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Cow genome map

           
Conread name:
           
rpfco0121_d19.y1
        

               
Conread position:
               
1-211
               

               
Cow position:
               
chrX:42221966-42221754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 72
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chrX:42086464-42086715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 72
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chrX:32871184-32870906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 70
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chrX:22115679-22115397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 26
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chrX:21665989-21665688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 70
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chrX:38227488-38227189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 70
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chrX:13177858-13177557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
40, 12
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chrX:17497698-17497993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 72
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chrX:28847280-28846974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 78
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chrX:29049577-29049872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 71
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chrX:34564902-34565191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 72
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chrX:38967253-38967555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 72
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chrX:42470335-42470033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 72
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chrX:26441178-26440869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 72
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chrX:2524133-2523809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
43, 79
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chrX:38439078-38439515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 45
               

               
Conread position:
               
1-439
               

               
Cow position:
               
chrX:11581539-11581968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 72
               

               
Conread position:
               
1-444
               

               
Cow position:
               
chrX:47379865-47379427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 70
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chrX:5017804-5017360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 72
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chrX:35680946-35681393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 62
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chrX:42462146-42461692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 72
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chrX:42994216-42994670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 70
               

               
Conread position:
               
1-463
               

               
Cow position:
               
chrX:45043160-45043633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
146, 70
               

               
Conread position:
               
1-492
               

               
Cow position:
               
chrX:24288311-24287846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
420, 74
               

               
Conread position:
               
1-497
               

               
Cow position:
               
chrX:14599138-14599625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 70
               

               
Conread position:
               
1-498
               

               
Cow position:
               
chrX:42171697-42171201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 279
               

               
Conread position:
               
1-499
               

               
Cow position:
               
chrX:20340287-20339798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 45
               

               
Conread position:
               
1-499
               

               
Cow position:
               
chrX:41192291-41192798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 73
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chrX:917774-917272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chrX:1616455-1615947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 78
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chrX:4044256-4043771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 74
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chrX:8796853-8797345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 71
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chrX:9252569-9252067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 15
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chrX:11655679-11656177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 73
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chrX:13648182-13647689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 72
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chrX:26626087-26625575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 276
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chrX:27446293-27446782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 72
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chrX:30543685-30543188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 15
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chrX:38094923-38094424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 72
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chrX:40481269-40480776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 72
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chrX:3654211-3654705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 37
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chrX:4633255-4632759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 78
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chrX:12309784-12309288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 26
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chrX:13868299-13868800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 72
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chrX:15007549-15007051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 72
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chrX:15147579-15147099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 51
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chrX:18695324-18694833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 77
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chrX:21592888-21593379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 72
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chrX:23564195-23563693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 45
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chrX:28133951-28134436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 70
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chrX:31489114-31489618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 72
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chrX:34441845-34441356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 70
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chrX:41879328-41878836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 70
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chrX:43730588-43730126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 26
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chrX:44054406-44054900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 71
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chrX:44192840-44192346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 53
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chrX:46532918-46532397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 73
               

               
Conread position:
               
1-504
               

               
Cow position:
               
chrX:151505-152000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 22
               

               
Conread position:
               
2-275
               

               
Cow position:
               
chrX:161031-161313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 71
               

               
Conread position:
               
2-497
               

               
Cow position:
               
chrX:35223905-35224388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 71
               

               
Conread position:
               
3-501
               

               
Cow position:
               
chrX:17794599-17795077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 69
               

               
Conread position:
               
3-505
               

               
Cow position:
               
chrX:24424788-24424301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 70
               

               
Conread position:
               
5-287
               

               
Cow position:
               
chrX:12437629-12437344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 68
               

               
Conread position:
               
5-409
               

               
Cow position:
               
chrX:35609592-35609993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 68
               

               
Conread position:
               
5-503
               

               
Cow position:
               
chrX:27705200-27705684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 13
               

               
Conread position:
               
5-503
               

               
Cow position:
               
chrX:40827139-40826653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 22
               

               
Conread position:
               
7-264
               

               
Cow position:
               
chrX:41304136-41303864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 71
               

               
Conread position:
               
7-287
               

               
Cow position:
               
chrX:7695372-7695656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 65
               

               
Conread position:
               
7-500
               

               
Cow position:
               
chrX:5871921-5872414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 66
               

               
Conread position:
               
