Cow genome map

Conread name: rpfco0121_d19.y1

Conread position: 1-238
Cow position:
Alignm length: 245
Alignm identity: 177
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 46, 73

Conread position: 1-287
Cow position:
Alignm length: 298
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 72

Conread position: 1-287
Cow position:
Alignm length: 301
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 279

Conread position: 1-287
Cow position:
Alignm length: 298
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 71

Conread position: 1-287
Cow position:
Alignm length: 293
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 68

Conread position: 1-288
Cow position:
Alignm length: 309
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 72

Conread position: 1-308
Cow position:
Alignm length: 326
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 6

Conread position: 1-350
Cow position:
Alignm length: 366
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 70

Conread position: 1-445
Cow position:
Alignm length: 466
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 116

Conread position: 1-492
Cow position:
Alignm length: 508
Alignm identity: 347
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 25, 81

Conread position: 1-493
Cow position:
Alignm length: 511
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 250

Conread position: 1-496
Cow position:
Alignm length: 509
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 47

Conread position: 1-501
Cow position:
Alignm length: 531
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 78

Conread position: 1-501
Cow position:
Alignm length: 528
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 122

Conread position: 1-503
Cow position:
Alignm length: 519
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 20

Conread position: 1-503
Cow position:
Alignm length: 512
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 70

Conread position: 1-505
Cow position:
Alignm length: 521
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 80

Conread position: 2-492
Cow position:
Alignm length: 506
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 71

Conread position: 2-501
Cow position:
Alignm length: 522
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 69

Conread position: 2-501
Cow position:
Alignm length: 516
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 72

Conread position: 2-503
Cow position:
Alignm length: 511
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 71

Conread position: 3-500
Cow position:
Alignm length: 505
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 48

Conread position: 3-503
Cow position:
Alignm length: 506
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 69

Conread position: 5-289
Cow position:
Alignm length: 305
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 66

Conread position: 5-501
Cow position:
Alignm length: 515
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 66

Conread position: 5-503
Cow position:
Alignm length: 550
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 69

Conread position: 12-504
Cow position:
Alignm length: 508
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 63

Conread position: 34-501
Cow position:
Alignm length: 488
Alignm identity: 337
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 74, 9

Conread position: 44-436
Cow position:
Alignm length: 407
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 17

Conread position: 46-353
Cow position:
Alignm length: 328
Alignm identity: 223
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 50, 28

Conread position: 47-287
Cow position:
Alignm length: 249
Alignm identity: 179
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 153, 24

Conread position: 68-503
Cow position:
Alignm length: 453
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 38

Conread position: 81-285
Cow position:
Alignm length: 220
Alignm identity: 162
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 72, 0

Conread position: 88-501
Cow position:
Alignm length: 431
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 179

Conread position: 89-239
Cow position:
Alignm length: 158
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 92-505
Cow position:
Alignm length: 429
Alignm identity: 276
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 113, 106

Conread position: 98-498
Cow position:
Alignm length: 413
Alignm identity: 284
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 51, 8

Conread position: 101-503
Cow position:
Alignm length: 425
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 6

Conread position: 108-504
Cow position:
Alignm length: 413
Alignm identity: 284
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 44, 65

Conread position: 123-501
Cow position:
Alignm length: 396
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 162

Conread position: 128-468
Cow position:
Alignm length: 350
Alignm identity: 225
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 101

Conread position: 132-497
Cow position:
Alignm length: 383
Alignm identity: 267
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 16, 148

Conread position: 136-501
Cow position:
Alignm length: 383
Alignm identity: 265
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 10, 130

Conread position: 147-499
Cow position:
Alignm length: 365
Alignm identity: 255
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 38, 106

Conread position: 148-397
Cow position:
Alignm length: 250
Alignm identity: 175
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 85, 0

Conread position: 155-503
Cow position:
Alignm length: 357
Alignm identity: 243
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 43, 62

Conread position: 156-444
Cow position:
Alignm length: 297
Alignm identity: 202
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 15, 95

Conread position: 156-482
Cow position:
Alignm length: 336
Alignm identity: 225
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 61

Conread position: 157-501
Cow position:
Alignm length: 347
Alignm identity: 227
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 41, 74

Conread position: 161-497
Cow position:
Alignm length: 347
Alignm identity: 243
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 28, 94

Conread position: 161-505
Cow position:
Alignm length: 363
Alignm identity: 251
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 37, 113

Conread position: 162-503
Cow position:
Alignm length: 357
Alignm identity: 245
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 32, 114

Conread position: 170-457
Cow position:
Alignm length: 301
Alignm identity: 217
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 28, 94

Conread position: 172-498
Cow position:
Alignm length: 338
Alignm identity: 236
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 22, 82

Conread position: 173-503
Cow position:
Alignm length: 344
Alignm identity: 246
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 25, 91

Conread position: 179-503
Cow position:
Alignm length: 337
Alignm identity: 238
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 15, 84

Conread position: 188-501
Cow position:
Alignm length: 324
Alignm identity: 236
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 26, 84

Conread position: 188-501
Cow position:
Alignm length: 325
Alignm identity: 230
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 22, 108

Conread position: 213-501
Cow position:
Alignm length: 299
Alignm identity: 205
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 177, 32

