Cow genome map
| Conread name: | rpfco0123_l11.y1 |
| Conread position: | 1-287 |
| Cow position: | chr12:1055921-1056222 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 13, 229 |
| Conread position: | 1-287 |
| Cow position: | chr12:2229159-2228857 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr12:3364475-3364173 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 13, 118 |
| Conread position: | 1-287 |
| Cow position: | chr12:7674490-7674188 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr12:10790658-10790960 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 13, 231 |
| Conread position: | 1-287 |
| Cow position: | chr12:14214649-14214347 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 221 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr12:14423945-14423636 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 13, 118 |
| Conread position: | 1-287 |
| Cow position: | chr12:21452389-21452691 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr12:21665726-21665422 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 13, 232 |
| Conread position: | 1-287 |
| Cow position: | chr12:25838872-25838569 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 13, 231 |
| Conread position: | 1-287 |
| Cow position: | chr12:27957937-27958239 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr12:31027232-31027534 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr12:32758284-32757983 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 13, 158 |
| Conread position: | 1-287 |
| Cow position: | chr12:35163371-35163064 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 13, 235 |
| Conread position: | 1-291 |
| Cow position: | chr12:5226818-5226516 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 13, 128 |
| Conread position: | 1-291 |
| Cow position: | chr12:8172493-8172190 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 13, 231 |
| Conread position: | 1-291 |
| Cow position: | chr12:12928322-12928628 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-291 |
| Cow position: | chr12:17787053-17787359 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-291 |
| Cow position: | chr12:25265745-25266051 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-291 |
| Cow position: | chr12:26869667-26869974 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 243 |
| Conread position: | 1-291 |
| Cow position: | chr12:27994687-27994383 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 229 |
| Conread position: | 1-291 |
| Cow position: | chr12:28012643-28012949 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-291 |
| Cow position: | chr12:30016490-30016788 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 13, 85 |
| Conread position: | 1-291 |
| Cow position: | chr12:31328742-31329047 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 52 |
| Conread position: | 1-291 |
| Cow position: | chr12:37562588-37562287 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 13, 40 |
| Conread position: | 1-291 |
| Cow position: | chr12:38893951-38893646 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 13, 52 |
| Conread position: | 1-292 |
| Cow position: | chr12:17718884-17718582 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 10, 155 |
| Conread position: | 1-296 |
| Cow position: | chr12:15231615-15231312 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 148 |
| Conread position: | 1-296 |
| Cow position: | chr12:20994167-20994489 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 13, 193 |
| Conread position: | 1-297 |
| Cow position: | chr12:5713550-5713240 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 108 |
| Conread position: | 6-287 |
| Cow position: | chr12:36445965-36445673 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 5, 95 |
| Conread position: | 9-291 |
| Cow position: | chr12:10359267-10358978 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 107, 48 |
| Conread position: | 12-291 |
| Cow position: | chr12:22748786-22748498 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 210 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 104, 212 |
| Conread position: | 15-287 |
| Cow position: | chr12:8839821-8839540 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 101, 209 |
| Conread position: | 15-287 |
| Cow position: | chr12:16301771-16302052 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 101, 209 |
| Conread position: | 15-287 |
| Cow position: | chr12:34177122-34176841 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 205 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 101, 204 |
| Conread position: | 15-291 |
| Cow position: | chr12:25148051-25148336 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 101, 209 |
| Conread position: | 26-287 |
| Cow position: | chr12:5110511-5110778 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 90, 31 |
| Conread position: | 26-287 |
| Cow position: | chr12:22979337-22979607 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 90, 198 |
| Conread position: | 26-291 |
| Cow position: | chr12:1406003-1405731 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 90, 204 |
| Conread position: | 26-291 |
| Cow position: | chr12:43681560-43681287 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 75 |
| Conread position: | 26-293 |
| Cow position: | chr12:13042684-13042961 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 72, 199 |
| Conread position: | 26-297 |
| Cow position: | chr12:8841499-8841782 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 202 |
| Conread position: | 37-287 |
| Cow position: | chr12:5107603-5107344 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 79, 187 |
| Conread position: | 37-287 |
| Cow position: | chr12:32147084-32147343 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 79, 187 |
| Conread position: | 37-291 |
| Cow position: | chr12:32657091-32656831 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 79, 20 |
| Conread position: | 37-291 |
| Cow position: | chr12:46111572-46111835 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 79, 182 |
| Conread position: | 40-291 |
| Cow position: | chr12:21557489-21557229 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 72, 190 |
| Conread position: | 44-287 |
| Cow position: | chr12:21075358-21075122 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 148, 44 |
| Conread position: | 59-287 |
| Cow position: | chr12:259253-259016 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 57, 165 |
| Conread position: | 105-297 |
| Cow position: | chr12:3094146-3094347 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 87, 119 |
Show alignments to all cow chromosomes.