Cow genome map
| Conread name: | rpfco0121_d19.y1 |
| Conread position: | 1-259 |
| Cow position: | chr12:3160605-3160875 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 74 |
| Conread position: | 1-264 |
| Cow position: | chr12:45630266-45629995 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 209 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 186, 35 |
| Conread position: | 1-286 |
| Cow position: | chr12:36568510-36568220 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 72 |
| Conread position: | 1-287 |
| Cow position: | chr12:28572240-28572535 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 65 |
| Conread position: | 1-289 |
| Cow position: | chr12:17716610-17716925 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 37, 78 |
| Conread position: | 1-294 |
| Cow position: | chr12:3039052-3039350 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 72 |
| Conread position: | 1-294 |
| Cow position: | chr12:9482741-9482448 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 151, 57 |
| Conread position: | 1-300 |
| Cow position: | chr12:30918967-30919277 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 34, 76 |
| Conread position: | 1-320 |
| Cow position: | chr12:20655125-20654796 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 34, 210 |
| Conread position: | 1-501 |
| Cow position: | chr12:1890057-1889547 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 338 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 34, 78 |
| Conread position: | 1-501 |
| Cow position: | chr12:19869003-19869493 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 76 |
| Conread position: | 1-501 |
| Cow position: | chr12:31228115-31228603 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 118 |
| Conread position: | 1-501 |
| Cow position: | chr12:42966537-42967026 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 71 |
| Conread position: | 1-501 |
| Cow position: | chr12:47928753-47929231 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 70 |
| Conread position: | 1-503 |
| Cow position: | chr12:2711025-2711531 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 70 |
| Conread position: | 1-503 |
| Cow position: | chr12:3950799-3950312 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 73 |
| Conread position: | 1-503 |
| Cow position: | chr12:15173356-15173856 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 72 |
| Conread position: | 1-503 |
| Cow position: | chr12:15938713-15938233 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 73 |
| Conread position: | 1-503 |
| Cow position: | chr12:19865779-19866275 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 72 |
| Conread position: | 1-503 |
| Cow position: | chr12:26869254-26868781 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 20 |
| Conread position: | 1-503 |
| Cow position: | chr12:27563846-27563344 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 76 |
| Conread position: | 1-503 |
| Cow position: | chr12:40910742-40910252 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 59 |
| Conread position: | 1-504 |
| Cow position: | chr12:28582973-28582474 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 70 |
| Conread position: | 2-287 |
| Cow position: | chr12:31430028-31429727 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 194 |
| Conread position: | 2-501 |
| Cow position: | chr12:7001072-7000573 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 77 |
| Conread position: | 3-326 |
| Cow position: | chr12:18123227-18123571 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 59 |
| Conread position: | 3-449 |
| Cow position: | chr12:18936938-18937386 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 61 |
| Conread position: | 3-501 |
| Cow position: | chr12:3196786-3197299 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 69 |
| Conread position: | 3-501 |
| Cow position: | chr12:5800571-5801071 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 70 |
| Conread position: | 3-503 |
| Cow position: | chr12:35368169-35368675 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 68 |
| Conread position: | 9-501 |
| Cow position: | chr12:15089036-15089546 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 64 |
| Conread position: | 13-452 |
| Cow position: | chr12:22047034-22047453 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 33 |
| Conread position: | 19-287 |
| Cow position: | chr12:7108734-7109031 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 76, 55 |
| Conread position: | 22-255 |
| Cow position: | chr12:38774800-38775053 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 108, 53 |
| Conread position: | 23-501 |
| Cow position: | chr12:29969138-29969610 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 50 |
| Conread position: | 27-287 |
| Cow position: | chr12:35218838-35218563 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 45 |
| Conread position: | 27-484 |
| Cow position: | chr12:22132406-22131929 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 25 |
| Conread position: | 27-503 |
| Cow position: | chr12:29484322-29483853 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 19 |
| Conread position: | 45-287 |
| Cow position: | chr12:40158655-40158396 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 46-503 |
| Cow position: | chr12:42254243-42254700 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 27 |
| Conread position: | 48-287 |
| Cow position: | chr12:39486017-39486276 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 104, 25 |
| Conread position: | 49-501 |
| Cow position: | chr12:6240892-6241350 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 23 |
