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Cow genome map

           
Conread name:
           
rpfco0121_d19.y1
        

               
Conread position:
               
1-286
               

               
Cow position:
               
chr5:64844516-64844216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 70
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr5:20408057-20407760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 72
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr5:31480754-31481053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 72
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr5:35144944-35145256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 79
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr5:46510267-46509959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 70
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr5:58004846-58005161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 72
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr5:34192553-34192861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 76
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr5:44848413-44848107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 76
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr5:72046043-72045682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 45
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr5:50637436-50637800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 45
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr5:14415373-14415777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
61, 45
               

               
Conread position:
               
1-439
               

               
Cow position:
               
chr5:6129957-6130388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 70
               

               
Conread position:
               
1-444
               

               
Cow position:
               
chr5:16184693-16185127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 71
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr5:6086964-6086516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 72
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chr5:14420744-14420299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 70
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chr5:34115243-34115702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 76
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chr5:7140483-7140056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 73
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr5:62827153-62826702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 70
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr5:27403639-27403173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 70
               

               
Conread position:
               
1-464
               

               
Cow position:
               
chr5:3639926-3639428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 72
               

               
Conread position:
               
1-469
               

               
Cow position:
               
chr5:54405294-54404826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 73
               

               
Conread position:
               
1-471
               

               
Cow position:
               
chr5:2500592-2500113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 70
               

               
Conread position:
               
1-493
               

               
Cow position:
               
chr5:21828457-21828955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 72
               

               
Conread position:
               
1-496
               

               
Cow position:
               
chr5:8024589-8024110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
93, 70
               

               
Conread position:
               
1-497
               

               
Cow position:
               
chr5:360341-359848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 56
               

               
Conread position:
               
1-497
               

               
Cow position:
               
chr5:33414804-33414320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 72
               

               
Conread position:
               
1-498
               

               
Cow position:
               
chr5:3204440-3204922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 15
               

               
Conread position:
               
1-498
               

               
Cow position:
               
chr5:9090404-9089931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 47
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr5:6044887-6045391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 72
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr5:16894168-16893676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 70
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr5:26378066-26377572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 75
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr5:28224061-28224547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 66
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr5:29827654-29828142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 73
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr5:29903921-29903428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 72
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr5:37645666-37646176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 72
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr5:39447933-39447440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 26
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr5:41546289-41545798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 71
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr5:47601412-47601907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 70
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr5:50821389-50821878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 70
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr5:52165578-52165083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 72
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr5:57935504-57935013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 24
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr5:65776796-65776290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 57
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr5:65887413-65886915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 107
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr5:15478710-15479223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 70
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr5:21040373-21039886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 70
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr5:21524766-21525256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 72
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr5:24348722-24349204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 72
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr5:34463983-34463481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 72
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr5:55756838-55756318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 70
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr5:61839789-61840285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 70
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr5:66815979-66815475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 6
               

               
Conread position:
               
1-505
               

               
Cow position:
               
chr5:44752718-44752208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 78
               

               
Conread position:
               
2-287
               

               
Cow position:
               
chr5:24485807-24485529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 41
               

               
Conread position:
               
2-503
               

               
Cow position:
               
chr5:2309979-2309459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 70
               

               
Conread position:
               
3-353
               

               
Cow position:
               
chr5:26096898-26097269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
3-454
               

               
Cow position:
               
chr5:41523184-41522753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 47
               

               
Conread position:
               
3-502
               

               
Cow position:
               
chr5:66972005-66972525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 70
               

               
Conread position:
               
3-504
               

               
Cow position:
               
chr5:35826204-35826700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 70
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chr5:50573361-50573664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 67
               

               
Conread position:
               
5-503
               

               
Cow position:
               
chr5:14550982-14550487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 68
               

               
Conread position:
               
7-287
               

               
Cow position:
               
chr5:12672418-12672123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
35, 71
               

               
Conread position:
               
8-501
               

               
Cow position:
               
chr5:16508700-16509201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 54
               

               
Conread position:
               
9-453
               

               
Cow position:
               
chr5:26790835-26790407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 62
               

               
Conread position:
               
