Cow genome map

Conread name: rpfco0121_d19.y1

Conread position: 1-241
Cow position:
Alignm length: 254
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 72

Conread position: 1-262
Cow position:
Alignm length: 278
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 72

Conread position: 1-269
Cow position:
Alignm length: 286
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 73

Conread position: 1-275
Cow position:
Alignm length: 286
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 72

Conread position: 1-286
Cow position:
Alignm length: 303
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 72

Conread position: 1-286
Cow position:
Alignm length: 310
Alignm identity: 208
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 42, 70

Conread position: 1-287
Cow position:
Alignm length: 319
Alignm identity: 225
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 39, 74

Conread position: 1-287
Cow position:
Alignm length: 309
Alignm identity: 229
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 72, 115

Conread position: 1-287
Cow position:
Alignm length: 293
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 62

Conread position: 1-287
Cow position:
Alignm length: 310
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 53

Conread position: 1-289
Cow position:
Alignm length: 309
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 78

Conread position: 1-293
Cow position:
Alignm length: 313
Alignm identity: 223
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 154, 71

Conread position: 1-299
Cow position:
Alignm length: 320
Alignm identity: 232
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 157, 50

Conread position: 1-302
Cow position:
Alignm length: 318
Alignm identity: 229
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 151, 60

Conread position: 1-336
Cow position:
Alignm length: 350
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 42

Conread position: 1-444
Cow position:
Alignm length: 469
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 15

Conread position: 1-445
Cow position:
Alignm length: 467
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 72

Conread position: 1-467
Cow position:
Alignm length: 481
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 72

Conread position: 1-468
Cow position:
Alignm length: 485
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 71

Conread position: 1-468
Cow position:
Alignm length: 483
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 42

Conread position: 1-497
Cow position:
Alignm length: 519
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 72

Conread position: 1-501
Cow position:
Alignm length: 523
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 72

Conread position: 1-501
Cow position:
Alignm length: 520
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 79

Conread position: 1-503
Cow position:
Alignm length: 523
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 108

Conread position: 1-503
Cow position:
Alignm length: 518
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 70

Conread position: 2-287
Cow position:
Alignm length: 299
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 69

Conread position: 2-287
Cow position:
Alignm length: 304
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 70

Conread position: 2-493
Cow position:
Alignm length: 517
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 82

Conread position: 2-503
Cow position:
Alignm length: 508
Alignm identity: 332
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 212, 25

Conread position: 3-464
Cow position:
Alignm length: 479
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 70

Conread position: 3-501
Cow position:
Alignm length: 509
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 74

Conread position: 4-287
Cow position:
Alignm length: 306
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 69

Conread position: 5-247
Cow position:
Alignm length: 254
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 67

Conread position: 5-503
Cow position:
Alignm length: 516
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 52

Conread position: 7-501
Cow position:
Alignm length: 515
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 71

Conread position: 13-496
Cow position:
Alignm length: 498
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 12

Conread position: 13-505
Cow position:
Alignm length: 505
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 58

Conread position: 18-264
Cow position:
Alignm length: 259
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 55

Conread position: 27-503
Cow position:
Alignm length: 498
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 46

Conread position: 36-264
Cow position:
Alignm length: 249
Alignm identity: 194
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 111, 37

Conread position: 36-455
Cow position:
Alignm length: 436
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 37

Conread position: 36-498
Cow position:
Alignm length: 480
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 36

Conread position: 38-287
Cow position:
Alignm length: 274
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 35

Conread position: 44-502
Cow position:
Alignm length: 469
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 17

Conread position: 45-287
Cow position:
Alignm length: 252
Alignm identity: 191
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 153, 26

Conread position: 45-499
Cow position:
Alignm length: 475
Alignm identity: 318
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 109, 26

Conread position: 53-287
Cow position:
Alignm length: 238
Alignm identity: 169
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 190, 18

Conread position: 87-499
Cow position:
Alignm length: 428
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 192

Conread position: 98-503
Cow position:
Alignm length: 433
Alignm identity: 298
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 56, 180

Conread position: 114-286
Cow position:
Alignm length: 190
Alignm identity: 147
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 38, 170

Conread position: 123-444
Cow position:
Alignm length: 335
Alignm identity: 226
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 75, 38