| Conread position: | 52-287 |
| Cow position: | chr12:8487741-8487486 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 102, 19 |
| Conread position: | 52-503 |
| Cow position: | chr12:42181550-42181096 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 21 |
| Conread position: | 53-498 |
| Cow position: | chr12:19508980-19508531 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 18 |
| Conread position: | 55-499 |
| Cow position: | chr12:30753317-30753748 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 16 |
| Conread position: | 56-258 |
| Cow position: | chr12:13018197-13017983 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 91, 18 |
| Conread position: | 64-255 |
| Cow position: | chr12:15121942-15122140 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 88, 9 |
| Conread position: | 70-289 |
| Cow position: | chr12:28011294-28011054 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 70-484 |
| Cow position: | chr12:22124625-22125062 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 89 |
| Conread position: | 70-497 |
| Cow position: | chr12:20326380-20326801 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 54 |
| Conread position: | 78-499 |
| Cow position: | chr12:17000875-17001287 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 110, 84 |
| Conread position: | 81-287 |
| Cow position: | chr12:6227015-6226808 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 71, 106 |
| Conread position: | 86-501 |
| Cow position: | chr12:25560992-25561400 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 302 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 62, 95 |
| Conread position: | 88-469 |
| Cow position: | chr12:6698400-6698782 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 5, 169 |
| Conread position: | 89-503 |
| Cow position: | chr12:41580741-41581143 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 173 |
| Conread position: | 91-495 |
| Cow position: | chr12:47803781-47804182 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 162 |
| Conread position: | 97-287 |
| Cow position: | chr12:17881504-17881705 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 103-285 |
| Cow position: | chr12:18577486-18577687 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 49, 13 |
| Conread position: | 110-503 |
| Cow position: | chr12:33323853-33323463 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 282 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 37, 169 |
| Conread position: | 119-337 |
| Cow position: | chr12:4342067-4341829 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 119-493 |
| Cow position: | chr12:2812881-2813250 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 29, 159 |
| Conread position: | 119-503 |
| Cow position: | chr12:9710551-9710175 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 131-501 |
| Cow position: | chr12:34466330-34465973 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 19, 59 |
| Conread position: | 132-439 |
| Cow position: | chr12:46143489-46143792 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 20, 147 |
| Conread position: | 139-487 |
| Cow position: | chr12:941308-941657 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 26, 38 |
| Conread position: | 141-501 |
| Cow position: | chr12:8869206-8868851 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 262 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 15, 112 |
| Conread position: | 144-502 |
| Cow position: | chr12:37994043-37993700 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 45, 107 |
| Conread position: | 146-444 |
| Cow position: | chr12:37481446-37481140 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 50, 118 |
| Conread position: | 147-455 |
| Cow position: | chr12:26782566-26782870 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 51, 117 |
| Conread position: | 147-501 |
| Cow position: | chr12:30745398-30745747 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 50, 126 |
| Conread position: | 148-503 |
| Cow position: | chr12:29995776-29995431 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 50, 108 |
| Conread position: | 155-501 |
| Cow position: | chr12:33457843-33458178 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 39, 14 |
| Conread position: | 156-444 |
| Cow position: | chr12:28650651-28650932 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 39, 94 |
| Conread position: | 156-503 |
| Cow position: | chr12:8943526-8943191 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 98 |
| Conread position: | 157-444 |
| Cow position: | chr12:25455809-25456094 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 32, 98 |
| Conread position: | 159-462 |
| Cow position: | chr12:27563136-27562835 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 55, 101 |
| Conread position: | 159-503 |
| Cow position: | chr12:4866513-4866850 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 255 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 34, 103 |
| Conread position: | 160-484 |
| Cow position: | chr12:3956077-3955759 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 38, 57 |
| Conread position: | 161-503 |
| Cow position: | chr12:44518040-44517705 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 260 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 13, 97 |
| Conread position: | 162-408 |
| Cow position: | chr12:17486437-17486175 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 36, 186 |
| Conread position: | 164-505 |
| Cow position: | chr12:34007001-34007336 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 34, 103 |
| Conread position: | 165-501 |
