Cow genome map
| Conread name: | rpfco0113_l5.y1 |
| Conread position: | 54-302 |
| Cow position: | chrX:17042557-17042831 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 27, 153 |
| Conread position: | 56-262 |
| Cow position: | chrX:3161147-3160925 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 25, 184 |
| Conread position: | 56-273 |
| Cow position: | chrX:9161452-9161695 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 44 |
| Conread position: | 81-298 |
| Cow position: | chrX:6479891-6480122 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 115 |
| Conread position: | 81-301 |
| Cow position: | chrX:582949-583183 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 52, 153 |
| Conread position: | 92-300 |
| Cow position: | chrX:43980673-43980882 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 90, 48 |
| Conread position: | 99-273 |
| Cow position: | chrX:39097449-39097629 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 99-302 |
| Cow position: | chrX:18216215-18216417 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 84, 13 |
| Conread position: | 107-263 |
| Cow position: | chrX:6367842-6367674 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 107-300 |
| Cow position: | chrX:4446657-4446852 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 137-302 |
| Cow position: | chrX:34470699-34470861 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 154-302 |
| Cow position: | chrX:21640425-21640573 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 155-302 |
| Cow position: | chrX:6563519-6563668 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 155-302 |
| Cow position: | chrX:27287737-27287588 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 155-302 |
| Cow position: | chrX:32743533-32743681 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 140 |
| Conread position: | 155-302 |
| Cow position: | chrX:36840868-36841011 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 84, 24 |
| Conread position: | 158-275 |
| Cow position: | chrX:7345086-7345205 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 158-284 |
| Cow position: | chrX:16514264-16514136 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 11, 44 |
| Conread position: | 158-300 |
| Cow position: | chrX:18456403-18456547 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 10, 107 |
| Conread position: | 158-302 |
| Cow position: | chrX:7425468-7425614 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 159-302 |
| Cow position: | chrX:9539326-9539470 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 24, 136 |
| Conread position: | 159-302 |
| Cow position: | chrX:9839228-9839372 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 28, 136 |
| Conread position: | 159-302 |
| Cow position: | chrX:21664720-21664572 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 160-282 |
| Cow position: | chrX:20011412-20011535 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 22, 115 |
| Conread position: | 161-302 |
| Cow position: | chrX:1978515-1978656 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 39 |
| Conread position: | 162-301 |
| Cow position: | chrX:33803001-33802860 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 162-302 |
| Cow position: | chrX:16419153-16419295 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 162-302 |
| Cow position: | chrX:38999858-38999997 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 57 |
| Conread position: | 163-267 |
| Cow position: | chrX:29032418-29032524 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
Show alignments to all cow chromosomes.