Conread position: 133-503
Cow position:
Alignm length: 395
Alignm identity: 277
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 21, 126

Conread position: 146-501
Cow position:
Alignm length: 366
Alignm identity: 253
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 49, 10

Conread position: 148-501
Cow position:
Alignm length: 379
Alignm identity: 255
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 47, 8

Conread position: 151-501
Cow position:
Alignm length: 366
Alignm identity: 268
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 43, 21

Conread position: 153-473
Cow position:
Alignm length: 332
Alignm identity: 238
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 42, 107

Conread position: 153-503
Cow position:
Alignm length: 365
Alignm identity: 260
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 41, 99

Conread position: 156-287
Cow position:
Alignm length: 147
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 156-501
Cow position:
Alignm length: 361
Alignm identity: 250
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 40, 100

Conread position: 156-501
Cow position:
Alignm length: 356
Alignm identity: 254
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 37, 83

Conread position: 157-503
Cow position:
Alignm length: 369
Alignm identity: 249
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 53, 256

Conread position: 157-503
Cow position:
Alignm length: 350
Alignm identity: 247
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 63, 45

Conread position: 158-329
Cow position:
Alignm length: 189
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 161-285
Cow position:
Alignm length: 138
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 161-499
Cow position:
Alignm length: 350
Alignm identity: 250
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 34, 113

Conread position: 161-501
Cow position:
Alignm length: 354
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 95

Conread position: 163-505
Cow position:
Alignm length: 356
Alignm identity: 245
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 35, 118

Conread position: 164-504
Cow position:
Alignm length: 358
Alignm identity: 257
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 46, 95

Conread position: 167-444
Cow position:
Alignm length: 292
Alignm identity: 211
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 29, 100

Conread position: 168-499
Cow position:
Alignm length: 343
Alignm identity: 246
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 26, 110

Conread position: 207-500
Cow position:
Alignm length: 297
Alignm identity: 212
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 97, 38

Conread position: 209-505
Cow position:
Alignm length: 300
Alignm identity: 221
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 34, 55

Conread position: 210-437
Cow position:
Alignm length: 232
Alignm identity: 167
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 59, 35

Conread position: 220-503
Cow position:
Alignm length: 297
Alignm identity: 220
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 161, 37

Conread position: 247-501
Cow position:
Alignm length: 259
Alignm identity: 171
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 14, 70

Conread position: 275-471
Cow position:
Alignm length: 199
Alignm identity: 138
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 146, 47

Conread position: 277-454
Cow position:
Alignm length: 181
Alignm identity: 127
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 20, 125

Conread position: 288-503
Cow position:
Alignm length: 228
Alignm identity: 168
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 8, 188

Conread position: 291-464
Cow position:
Alignm length: 181
Alignm identity: 135
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 111, 0

Conread position: 297-503
Cow position:
Alignm length: 207
Alignm identity: 142
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 305-500
Cow position:
Alignm length: 201
Alignm identity: 151
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 96, 168

Conread position: 308-503
Cow position:
Alignm length: 201
Alignm identity: 158
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 15, 165

Conread position: 310-503
Cow position:
Alignm length: 196
Alignm identity: 145
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 93, 12

Conread position: 314-503
Cow position:
Alignm length: 192
Alignm identity: 152
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 107, 85

Conread position: 321-439
Cow position:
Alignm length: 122
Alignm identity: 99
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 60, 84

Conread position: 322-457
Cow position:
Alignm length: 138
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 99, 77

Conread position: 322-499
Cow position:
Alignm length: 181
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 77, 50

Conread position: 322-500
Cow position:
Alignm length: 181
Alignm identity: 131
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 90, 68

Conread position: 322-500
Cow position:
Alignm length: 181
Alignm identity: 132
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 98, 79

Conread position: 322-501
Cow position:
Alignm length: 185
Alignm identity: 141
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 75, 39

Conread position: 322-503
Cow position:
Alignm length: 185
Alignm identity: 131
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 67, 7

Conread position: 323-498
Cow position:
Alignm length: 177
Alignm identity: 130
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 96, 56

Conread position: 323-498
Cow position:
Alignm length: 177
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 100, 66

Conread position: 324-434
Cow position:
Alignm length: 113
Alignm identity: 91
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 97, 74