8-500
               

               
Cow position:
               
chrX:34401607-34402095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 65
               

               
Conread position:
               
8-503
               

               
Cow position:
               
chrX:42247566-42247084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 36
               

               
Conread position:
               
9-501
               

               
Cow position:
               
chrX:38218328-38218810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 64
               

               
Conread position:
               
9-503
               

               
Cow position:
               
chrX:1055783-1055283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 64
               

               
Conread position:
               
14-286
               

               
Cow position:
               
chrX:34192296-34192580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 59
               

               
Conread position:
               
15-503
               

               
Cow position:
               
chrX:41790821-41790331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 58
               

               
Conread position:
               
16-289
               

               
Cow position:
               
chrX:31373195-31373475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 57
               

               
Conread position:
               
16-451
               

               
Cow position:
               
chrX:41198703-41199155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
122, 58
               

               
Conread position:
               
16-464
               

               
Cow position:
               
chrX:7718469-7718909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
20-503
               

               
Cow position:
               
chrX:25035765-25035284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 53
               

               
Conread position:
               
25-261
               

               
Cow position:
               
chrX:5640993-5640760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
170, 46
               

               
Conread position:
               
26-505
               

               
Cow position:
               
chrX:31250019-31250488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 47
               

               
Conread position:
               
35-501
               

               
Cow position:
               
chrX:1514790-1514323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
26, 9
               

               
Conread position:
               
36-287
               

               
Cow position:
               
chrX:25283503-25283242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 37
               

               
Conread position:
               
36-500
               

               
Cow position:
               
chrX:34502560-34503015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 37
               

               
Conread position:
               
39-501
               

               
Cow position:
               
chrX:11718138-11717687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 34
               

               
Conread position:
               
41-503
               

               
Cow position:
               
chrX:19689857-19690313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 32
               

               
Conread position:
               
48-503
               

               
Cow position:
               
chrX:46771323-46770865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 23
               

               
Conread position:
               
49-503
               

               
Cow position:
               
chrX:45089086-45089544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
9, 23
               

               
Conread position:
               
52-259
               

               
Cow position:
               
chrX:31436133-31436355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
100, 21
               

               
Conread position:
               
52-501
               

               
Cow position:
               
chrX:44396673-44397105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
142, 19
               

               
Conread position:
               
53-419
               

               
Cow position:
               
chrX:32747312-32747696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 20
               

               
Conread position:
               
55-503
               

               
Cow position:
               
chrX:47481456-47481894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
97, 17
               

               
Conread position:
               
57-501
               

               
Cow position:
               
chrX:40558018-40557583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 16
               

               
Conread position:
               
61-505
               

               
Cow position:
               
chrX:43527164-43527608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 219
               

               
Conread position:
               
63-478
               

               
Cow position:
               
chrX:6234771-6234376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
65-501
               

               
Cow position:
               
chrX:33639630-33640071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 55
               

               
Conread position:
               
67-501
               

               
Cow position:
               
chrX:10412319-10411890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 188
               

               
Conread position:
               
69-444
               

               
Cow position:
               
chrX:14924669-14925040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 207
               

               
Conread position:
               
71-501
               

               
Cow position:
               
chrX:42855082-42855554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 334
               

               
Conread position:
               
75-490
               

               
Cow position:
               
chrX:5638493-5638084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 185
               

               
Conread position:
               
75-503
               

               
Cow position:
               
chrX:33466292-33466722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
79, 257
               

               
Conread position:
               
80-287
               

               
Cow position:
               
chrX:34990721-34990943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
83-241
               

               
Cow position:
               
chrX:616720-616552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
84-501
               

               
Cow position:
               
chrX:8925389-8925795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
13, 154
               

               
Conread position:
               
86-464
               

               
Cow position:
               
chrX:19188622-19188991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 173
               

               
Conread position:
               
88-503
               

               
Cow position:
               
chrX:7350990-7351395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 172
               

               
Conread position:
               
98-495
               

               
Cow position:
               
chrX:30133626-30133227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 155
               

               
Conread position:
               
102-287
               

               
Cow position:
               
chrX:19015144-19015346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
102-505
               

               
Cow position:
               
chrX:41238661-41238255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 228
               

               
Conread position:
               