11-497
               

               
Cow position:
               
chr5:53855313-53855797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 62
               

               
Conread position:
               
15-278
               

               
Cow position:
               
chr5:19470568-19470294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 58
               

               
Conread position:
               
17-501
               

               
Cow position:
               
chr5:72564376-72564859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 56
               

               
Conread position:
               
19-503
               

               
Cow position:
               
chr5:54310948-54311433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 50
               

               
Conread position:
               
20-501
               

               
Cow position:
               
chr5:4710524-4710057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 51
               

               
Conread position:
               
27-503
               

               
Cow position:
               
chr5:47317341-47316877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 46
               

               
Conread position:
               
28-498
               

               
Cow position:
               
chr5:65933301-65932851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 43
               

               
Conread position:
               
38-490
               

               
Cow position:
               
chr5:40357249-40356762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 35
               

               
Conread position:
               
38-497
               

               
Cow position:
               
chr5:46122690-46122262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
155, 35
               

               
Conread position:
               
42-499
               

               
Cow position:
               
chr5:58793972-58793514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 31
               

               
Conread position:
               
42-503
               

               
Cow position:
               
chr5:28035363-28035840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
52-467
               

               
Cow position:
               
chr5:28927945-28927523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 21
               

               
Conread position:
               
53-413
               

               
Cow position:
               
chr5:51357849-51357491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
105, 20
               

               
Conread position:
               
54-501
               

               
Cow position:
               
chr5:42845946-42845498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 19
               

               
Conread position:
               
57-486
               

               
Cow position:
               
chr5:20783284-20783698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
97, 15
               

               
Conread position:
               
64-264
               

               
Cow position:
               
chr5:11645366-11645579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
88, 9
               

               
Conread position:
               
67-287
               

               
Cow position:
               
chr5:60519841-60520069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
131, 87
               

               
Conread position:
               
67-452
               

               
Cow position:
               
chr5:76311015-76311417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
84, 97
               

               
Conread position:
               
67-504
               

               
Cow position:
               
chr5:26477356-26476920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
35, 149
               

               
Conread position:
               
68-444
               

               
Cow position:
               
chr5:20344836-20345201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 135
               

               
Conread position:
               
68-501
               

               
Cow position:
               
chr5:34183885-34184318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
84, 43
               

               
Conread position:
               
68-503
               

               
Cow position:
               
chr5:45226162-45225720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 198
               

               
Conread position:
               
69-499
               

               
Cow position:
               
chr5:26990066-26990483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
62, 49
               

               
Conread position:
               
73-279
               

               
Cow position:
               
chr5:53825198-53825412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
77, 22
               

               
Conread position:
               
82-287
               

               
Cow position:
               
chr5:15462406-15462616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
128, 79
               

               
Conread position:
               
86-501
               

               
Cow position:
               
chr5:5111392-5110979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 176
               

               
Conread position:
               
87-287
               

               
Cow position:
               
chr5:3491894-3492100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
19, 56
               

               
Conread position:
               
101-287
               

               
Cow position:
               
chr5:19751558-19751751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
96, 48
               

               
Conread position:
               
101-503
               

               
Cow position:
               
chr5:4551832-4552240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
51, 180
               

               
Conread position:
               
114-430
               

               
Cow position:
               
chr5:50950266-50950579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
34, 163
               

               
Conread position:
               
131-502
               

               
Cow position:
               
chr5:17999766-17999400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
21, 125
               

               
Conread position:
               
132-498
               

               
Cow position:
               
chr5:65601194-65601549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
66, 136
               

               
Conread position:
               
133-503
               

               
Cow position:
               
chr5:42063935-42064302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 145
               

               
Conread position:
               
137-436
               

               
Cow position:
               
chr5:2288823-2288518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
17, 156
               

               
Conread position:
               
139-501
               

               
Cow position:
               
chr5:51999961-52000313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
153-463
               

               
Cow position:
               
chr5:32956335-32956036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 100
               

               
Conread position:
               
153-505
               

               
Cow position:
               
chr5:46323057-46322704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
45, 111
               