Conread position: 324-455
Cow position:
Alignm length: 137
Alignm identity: 103
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 324-455
Cow position:
Alignm length: 134
Alignm identity: 106
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 97, 74

Conread position: 324-464
Cow position:
Alignm length: 143
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 96, 69

Conread position: 324-483
Cow position:
Alignm length: 162
Alignm identity: 123
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 97, 144

Conread position: 324-484
Cow position:
Alignm length: 169
Alignm identity: 127
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 45, 139

Conread position: 324-490
Cow position:
Alignm length: 169
Alignm identity: 127
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 97, 33

Conread position: 324-497
Cow position:
Alignm length: 175
Alignm identity: 132
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 95, 65

Conread position: 324-498
Cow position:
Alignm length: 177
Alignm identity: 131
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 96, 58

Conread position: 324-498
Cow position:
Alignm length: 177
Alignm identity: 128
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 92, 63

Conread position: 324-498
Cow position:
Alignm length: 179
Alignm identity: 132
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 96, 65

Conread position: 324-501
Cow position:
Alignm length: 180
Alignm identity: 141
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 97, 25

Conread position: 324-501
Cow position:
Alignm length: 181
Alignm identity: 143
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 45, 147

Conread position: 324-501
Cow position:
Alignm length: 180
Alignm identity: 140
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 97, 75

Conread position: 324-502
Cow position:
Alignm length: 185
Alignm identity: 139
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 96, 70

Conread position: 324-503
Cow position:
Alignm length: 183
Alignm identity: 127
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 75, 147

Conread position: 324-503
Cow position:
Alignm length: 185
Alignm identity: 131
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 149

Conread position: 324-503
Cow position:
Alignm length: 182
Alignm identity: 143
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 42, 50

Conread position: 324-503
Cow position:
Alignm length: 182
Alignm identity: 152
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 97, 75

Conread position: 324-503
Cow position:
Alignm length: 186
Alignm identity: 145
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 77, 155

Conread position: 324-503
Cow position:
Alignm length: 184
Alignm identity: 135
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 83, 66

Conread position: 324-505
Cow position:
Alignm length: 185
Alignm identity: 138
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 96, 55

Conread position: 324-505
Cow position:
Alignm length: 186
Alignm identity: 141
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 82, 75

Conread position: 325-463
Cow position:
Alignm length: 142
Alignm identity: 109
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 64, 31

Conread position: 325-499
Cow position:
Alignm length: 177
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 96, 27

Conread position: 326-482
Cow position:
Alignm length: 159
Alignm identity: 126
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 78, 144

Conread position: 326-495
Cow position:
Alignm length: 171
Alignm identity: 127
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 70, 141

Conread position: 326-501
Cow position:
Alignm length: 178
Alignm identity: 131
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 94, 30

Conread position: 326-503
Cow position:
Alignm length: 183
Alignm identity: 146
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 78, 133

Conread position: 326-503
Cow position:
Alignm length: 180
Alignm identity: 131
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 95, 11

Conread position: 326-503
Cow position:
Alignm length: 178
Alignm identity: 135
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 68, 0

Conread position: 326-505
Cow position:
Alignm length: 182
Alignm identity: 139
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 94, 62

Conread position: 327-444
Cow position:
Alignm length: 125
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 327-444
Cow position:
Alignm length: 121
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 67, 20

Conread position: 328-501
Cow position:
Alignm length: 177
Alignm identity: 133
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 65, 0

Conread position: 328-503
Cow position:
Alignm length: 184
Alignm identity: 131
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 92, 146

Conread position: 335-501
Cow position:
Alignm length: 169
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 81, 104

Conread position: 337-501
Cow position:
Alignm length: 169
Alignm identity: 128
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 65, 107

Conread position: 338-503
Cow position:
Alignm length: 171
Alignm identity: 125
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 32, 53

Conread position: 342-503
Cow position:
Alignm length: 163
Alignm identity: 124
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 19, 58

Conread position: 349-499
Cow position:
Alignm length: 152
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 74, 38

Conread position: 350-491
Cow position:
Alignm length: 145
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 5, 50

Conread position: 353-501
Cow position:
Alignm length: 152
Alignm identity: 122
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 54, 46

Conread position: 361-505
Cow position:
Alignm length: 146
Alignm identity: 115
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 33, 39

Show alignments to all cow chromosomes.