107-456
               

               
Cow position:
               
chrX:25237885-25238232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
45, 68
               

               
Conread position:
               
110-503
               

               
Cow position:
               
chrX:4269357-4268966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
37, 32
               

               
Conread position:
               
117-295
               

               
Cow position:
               
chrX:37836306-37836504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
119-456
               

               
Cow position:
               
chrX:42874697-42875035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 138
               

               
Conread position:
               
119-501
               

               
Cow position:
               
chrX:16762491-16762867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 132
               

               
Conread position:
               
119-503
               

               
Cow position:
               
chrX:2467599-2467982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
33, 46
               

               
Conread position:
               
120-438
               

               
Cow position:
               
chrX:9997611-9997300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
25, 153
               

               
Conread position:
               
120-503
               

               
Cow position:
               
chrX:8730799-8731191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
34, 147
               

               
Conread position:
               
122-264
               

               
Cow position:
               
chrX:35413352-35413510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
123-464
               

               
Cow position:
               
chrX:12017998-12018352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 158
               

               
Conread position:
               
125-287
               

               
Cow position:
               
chrX:34270141-34270309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
85, 57
               

               
Conread position:
               
127-445
               

               
Cow position:
               
chrX:40647705-40648027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 158
               

               
Conread position:
               
133-500
               

               
Cow position:
               
chrX:17725711-17726070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
19, 140
               

               
Conread position:
               
139-501
               

               
Cow position:
               
chrX:27680148-27680494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
54, 17
               

               
Conread position:
               
140-289
               

               
Cow position:
               
chrX:20752007-20752164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
75, 21
               

               
Conread position:
               
141-505
               

               
Cow position:
               
chrX:20151591-20151956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
146-499
               

               
Cow position:
               
chrX:24366080-24365727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
49, 115
               

               
Conread position:
               
147-429
               

               
Cow position:
               
chrX:23497913-23497642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
46, 67
               

               
Conread position:
               
150-503
               

               
Cow position:
               
chrX:6278753-6278400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
38, 109
               

               
Conread position:
               
156-467
               

               
Cow position:
               
chrX:39938758-39938460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
57, 32
               

               
Conread position:
               
156-497
               

               
Cow position:
               
chrX:34663080-34662754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
57, 39
               

               
Conread position:
               
156-503
               

               
Cow position:
               
chrX:9416934-9416586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
40, 102
               

               
Conread position:
               
157-471
               

               
Cow position:
               
chrX:11455292-11454975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
32, 94
               

               
Conread position:
               
157-488
               

               
Cow position:
               
chrX:16416268-16416592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
45, 100
               

               
Conread position:
               
157-501
               

               
Cow position:
               
chrX:23514258-23513921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 123
               

               
Conread position:
               
157-501
               

               
Cow position:
               
chrX:27394254-27393930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
264, 40
               

               
Conread position:
               
157-501
               

               
Cow position:
               
chrX:37119359-37119689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
40, 79
               

               
Conread position:
               
157-503
               

               
Cow position:
               
chrX:44961507-44961849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
32, 107
               

               
Conread position:
               
157-505
               

               
Cow position:
               
chrX:21672311-21672660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
37, 98
               

               
Conread position:
               
158-501
               

               
Cow position:
               
chrX:45598843-45598509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
38, 106
               

               
Conread position:
               
160-503
               

               
Cow position:
               
chrX:38549211-38549545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
38, 103
               

               
Conread position:
               
161-465
               

               
Cow position:
               
chrX:41167200-41166901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
30, 115
               

               
Conread position:
               
161-484
               

               
Cow position:
               
chrX:11589828-11589509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
33, 120
               

               
Conread position:
               
161-503
               

               
Cow position:
               
chrX:42492746-42492425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
50, 27
               

               
Conread position:
               
161-505
               

               
Cow position:
               
chrX:17662833-17662498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 98
               

               
Conread position:
               
163-501
               

               
Cow position:
               
chrX:13382090-13382420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 117
               

               
Conread position:
               
163-503
               

               
Cow position:
               
chrX:30963106-30962779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
33, 114
               

               
Conread position:
               
163-503
               

               
Cow position:
               
chrX:48010360-48010702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 92
               

               
Conread position:
               
165-501
               

               
Cow position:
               
chrX:39558580-39558253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
24, 100
               