| Cow position: | chr12:5714332-5714660 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 252 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 29, 89 |
| Conread position: | 165-501 |
| Cow position: | chr12:5905760-5906087 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 33, 94 |
| Conread position: | 165-504 |
| Cow position: | chr12:40270383-40270032 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 33, 77 |
| Conread position: | 166-500 |
| Cow position: | chr12:20777225-20776894 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 27, 115 |
| Conread position: | 167-503 |
| Cow position: | chr12:9914494-9914822 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 111 |
| Conread position: | 168-438 |
| Cow position: | chr12:32391551-32391817 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 30, 109 |
| Conread position: | 171-501 |
| Cow position: | chr12:32169245-32169571 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 7 |
| Conread position: | 172-463 |
| Cow position: | chr12:43551574-43551263 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 24, 145 |
| Conread position: | 195-503 |
| Cow position: | chr12:3906210-3906506 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 16, 51 |
| Conread position: | 209-505 |
| Cow position: | chr12:24211173-24211442 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 34, 42 |
| Conread position: | 215-503 |
| Cow position: | chr12:20071822-20071540 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 216-481 |
| Cow position: | chr12:13996271-13996010 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 238-502 |
| Cow position: | chr12:4596240-4596496 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 54, 28 |
| Conread position: | 277-492 |
| Cow position: | chr12:4820761-4820983 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 115 |
| Conread position: | 282-496 |
| Cow position: | chr12:40028945-40028728 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 32 |
| Conread position: | 284-503 |
| Cow position: | chr12:28257236-28257023 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 41, 107 |
| Conread position: | 288-500 |
| Cow position: | chr12:18420288-18420500 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 13, 87 |
| Conread position: | 288-503 |
| Cow position: | chr12:17774616-17774827 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 9, 79 |
| Conread position: | 288-503 |
| Cow position: | chr12:23855658-23855869 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 106, 18 |
| Conread position: | 308-502 |
| Cow position: | chr12:19258117-19258308 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 112, 166 |
| Conread position: | 311-498 |
| Cow position: | chr12:3623535-3623722 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 110, 88 |
| Conread position: | 320-496 |
| Cow position: | chr12:44919884-44920061 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 100, 156 |
| Conread position: | 322-499 |
| Cow position: | chr12:46120978-46120803 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 99, 76 |
| Conread position: | 322-501 |
| Cow position: | chr12:5940200-5940372 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 99, 63 |
| Conread position: | 322-503 |
| Cow position: | chr12:36790959-36790779 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 79 |
| Conread position: | 322-503 |
| Cow position: | chr12:38774387-38774210 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 149 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 86, 72 |
| Conread position: | 323-503 |
| Cow position: | chr12:11587626-11587807 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 42, 48 |
| Conread position: | 324-444 |
| Cow position: | chr12:38511984-38511861 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 324-463 |
| Cow position: | chr12:30476336-30476477 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 97, 81 |
| Conread position: | 324-481 |
| Cow position: | chr12:29921929-29921774 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 97, 70 |
| Conread position: | 324-493 |
| Cow position: | chr12:22287127-22287296 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 92, 66 |
| Conread position: | 324-496 |
| Cow position: | chr12:41473945-41474115 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 74, 49 |
| Conread position: | 324-497 |
| Cow position: | chr12:4162512-4162336 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 69, 23 |
| Conread position: | 324-499 |
| Cow position: | chr12:27365780-27365957 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 68, 84 |
| Conread position: | 324-501 |
| Cow position: | chr12:5635593-5635422 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 97, 55 |
| Conread position: | 324-501 |
| Cow position: | chr12:6410878-6410703 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 97, 33 |
| Conread position: | 324-501 |
| Cow position: | chr12:12300775-12300950 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 96, 70 |
| Conread position: | 324-501 |
| Cow position: | chr12:18943804-18943627 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 324-501 |
| Cow position: | chr12:23446576-23446751 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 73, 55 |
| Conread position: | 324-501 |
| Cow position: | chr12:25452593-25452416 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 150 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 324-501 |
| Cow position: | chr12:26217972-26217793 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 97, 147 |
| Conread position: | 324-501 |
| Cow position: | chr12:37732930-37732749 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 149 |
