Cow genome map

Conread name: rpfco0123_l11.y1

Conread position: 1-287
Cow position: chr11:2286018-2285716 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr11:4596872-4596570 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr11:4734588-4734286 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr11:10871520-10871822 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr11:15047762-15047462 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 13, 56

Conread position: 1-287
Cow position: chr11:17549463-17549161 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr11:20285313-20285615 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr11:22617641-22617943 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr11:24333688-24333990 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr11:24397093-24397395 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr11:30088181-30087879 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 10, 230

Conread position: 1-287
Cow position: chr11:30777268-30776966 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr11:30929687-30929385 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr11:32455359-32455057 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 212
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr11:33189876-33189574 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr11:41260624-41260925 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 13, 81

Conread position: 1-287
Cow position: chr11:46142684-46142983 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 13, 63

Conread position: 1-287
Cow position: chr11:47573231-47573533 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 221
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 13, 181

Conread position: 1-287
Cow position: chr11:50282105-50282407 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 13, 233

Conread position: 1-287
Cow position: chr11:51034581-51034279 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr11:54302842-54302540 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr11:57624882-57625187 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 218
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 14, 233

Conread position: 1-287
Cow position: chr11:58137021-58136720 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 213
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 13, 73

Conread position: 1-287
Cow position: chr11:65760302-65760603 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 217
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr11:67453958-67453658 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 13, 219

Conread position: 1-287
Cow position: chr11:72369356-72369057 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 203
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 13, 227

Conread position: 1-287
Cow position: chr11:75256495-75256193 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 13, 230

Conread position: 1-288
Cow position: chr11:75710948-75711251 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 220
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr11:6343764-6343458 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 226
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr11:15988602-15988287 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 224
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 13, 239

Conread position: 1-291
Cow position: chr11:17104401-17104703 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 218
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 13, 176

Conread position: 1-291
Cow position: chr11:20730918-20731223 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 226
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 13, 147

Conread position: 1-291
Cow position: chr11:26121618-26121921 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 217
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 13, 79

Conread position: 1-291
Cow position: chr11:26592472-26592778 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 226
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 13, 225

Conread position: 1-291
Cow position: chr11:35142030-35142333 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 218
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 13, 77

Conread position: 1-291
Cow position: chr11:41093561-41093863 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 226
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 20, 62

Conread position: 1-291
Cow position: chr11:52846780-52846474 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 13, 230

Conread position: 1-295
Cow position: chr11:51289858-51289554 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 212
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 10, 63

Conread position: 1-296
Cow position: chr11:43917739-43917428 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 224
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 13, 231

Conread position: 1-296
Cow position: chr11:59872110-59871809 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 60

Conread position: 1-297
Cow position: chr11:52297860-52298170 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 223

Conread position: 1-297
Cow position: chr11:58399624-58399325 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 221
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 11, 48

Conread position: 1-297
Cow position: chr11:67920037-67920346 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 227
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 13, 226

Conread position: 1-297
Cow position: chr11:75510895-75511195 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 233
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 11, 73

Conread position: 1-315
Cow position: chr11:66664115-66664445 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 238
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 13, 210

Conread position: 2-287
Cow position: chr11:2800956-2801256 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 217
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 12, 228

Conread position: 2-291
Cow position: chr11:21852940-21853252 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 230
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 10, 231

Conread position: 2-291
Cow position: chr11:31836488-31836183 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 225
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 12, 224

Conread position: 5-297
Cow position: chr11:15995807-15995486 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 226
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 34, 231

Conread position: 6-287
Cow position: chr11:61131656-61131950 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 5, 222

Conread position: 6-291
Cow position: chr11:63860347-63860644 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 218
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 5, 222

Conread position: 6-297
Cow position: chr11:49935455-49935755 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 213

Conread position: 9-291
Cow position: chr11:84967398-84967107 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 211
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 107, 215

Conread position: 9-297
Cow position: chr11:12762905-12763187 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 216
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 22, 54

Conread position: 9-297
Cow position: chr11:30057492-30057199 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 191

Conread position: 12-287
Cow position: chr11:17854381-17854097 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 203
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 104, 212

Conread position: 12-287
Cow position: chr11:28125800-28125518 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 104, 212

Conread position: 12-290
Cow position: chr11:30255728-30255437 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 209
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 19, 215

Conread position: 12-296
Cow position: chr11:4206468-4206168 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 216

Conread position: 12-297
Cow position: chr11:44233696-44233416 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 221
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 180, 74

Conread position: 15-287
Cow position: chr11:7152280-7152003 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 208
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 107, 96

Conread position: 15-287
Cow position: chr11:8366844-8366563 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 101, 209

Conread position: 15-287
Cow position: chr11:10698462-10698743 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 202
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 101, 209

Conread position: 15-291
Cow position: chr11:3238586-3238300 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 207
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 101, 215

Conread position: 15-291
Cow position: chr11:15495672-15495387 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 205
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 101, 209

Conread position: 15-297
Cow position: chr11:14469785-14469502 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 195

Conread position: 15-297
Cow position: chr11:73513085-73513379 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 84

Conread position: 15-297
Cow position: chr11:84774450-84774158 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 100

Conread position: 16-297
Cow position: chr11:53280113-53280407 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 206

Conread position: 26-287
Cow position: chr11:24045488-24045757 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 195
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 90, 31

Conread position: 26-291
Cow position: chr11:3796487-3796234 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 197
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 173, 91

Conread position: 26-291
Cow position: chr11:9388609-9388336 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 90, 71

Conread position: 26-291
Cow position: chr11:9432648-9432378 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 205
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 78, 150

Conread position: 26-291
Cow position: chr11:19060801-19061075 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 198
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 90, 198

Conread position: 26-291
Cow position: chr11:63390209-63390483 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 199
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 90, 198

Conread position: 26-291
Cow position: chr11:74990894-74990619 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 36, 199

Conread position: 26-294
Cow position: chr11:42793664-42793938 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 152

Conread position: 26-295
Cow position: chr11:21728746-21729025 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 122

Conread position: 29-291
Cow position: chr11:14649971-14650237 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 208
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 86, 16

Conread position: 29-297
Cow position: chr11:10365132-10365403 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 207
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 82, 137

Conread position: 31-297
Cow position: chr11:3230589-3230313 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 189

Conread position: 37-290
Cow position: chr11:25760004-25759743 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 191
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 79, 186

Conread position: 37-291
Cow position: chr11:31833999-31834262 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 191
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 79, 187

Conread position: 37-297
Cow position: chr11:32762713-32762445 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 196
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 79, 104

Conread position: 53-287
Cow position: chr11:24493562-24493805 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 177
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 63, 171

Conread position: 112-296
Cow position: chr11:18146357-18146556 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 62, 120

Show alignments to all cow chromosomes.