               
Conread position:
               
155-460
               

               
Cow position:
               
chr5:3004470-3004778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 202
               

               
Conread position:
               
156-464
               

               
Cow position:
               
chr5:58144848-58144544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
23, 101
               

               
Conread position:
               
156-500
               

               
Cow position:
               
chr5:54350603-54350267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
42, 92
               

               
Conread position:
               
157-287
               

               
Cow position:
               
chr5:72903465-72903325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
157-300
               

               
Cow position:
               
chr5:20691700-20691546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
37, 132
               

               
Conread position:
               
157-487
               

               
Cow position:
               
chr5:42744556-42744867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
57, 93
               

               
Conread position:
               
157-503
               

               
Cow position:
               
chr5:28229916-28230261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
160-415
               

               
Cow position:
               
chr5:10254619-10254349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
53, 153
               

               
Conread position:
               
160-501
               

               
Cow position:
               
chr5:49685521-49685176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 107
               

               
Conread position:
               
161-501
               

               
Cow position:
               
chr5:43738185-43737868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
163-494
               

               
Cow position:
               
chr5:75437132-75436798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
35, 96
               

               
Conread position:
               
164-438
               

               
Cow position:
               
chr5:28324111-28324389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 78
               

               
Conread position:
               
165-501
               

               
Cow position:
               
chr5:4032222-4031891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
33, 64
               

               
Conread position:
               
165-503
               

               
Cow position:
               
chr5:29353362-29353028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
26, 116
               

               
Conread position:
               
165-503
               

               
Cow position:
               
chr5:35125783-35126152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
33, 135
               

               
Conread position:
               
165-504
               

               
Cow position:
               
chr5:17063327-17062983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
24, 90
               

               
Conread position:
               
167-459
               

               
Cow position:
               
chr5:12709655-12709943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
27, 109
               

               
Conread position:
               
167-503
               

               
Cow position:
               
chr5:64137020-64137353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
21, 101
               

               
Conread position:
               
169-501
               

               
Cow position:
               
chr5:28926414-28926087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
169-501
               

               
Cow position:
               
chr5:56070624-56070954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 85
               

               
Conread position:
               
169-503
               

               
Cow position:
               
chr5:54086311-54086635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
171-501
               

               
Cow position:
               
chr5:56820487-56820169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
27, 91
               

               
Conread position:
               
173-503
               

               
Cow position:
               
chr5:5257522-5257191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
191-501
               

               
Cow position:
               
chr5:62142467-62142771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
19, 79
               

               
Conread position:
               
193-496
               

               
Cow position:
               
chr5:67540412-67540111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
72, 13
               

               
Conread position:
               
208-503
               

               
Cow position:
               
chr5:7044891-7044608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
201, 40
               

               
Conread position:
               
209-452
               

               
Cow position:
               
chr5:29061104-29060880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
34, 54
               

               
Conread position:
               
209-499
               

               
Cow position:
               
chr5:9390356-9390646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
209-501
               

               
Cow position:
               
chr5:44447066-44446770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 55
               

               
Conread position:
               
209-503
               

               
Cow position:
               
chr5:458302-458585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
212, 57
               

               
Conread position:
               
209-503
               

               
Cow position:
               
chr5:4220801-4221075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
68, 36
               

               
Conread position:
               
209-503
               

               
Cow position:
               
chr5:47323271-47323559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 39
               

               
Conread position:
               
209-503
               

               
Cow position:
               
chr5:57575586-57575870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
213-505
               

               
Cow position:
               
chr5:59115205-59115481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
127, 32
               

               
Conread position:
               
215-443
               

               
Cow position:
               
chr5:17644829-17644616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
28, 39
               

               
Conread position:
               
237-501
               

               
Cow position:
               
chr5:13717747-13717474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
40, 167
               

               
Conread position:
               
252-501
               

               
Cow position:
               
chr5:54375659-54375407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 57
               

               
Conread position:
               
260-505
               

               
Cow position:
               
chr5:63234976-63234730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
29, 69
               

               
Conread position:
               
275-503
               

               
Cow position:
               
chr5:18288997-18289219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 172
               

               
Conread position:
               