               
Conread position:
               
165-503
               

               
Cow position:
               
chrX:36975717-36976049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
26, 99
               

               
Conread position:
               
165-505
               

               
Cow position:
               
chrX:9201315-9201648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
24, 110
               

               
Conread position:
               
166-503
               

               
Cow position:
               
chrX:5900226-5900560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
23, 141
               

               
Conread position:
               
167-437
               

               
Cow position:
               
chrX:37048811-37048548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
23, 90
               

               
Conread position:
               
167-501
               

               
Cow position:
               
chrX:7721754-7722084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
175-500
               

               
Cow position:
               
chrX:46073044-46072720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
177-501
               

               
Cow position:
               
chrX:29602053-29601732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 87
               

               
Conread position:
               
177-503
               

               
Cow position:
               
chrX:36283125-36283438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 78
               

               
Conread position:
               
180-501
               

               
Cow position:
               
chrX:37781330-37781013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
30, 18
               

               
Conread position:
               
185-501
               

               
Cow position:
               
chrX:1499461-1499761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
25, 83
               

               
Conread position:
               
185-503
               

               
Cow position:
               
chrX:32420010-32420310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 88
               

               
Conread position:
               
188-501
               

               
Cow position:
               
chrX:10831702-10831391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
25, 63
               

               
Conread position:
               
190-503
               

               
Cow position:
               
chrX:36060954-36061258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
20, 8
               

               
Conread position:
               
204-464
               

               
Cow position:
               
chrX:36961452-36961701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
217, 41
               

               
Conread position:
               
204-503
               

               
Cow position:
               
chrX:11633495-11633780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
39, 63
               

               
Conread position:
               
209-498
               

               
Cow position:
               
chrX:40809508-40809786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
209-501
               

               
Cow position:
               
chrX:4515489-4515786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
52, 24
               

               
Conread position:
               
209-504
               

               
Cow position:
               
chrX:45098933-45099227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
44, 57
               

               
Conread position:
               
209-505
               

               
Cow position:
               
chrX:32820851-32821128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
34, 7
               

               
Conread position:
               
215-502
               

               
Cow position:
               
chrX:46433310-46433588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
152, 34
               

               
Conread position:
               
233-505
               

               
Cow position:
               
chrX:6260300-6260049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
172, 8
               

               
Conread position:
               
249-501
               

               
Cow position:
               
chrX:7710695-7710443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
27, 75
               

               
Conread position:
               
277-503
               

               
Cow position:
               
chrX:27228000-27228224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
46, 27
               

               
Conread position:
               
277-503
               

               
Cow position:
               
chrX:27946182-27945956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
122, 27
               

               
Conread position:
               
284-502
               

               
Cow position:
               
chrX:36355994-36356203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 39
               

               
Conread position:
               
289-503
               

               
Cow position:
               
chrX:161298-161510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
23, 6
               

               
Conread position:
               
316-501
               

               
Cow position:
               
chrX:39219992-39220175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
73, 9
               

               
Conread position:
               
319-501
               

               
Cow position:
               
chrX:42235614-42235428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
77, 160
               

               
Conread position:
               
322-496
               

               
Cow position:
               
chrX:31252335-31252499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
99, 77
               

               
Conread position:
               
322-501
               

               
Cow position:
               
chrX:878460-878284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
82, 25
               

               
Conread position:
               
322-501
               

               
Cow position:
               
chrX:7571820-7572001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
76, 147
               

               
Conread position:
               
322-501
               

               
Cow position:
               
chrX:8869487-8869306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
76, 149
               

               
Conread position:
               
322-501
               

               
Cow position:
               
chrX:34411759-34411942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
76, 151
               

               
Conread position:
               
322-503
               

               
Cow position:
               
chrX:10516173-10516351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
81, 27
               

               
Conread position:
               
322-503
               

               
Cow position:
               
chrX:29194151-29194327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
99, 32
               

               
Conread position:
               
322-505
               

               
Cow position:
               
chrX:43567839-43568019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
99, 69
               

               
Conread position:
               
323-503
               

               
Cow position:
               
chrX:11318049-11317870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 94
               

               
Conread position:
               
324-438
               

               
Cow position:
               
chrX:17908367-17908254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
97, 29
               

               
Conread position:
               
