow genome map

Conread name: rpfco0110_d5.y1

Conread position: 1-128
Cow position:
Alignm length: 134
Alignm identity: 110
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 43, 0

Conread position: 2-130
Cow position:
Alignm length: 135
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 2-150
Cow position:
Alignm length: 155
Alignm identity: 120
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 45, 120

Conread position: 2-151
Cow position:
Alignm length: 156
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 2-168
Cow position:
Alignm length: 174
Alignm identity: 135
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 45, 0

Conread position: 2-176
Cow position:
Alignm length: 181
Alignm identity: 142
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 45, 0

Conread position: 2-182
Cow position:
Alignm length: 187
Alignm identity: 149
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 45, 0

Conread position: 2-184
Cow position:
Alignm length: 187
Alignm identity: 143
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 45, 62

Conread position: 2-195
Cow position:
Alignm length: 194
Alignm identity: 144
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 45, 0

Conread position: 2-201
Cow position:
Alignm length: 206
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-218
Cow position:
Alignm length: 223
Alignm identity: 168
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 45, 191

Conread position: 2-227
Cow position:
Alignm length: 227
Alignm identity: 176
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 44, 65

Conread position: 2-240
Cow position:
Alignm length: 240
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 59

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 247
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 246
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 246
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 246
Alignm identity: 187
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 45, 111

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 131

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 252
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 247
Alignm identity: 186
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 45, 124

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 243
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 125

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 246
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 85

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 247
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 2-240
Cow position:
Alignm length: 246
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 246
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position:
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-241
Cow position:
Alignm length: 246
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-241
Cow position:
Alignm length: 246
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-247
Cow position:
Alignm length: 257
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 2-250
Cow position:
Alignm length: 255
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 198

Conread position: 2-338
Cow position:
Alignm length: 361
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 113

Conread position: 2-365
Cow position:
Alignm length: 386
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 131

Conread position: 2-365
Cow position:
Alignm length: 386
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 107

Conread position: 2-367
Cow position:
Alignm length: 389
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 122

Conread position: 2-367
Cow position:
Alignm length: 396
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 298

Conread position: 2-367
Cow position:
Alignm length: 395
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 159

Conread position: 2-367
Cow position:
Alignm length: 397
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 298

Conread position: 2-367
Cow position:
Alignm length: 396
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 298

Conread position: 2-367
Cow position:
Alignm length: 396
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 298

Conread position: 2-367
Cow position:
Alignm length: 395
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-367
Cow position:
Alignm length: 394
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-367
Cow position:
Alignm length: 391
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-367
Cow position:
Alignm length: 388
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 252

Conread position: 2-371
Cow position:
Alignm length: 400
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 176

Conread position: 2-377
Cow position:
Alignm length: 400
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 293

Conread position: 2-377
Cow position:
Alignm length: 418
Alignm identity: 291
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 47, 309

Conread position: 2-377
Cow position:
Alignm length: 402
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 203

Conread position: 2-378
Cow position:
Alignm length: 383
Alignm identity: 258
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 68, 47

Conread position: 2-378
Cow position:
Alignm length: 405
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 26

Conread position: 2-379
Cow position:
Alignm length: 406
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 293

Conread position: 2-381
Cow position:
Alignm length: 393
Alignm identity: 260
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 47, 10

Conread position: 2-383
Cow position:
Alignm length: 413
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 296

Conread position: 2-383
Cow position:
Alignm length: 408
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 92

Conread position: 2-385
Cow position:
Alignm length: 408
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 292

Conread position: 2-385
Cow position:
Alignm length: 412
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 116

Conread position: 2-385
Cow position:
Alignm length: 414
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 298

Conread position: 2-385
Cow position:
Alignm length: 414
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 396

Conread position: 2-387
Cow position:
Alignm length: 409
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 45

Conread position: 2-388
Cow position:
Alignm length: 402
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 172

Conread position: 2-388
Cow position:
Alignm length: 415
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 95

Conread position: 2-388
Cow position:
Alignm length: 416
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 162

Conread position: 2-388
Cow position:
Alignm length: 397
Alignm identity: 263
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 47, 172

Conread position: 2-388
Cow position:
Alignm length: 412
Alignm identity: 268
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 47, 150