287-503
               

               
Cow position:
               
chr5:34192785-34193003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
116, 10
               

               
Conread position:
               
293-505
               

               
Cow position:
               
chr5:64168348-64168140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
126, 11
               

               
Conread position:
               
296-501
               

               
Cow position:
               
chr5:37808781-37808568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
303-464
               

               
Cow position:
               
chr5:30487134-30487301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
71, 95
               

               
Conread position:
               
320-464
               

               
Cow position:
               
chr5:1766438-1766290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
320-473
               

               
Cow position:
               
chr5:29980074-29979914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
9, 75
               

               
Conread position:
               
320-496
               

               
Cow position:
               
chr5:55019209-55019382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
103, 51
               

               
Conread position:
               
320-501
               

               
Cow position:
               
chr5:59873177-59872985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
77, 160
               

               
Conread position:
               
322-483
               

               
Cow position:
               
chr5:21920291-21920457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
80, 144
               

               
Conread position:
               
322-501
               

               
Cow position:
               
chr5:43402816-43403000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
77, 152
               

               
Conread position:
               
323-501
               

               
Cow position:
               
chr5:58446720-58446902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
47, 150
               

               
Conread position:
               
323-501
               

               
Cow position:
               
chr5:63427090-63426910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
84, 76
               

               
Conread position:
               
324-445
               

               
Cow position:
               
chr5:56469906-56469782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
324-448
               

               
Cow position:
               
chr5:7921482-7921361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
324-460
               

               
Cow position:
               
chr5:51801054-51800917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
96, 73
               

               
Conread position:
               
324-468
               

               
Cow position:
               
chr5:21964205-21964352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
324-481
               

               
Cow position:
               
chr5:62985446-62985599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
97, 25
               

               
Conread position:
               
324-487
               

               
Cow position:
               
chr5:25447481-25447645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
96, 75
               

               
Conread position:
               
324-497
               

               
Cow position:
               
chr5:3771766-3771937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
79, 119
               

               
Conread position:
               
324-497
               

               
Cow position:
               
chr5:34300834-34301003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
82, 75
               

               
Conread position:
               
324-498
               

               
Cow position:
               
chr5:47547799-47547631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
324-498
               

               
Cow position:
               
chr5:50575703-50575876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
96, 70
               

               
Conread position:
               
324-498
               

               
Cow position:
               
chr5:57527000-57526832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
82, 98
               

               
Conread position:
               
324-499
               

               
Cow position:
               
chr5:36855123-36855299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
97, 70
               

               
Conread position:
               
324-499
               

               
Cow position:
               
chr5:55955825-55956001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
96, 139
               

               
Conread position:
               
324-500
               

               
Cow position:
               
chr5:18898897-18899069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
97, 13
               

               
Conread position:
               
324-500
               

               
Cow position:
               
chr5:29212862-29213032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
78, 46
               

               
Conread position:
               
324-500
               

               
Cow position:
               
chr5:33552492-33552329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
97, 49
               

               
Conread position:
               
324-500
               

               
Cow position:
               
chr5:54060195-54060370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
78, 55
               

               
Conread position:
               
324-500
               

               
Cow position:
               
chr5:57737028-57737193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
97, 27
               

               
Conread position:
               
324-501
               

               
Cow position:
               
chr5:1165092-1165261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
97, 75
               

               
Conread position:
               
324-501
               

               
Cow position:
               
chr5:14629895-14629715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
67, 146
               

               
Conread position:
               
324-501
               

               
Cow position:
               
chr5:23529362-23529187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
83, 119
               

               
Conread position:
               
324-501
               

               
Cow position:
               
chr5:30949998-30949820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 53
               

               
Conread position:
               
324-501
               

               
Cow position:
               
chr5:32696903-32696728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
97, 28
               

               
Conread position:
               
324-501
               

               
Cow position:
               
chr5:35247191-35247015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
81, 22
               

               
Conread position:
               
324-501
               

               
Cow position:
               
chr5:41293999-41294175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
87, 75
               

               
Conread position:
               