324-448
               

               
Cow position:
               
chrX:25283095-25282972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
97, 75
               

               
Conread position:
               
324-459
               

               
Cow position:
               
chrX:28845750-28845888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
324-463
               

               
Cow position:
               
chrX:41992123-41991986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
97, 57
               

               
Conread position:
               
324-467
               

               
Cow position:
               
chrX:35848481-35848627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
324-468
               

               
Cow position:
               
chrX:20790840-20790977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
97, 74
               

               
Conread position:
               
324-468
               

               
Cow position:
               
chrX:38654511-38654366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
81, 10
               

               
Conread position:
               
324-486
               

               
Cow position:
               
chrX:19003219-19003374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
97, 75
               

               
Conread position:
               
324-490
               

               
Cow position:
               
chrX:4992093-4991928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
92, 28
               

               
Conread position:
               
324-493
               

               
Cow position:
               
chrX:6559526-6559360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
96, 66
               

               
Conread position:
               
324-496
               

               
Cow position:
               
chrX:6265680-6265508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
47, 55
               

               
Conread position:
               
324-497
               

               
Cow position:
               
chrX:29120965-29121139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
83, 75
               

               
Conread position:
               
324-497
               

               
Cow position:
               
chrX:48044594-48044423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
97, 81
               

               
Conread position:
               
324-498
               

               
Cow position:
               
chrX:22387323-22387157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
97, 75
               

               
Conread position:
               
324-499
               

               
Cow position:
               
chrX:42873313-42873476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
97, 48
               

               
Conread position:
               
324-500
               

               
Cow position:
               
chrX:5679646-5679477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
97, 48
               

               
Conread position:
               
324-501
               

               
Cow position:
               
chrX:11085137-11084968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
97, 55
               

               
Conread position:
               
324-501
               

               
Cow position:
               
chrX:11614619-11614789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
97, 75
               

               
Conread position:
               
324-501
               

               
Cow position:
               
chrX:16348649-16348475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
73, 142
               

               
Conread position:
               
324-501
               

               
Cow position:
               
chrX:19162421-19162245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
66, 102
               

               
Conread position:
               
324-501
               

               
Cow position:
               
chrX:31515088-31515270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
62, 42
               

               
Conread position:
               
324-501
               

               
Cow position:
               
chrX:35413539-35413706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
324-501
               

               
Cow position:
               
chrX:41068640-41068821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
88, 70
               

               
Conread position:
               
324-502
               

               
Cow position:
               
chrX:6407468-6407640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
79, 17
               

               
Conread position:
               
324-502
               

               
Cow position:
               
chrX:29549628-29549452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
79, 145
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chrX:4296900-4296727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chrX:6690336-6690162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
97, 22
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chrX:12095854-12095674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
95, 64
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chrX:17949568-17949395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
99, 71
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chrX:20882018-20881847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
97, 42
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chrX:21327825-21328011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
73, 152
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chrX:27261107-27261290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
18, 26
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chrX:27685167-27685347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
97, 75
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chrX:28878250-28878076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
63, 76
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chrX:35590838-35590658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
86, 66
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chrX:38728657-38728832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chrX:40680530-40680712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
79, 148
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chrX:41027075-41027257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
74, 148
               

               
Conread position:
               
324-503
               

               
Cow position:
               
chrX:45875312-45875490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
96, 77
               

               
Conread position:
               
324-505
               

               
Cow position:
               
chrX:15815006-15815183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
84, 28
               

               
Conread position:
               
324-505
               

               
Cow position:
               
chrX:46587739-46587922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
79, 145
               

               
Conread position:
               
325-493
               

               
Cow position:
               
chrX:12405463-12405293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
71, 152
               

               
Conread position:
               
325-500
               

               
Cow position:
               
chrX:39126252-39126421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
96, 47
               

               
Conread position:
               
325-501
               

               
Cow position:
               
chrX:21566323-21566503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
18, 148
               

               
Conread position:
               
325-501
               

               
Cow position:
               
chrX:36514974-36514796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
325-501
               

               
Cow position:
               
chrX:43779926-43779751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
64, 95
               

               
Conread position:
               
325-501
               

               
Cow position:
               
chrX:45993143-45993326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
57, 78
               

               
Conread position:
               