Conread position: 214-464
Cow position:
Alignm length: 259
Alignm identity: 191
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 29, 80

Conread position: 276-503
Cow position:
Alignm length: 231
Alignm identity: 169
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 47, 36

Conread position: 282-432
Cow position:
Alignm length: 154
Alignm identity: 118
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 15, 10

Conread position: 284-446
Cow position:
Alignm length: 168
Alignm identity: 124
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 284-446
Cow position:
Alignm length: 168
Alignm identity: 124
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 297-501
Cow position:
Alignm length: 209
Alignm identity: 154
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 100, 21

Conread position: 297-503
Cow position:
Alignm length: 215
Alignm identity: 149
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 67, 177

Conread position: 318-503
Cow position:
Alignm length: 188
Alignm identity: 148
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 103, 81

Conread position: 322-501
Cow position:
Alignm length: 184
Alignm identity: 139
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 87, 150

Conread position: 322-501
Cow position:
Alignm length: 180
Alignm identity: 126
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 322-503
Cow position:
Alignm length: 184
Alignm identity: 146
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 98, 46

Conread position: 322-505
Cow position:
Alignm length: 186
Alignm identity: 145
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 99, 47

Conread position: 322-505
Cow position:
Alignm length: 191
Alignm identity: 147
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 48, 82

Conread position: 324-435
Cow position:
Alignm length: 118
Alignm identity: 95
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 324-459
Cow position:
Alignm length: 138
Alignm identity: 112
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 92, 75

Conread position: 324-460
Cow position:
Alignm length: 148
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 79, 55

Conread position: 324-493
Cow position:
Alignm length: 173
Alignm identity: 133
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 84, 145

Conread position: 324-499
Cow position:
Alignm length: 180
Alignm identity: 134
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 73, 148

Conread position: 324-501
Cow position:
Alignm length: 187
Alignm identity: 142
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 80, 153

Conread position: 324-501
Cow position:
Alignm length: 182
Alignm identity: 142
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 96, 53

Conread position: 324-501
Cow position:
Alignm length: 182
Alignm identity: 134
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 78, 154

Conread position: 324-501
Cow position:
Alignm length: 180
Alignm identity: 135
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 97, 70

Conread position: 324-501
Cow position:
Alignm length: 181
Alignm identity: 136
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 23, 59

Conread position: 324-501
Cow position:
Alignm length: 180
Alignm identity: 142
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 97, 66

Conread position: 324-501
Cow position:
Alignm length: 180
Alignm identity: 139
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 96, 78

Conread position: 324-503
Cow position:
Alignm length: 181
Alignm identity: 137
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 95, 41

Conread position: 324-503
Cow position:
Alignm length: 184
Alignm identity: 151
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 66, 82

Conread position: 324-503
Cow position:
Alignm length: 182
Alignm identity: 132
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 96, 146

Conread position: 324-503
Cow position:
Alignm length: 184
Alignm identity: 144
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 73, 146

Conread position: 324-504
Cow position:
Alignm length: 183
Alignm identity: 135
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 96, 28

Conread position: 324-505
Cow position:
Alignm length: 184
Alignm identity: 149
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 97, 55

Conread position: 325-486
Cow position:
Alignm length: 166
Alignm identity: 127
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 84, 9

Conread position: 325-486
Cow position:
Alignm length: 164
Alignm identity: 124
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 96, 72

Conread position: 325-498
Cow position:
Alignm length: 178
Alignm identity: 130
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 80, 142

Conread position: 325-503
Cow position:
Alignm length: 181
Alignm identity: 137
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 95, 65

Conread position: 325-503
Cow position:
Alignm length: 181
Alignm identity: 137
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 95, 70

Conread position: 326-496
Cow position:
Alignm length: 174
Alignm identity: 129
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 83, 68

Conread position: 326-499
Cow position:
Alignm length: 184
Alignm identity: 136
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 71, 43

Conread position: 326-503
Cow position:
Alignm length: 182
Alignm identity: 139
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 18, 5

Conread position: 326-503
Cow position:
Alignm length: 180
Alignm identity: 144
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 94, 73

Conread position: 326-505
Cow position:
Alignm length: 185
Alignm identity: 139
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 73, 137

Conread position: 327-495
Cow position:
Alignm length: 172
Alignm identity: 124
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 77, 144

Conread position: 327-500
Cow position:
Alignm length: 176
Alignm identity: 139
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 96, 72

Conread position: 328-502
Cow position:
Alignm length: 176
Alignm identity: 133
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 91, 61

Conread position: 331-503
Cow position:
Alignm length: 175
Alignm identity: 139
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 89, 59

Conread position: 331-503
Cow position:
Alignm length: 175
Alignm identity: 138
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 90, 68

Conread position: 336-504
Cow position:
Alignm length: 171
Alignm identity: 135
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 85, 63

Conread position: 336-505
Cow position:
Alignm length: 172
Alignm identity: 129
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 85, 63

Conread position: 353-493
Cow position:
Alignm length: 144
Alignm identity: 114
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 17, 80

Conread position: 359-501
Cow position:
Alignm length: 145
Alignm identity: 113
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 62, 111

Conread position: 374-503
Cow position:
Alignm length: 132
Alignm identity: 107
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 47, 28

Show alignments to all cow chromosomes.