324-501
               

               
Cow position:
               
chr5:49919841-49920019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
95, 75
               

               
Conread position:
               
324-501
               

               
Cow position:
               
chr5:54767991-54767814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
69, 79
               

               
Conread position:
               
324-501
               

               
Cow position:
               
chr5:64758853-64758672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
75, 149
               

               
Conread position:
               
324-502
               

               
Cow position:
               
chr5:4617287-4617462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
97, 25
               

               
Conread position:
               
324-502
               

               
Cow position:
               
chr5:11540129-11539954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
324-502
               

               
Cow position:
               
chr5:23678784-23678606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
75, 144
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chr5:14473495-14473307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
57, 154
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chr5:19523818-19523997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
78, 65
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chr5:32394519-32394696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
96, 49
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chr5:33560815-33560637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
51, 45
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chr5:35459378-35459196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
74, 147
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chr5:44796813-44796636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
87, 55
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chr5:45273582-45273404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
81, 66
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chr5:51053730-51053552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
97, 25
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chr5:51935110-51935286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
97, 74
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chr5:56680167-56680353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
81, 147
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chr5:59325917-59325745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
132, 75
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chr5:65883855-65883675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
83, 46
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chr5:66581883-66582061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
95, 66
               

               
Conread position:
               
324-504
               

               
Cow position:
               
chr5:40039852-40039668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
78, 70
               

               
Conread position:
               
325-499
               

               
Cow position:
               
chr5:26262754-26262586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
81, 9
               

               
Conread position:
               
325-503
               

               
Cow position:
               
chr5:19335865-19335684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
84, 147
               

               
Conread position:
               
325-503
               

               
Cow position:
               
chr5:53946814-53946994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
36, 146
               

               
Conread position:
               
325-505
               

               
Cow position:
               
chr5:36650469-36650652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
69, 91
               

               
Conread position:
               
326-454
               

               
Cow position:
               
chr5:60448136-60448265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
97, 73
               

               
Conread position:
               
326-465
               

               
Cow position:
               
chr5:36250454-36250593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
95, 47
               

               
Conread position:
               
326-501
               

               
Cow position:
               
chr5:43992242-43992419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
80, 145
               

               
Conread position:
               
326-501
               

               
Cow position:
               
chr5:53710770-53710594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
94, 142
               

               
Conread position:
               
326-503
               

               
Cow position:
               
chr5:73168081-73167914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
326-505
               

               
Cow position:
               
chr5:16214604-16214786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
81, 152
               

               
Conread position:
               
327-501
               

               
Cow position:
               
chr5:16206234-16206060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
77, 61
               

               
Conread position:
               
327-501
               

               
Cow position:
               
chr5:19752226-19752397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
61, 46
               

               
Conread position:
               
327-502
               

               
Cow position:
               
chr5:73080122-73080301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 13
               

               
Conread position:
               
328-501
               

               
Cow position:
               
chr5:41165008-41165183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
76, 143
               

               
Conread position:
               
329-503
               

               
Cow position:
               
chr5:57756108-57755938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
68, 113
               

               
Conread position:
               
330-501
               

               
Cow position:
               
chr5:30805092-30805259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
91, 52
               

               
Conread position:
               
331-493
               

               
Cow position:
               
chr5:55928865-55929031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
5, 74
               

               
Conread position:
               
336-501
               

               
Cow position:
               
chr5:67212286-67212456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
58, 144
               

               
Conread position:
               
339-503
               

               
Cow position:
               
chr5:4280381-4280545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
82, 56
               

               
Conread position:
               
340-501
               

               
Cow position:
               
chr5:1461021-1461184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
59, 129
               

               
Conread position:
               
345-501
               

               
Cow position:
               
chr5:45420195-45420042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
76, 54
               

               
Conread position:
               
360-505
               

               
Cow position:
               
chr5:31918599-31918741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
61, 39
               

               
Conread position:
               
364-501
               

               
Cow position:
               
chr5:40237171-40237306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 35
               

               
Conread position:
               
375-503
               

               
Cow position:
               
chr5:38739430-38739306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               
Show alignments to all cow chromosomes.