326-486
               

               
Cow position:
               
chrX:22465863-22466037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 156
               

               
Conread position:
               
326-498
               

               
Cow position:
               
chrX:33000824-33000998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
97, 151
               

               
Conread position:
               
326-500
               

               
Cow position:
               
chrX:6488498-6488671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
34, 70
               

               
Conread position:
               
326-501
               

               
Cow position:
               
chrX:45113540-45113715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
95, 73
               

               
Conread position:
               
326-503
               

               
Cow position:
               
chrX:23562556-23562730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
95, 41
               

               
Conread position:
               
326-503
               

               
Cow position:
               
chrX:36866092-36866271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
75, 143
               

               
Conread position:
               
326-505
               

               
Cow position:
               
chrX:20168479-20168658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
95, 78
               

               
Conread position:
               
327-491
               

               
Cow position:
               
chrX:9365753-9365590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
96, 55
               

               
Conread position:
               
327-498
               

               
Cow position:
               
chrX:35885805-35885634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
82, 54
               

               
Conread position:
               
327-499
               

               
Cow position:
               
chrX:34222636-34222810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
70, 144
               

               
Conread position:
               
327-503
               

               
Cow position:
               
chrX:29680338-29680163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
96, 72
               

               
Conread position:
               
328-501
               

               
Cow position:
               
chrX:3130498-3130668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
93, 41
               

               
Conread position:
               
328-501
               

               
Cow position:
               
chrX:34565204-34565380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 79
               

               
Conread position:
               
328-503
               

               
Cow position:
               
chrX:8917320-8917492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
91, 60
               

               
Conread position:
               
329-496
               

               
Cow position:
               
chrX:31729366-31729533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
91, 61
               

               
Conread position:
               
330-499
               

               
Cow position:
               
chrX:126694-126861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
67, 114
               

               
Conread position:
               
330-503
               

               
Cow position:
               
chrX:44873634-44873463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 134
               

               
Conread position:
               
331-503
               

               
Cow position:
               
chrX:27509097-27508926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
89, 137
               

               
Conread position:
               
333-503
               

               
Cow position:
               
chrX:31294635-31294474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
88, 66
               

               
Conread position:
               
333-505
               

               
Cow position:
               
chrX:25036915-25037087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
88, 70
               

               
Conread position:
               
334-501
               

               
Cow position:
               
chrX:32978148-32977989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
86, 64
               

               
Conread position:
               
334-503
               

               
Cow position:
               
chrX:27511356-27511526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
44, 61
               

               
Conread position:
               
335-502
               

               
Cow position:
               
chrX:10959467-10959298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
52, 136
               

               
Conread position:
               
336-468
               

               
Cow position:
               
chrX:17301378-17301242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
336-501
               

               
Cow position:
               
chrX:32623498-32623667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
61, 143
               

               
Conread position:
               
339-501
               

               
Cow position:
               
chrX:41111655-41111812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
82, 51
               

               
Conread position:
               
339-503
               

               
Cow position:
               
chrX:15820531-15820692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
82, 62
               

               
Conread position:
               
340-503
               

               
Cow position:
               
chrX:44703137-44702968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 62
               

               
Conread position:
               
342-493
               

               
Cow position:
               
chrX:43973481-43973633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
64, 57
               

               
Conread position:
               
343-501
               

               
Cow position:
               
chrX:23561799-23561954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
78, 56
               

               
Conread position:
               
344-501
               

               
Cow position:
               
chrX:18964885-18964733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
67, 21
               

               
Conread position:
               
346-503
               

               
Cow position:
               
chrX:4279176-4279020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
75, 47
               

               
Conread position:
               
349-501
               

               
Cow position:
               
chrX:31627037-31626882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
48, 127
               

               
Conread position:
               
353-503
               

               
Cow position:
               
chrX:44339376-44339227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
43, 109
               

               
Conread position:
               
355-504
               

               
Cow position:
               
chrX:29115661-29115804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
68, 38
               

               
Conread position:
               
358-501
               

               
Cow position:
               
chrX:19943284-19943140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
47, 114
               

               
Conread position:
               
363-503
               

               
Cow position:
               
chrX:35268822-35268959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
12, 100
               

               
Conread position:
               
374-503
               

               
Cow position:
               
chrX:17956664-17956788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 25
               
Show alignments to all cow chromosomes.