| Conread position: | 324-501 |
| Cow position: | chr12:41216030-41215854 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 70, 141 |
| Conread position: | 324-502 |
| Cow position: | chr12:6242321-6242147 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 324-503 |
| Cow position: | chr12:15783777-15783954 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 324-503 |
| Cow position: | chr12:18964073-18963895 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 97, 75 |
| Conread position: | 324-503 |
| Cow position: | chr12:23916697-23916875 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 66, 83 |
| Conread position: | 324-503 |
| Cow position: | chr12:28748794-28748974 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 67, 152 |
| Conread position: | 324-503 |
| Cow position: | chr12:31947972-31948151 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 96, 66 |
| Conread position: | 324-503 |
| Cow position: | chr12:38184451-38184627 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 96, 75 |
| Conread position: | 324-503 |
| Cow position: | chr12:41658869-41658692 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 324-503 |
| Cow position: | chr12:45090504-45090319 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 77, 153 |
| Conread position: | 324-505 |
| Cow position: | chr12:20636302-20636117 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 82, 149 |
| Conread position: | 325-471 |
| Cow position: | chr12:25340369-25340522 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 56, 69 |
| Conread position: | 325-492 |
| Cow position: | chr12:25320777-25320936 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 325-497 |
| Cow position: | chr12:6102972-6102801 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 46, 75 |
| Conread position: | 325-505 |
| Cow position: | chr12:19664673-19664497 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 326-467 |
| Cow position: | chr12:24107689-24107547 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 95, 68 |
| Conread position: | 326-490 |
| Cow position: | chr12:30805710-30805874 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 95, 73 |
| Conread position: | 326-501 |
| Cow position: | chr12:7110056-7110228 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 94, 73 |
| Conread position: | 326-501 |
| Cow position: | chr12:18766122-18765942 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 63, 84 |
| Conread position: | 326-501 |
| Cow position: | chr12:19715184-19715009 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 82, 68 |
| Conread position: | 326-501 |
| Cow position: | chr12:42174276-42174447 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 94, 64 |
| Conread position: | 326-503 |
| Cow position: | chr12:3599896-3599727 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 95, 71 |
| Conread position: | 326-503 |
| Cow position: | chr12:15050761-15050590 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 94, 140 |
| Conread position: | 326-503 |
| Cow position: | chr12:15163006-15163172 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 95, 68 |
| Conread position: | 326-503 |
| Cow position: | chr12:23797959-23798132 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 95, 72 |
| Conread position: | 327-503 |
| Cow position: | chr12:9894641-9894815 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 93, 75 |
| Conread position: | 327-505 |
| Cow position: | chr12:33976057-33976234 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 94, 70 |
| Conread position: | 328-498 |
| Cow position: | chr12:29675279-29675114 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 92, 24 |
| Conread position: | 328-503 |
| Cow position: | chr12:12579166-12579000 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 331-501 |
| Cow position: | chr12:30590628-30590798 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 89, 68 |
| Conread position: | 335-501 |
| Cow position: | chr12:1333094-1333262 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 69, 6 |
| Conread position: | 336-500 |
| Cow position: | chr12:37008839-37008677 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 133 |
| Conread position: | 339-501 |
| Cow position: | chr12:4341870-4341713 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 81, 14 |
| Conread position: | 339-503 |
| Cow position: | chr12:24152206-24152371 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 82, 59 |
| Conread position: | 345-503 |
| Cow position: | chr12:16056985-16056825 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 60, 126 |
| Conread position: | 348-503 |
| Cow position: | chr12:18572507-18572657 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 75, 90 |
| Conread position: | 349-501 |
| Cow position: | chr12:31517294-31517140 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 64, 50 |
| Conread position: | 353-503 |
| Cow position: | chr12:30799211-30799059 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 55, 125 |
| Conread position: | 353-504 |
| Cow position: | chr12:25280621-25280468 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 124 |
| Conread position: | 358-503 |
| Cow position: | chr12:35241213-35241072 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 360-490 |
| Cow position: | chr12:25192940-25193070 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 60, 34 |
| Conread position: | 360-503 |
| Cow position: | chr12:18523453-18523602 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 361-499 |
| Cow position: | chr12:30414057-30413918 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 51, 38 |
Show alignments to all cow chromosomes.