Conread position: 2-388
Cow position:
Alignm length: 401
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 40

Conread position: 2-388
Cow position:
Alignm length: 415
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 282

Conread position: 2-388
Cow position:
Alignm length: 416
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 324

Conread position: 2-389
Cow position:
Alignm length: 415
Alignm identity: 284
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 47, 106

Conread position: 2-390
Cow position:
Alignm length: 408
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 127

Conread position: 2-390
Cow position:
Alignm length: 405
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 114

Conread position: 3-183
Cow position:
Alignm length: 187
Alignm identity: 143
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 44, 31

Conread position: 3-238
Cow position:
Alignm length: 242
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 3-380
Cow position:
Alignm length: 392
Alignm identity: 250
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 46, 168

Conread position: 3-384
Cow position:
Alignm length: 410
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 3-390
Cow position:
Alignm length: 414
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 290

Conread position: 4-202
Cow position:
Alignm length: 205
Alignm identity: 158
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 43, 127

Conread position: 4-240
Cow position:
Alignm length: 243
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 4-385
Cow position:
Alignm length: 412
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 296

Conread position: 4-391
Cow position:
Alignm length: 420
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 292

Conread position: 6-388
Cow position:
Alignm length: 395
Alignm identity: 272
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 43, 26

Conread position: 6-388
Cow position:
Alignm length: 408
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 329

Conread position: 13-240
Cow position:
Alignm length: 234
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 14-383
Cow position:
Alignm length: 380
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 231

Conread position: 21-383
Cow position:
Alignm length: 390
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 14

Conread position: 30-368
Cow position:
Alignm length: 371
Alignm identity: 264
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 18, 108

Conread position: 59-384
Cow position:
Alignm length: 352
Alignm identity: 244
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 12, 47

Conread position: 59-389
Cow position:
Alignm length: 357
Alignm identity: 250
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 11, 48

Conread position: 69-366
Cow position:
Alignm length: 323
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 236

Conread position: 71-376
Cow position:
Alignm length: 312
Alignm identity: 215
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 45, 72

Conread position: 87-388
Cow position:
Alignm length: 325
Alignm identity: 233
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 87, 207

Conread position: 88-384
Cow position:
Alignm length: 315
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 66

Conread position: 89-367
Cow position:
Alignm length: 297
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 199

Conread position: 113-367
Cow position:
Alignm length: 279
Alignm identity: 211
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 104, 181

Conread position: 117-388
Cow position:
Alignm length: 276
Alignm identity: 186
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 196, 101

Conread position: 131-377
Cow position:
Alignm length: 265
Alignm identity: 197
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 36, 255

Conread position: 160-377
Cow position:
Alignm length: 240
Alignm identity: 171
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 57, 134

Conread position: 165-387
Cow position:
Alignm length: 246
Alignm identity: 179
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 14, 58

Conread position: 230-388
Cow position:
Alignm length: 163
Alignm identity: 124
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 79, 52

Conread position: 230-390
Cow position:
Alignm length: 165
Alignm identity: 120
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 90, 43

Conread position: 235-365
Cow position:
Alignm length: 134
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 76, 38

Conread position: 236-367
Cow position:
Alignm length: 135
Alignm identity: 103
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 75, 37

Conread position: 236-381
Cow position:
Alignm length: 151
Alignm identity: 117
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 73, 36

Conread position: 236-385
Cow position:
Alignm length: 153
Alignm identity: 112
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 75, 37

Conread position: 238-367
Cow position:
Alignm length: 132
Alignm identity: 102
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 73, 35

Conread position: 244-365
Cow position:
Alignm length: 127
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 7, 31

Conread position: 244-388
Cow position:
Alignm length: 149
Alignm identity: 112
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 244-390
Cow position:
Alignm length: 152
Alignm identity: 113
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 11, 31

Conread position: 244-391
Cow position:
Alignm length: 149
Alignm identity: 113
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 126, 29

Conread position: 247-383
Cow position:
Alignm length: 141
Alignm identity: 106
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 64, 24

Conread position: 247-383
Cow position:
Alignm length: 140
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 26

Conread position: 253-388
Cow position:
Alignm length: 140
Alignm identity: 106
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 61, 20

Show alignments to all cow chromosomes.