Cow genome map

Conread name: rpfco0123_l11.y1

Conread position: 1-286
Cow position: chr15:26388715-26389015 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 217
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 10, 219

Conread position: 1-287
Cow position: chr15:678315-678013 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr15:1774698-1774398 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 210
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 13, 138

Conread position: 1-287
Cow position: chr15:2015724-2015423 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 207
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 13, 218

Conread position: 1-287
Cow position: chr15:2533985-2533683 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr15:2590650-2590355 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 219
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 13, 165

Conread position: 1-287
Cow position: chr15:2644094-2644394 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 13, 210

Conread position: 1-287
Cow position: chr15:4821817-4822119 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 212
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr15:6758223-6758525 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr15:7267855-7267553 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr15:7847554-7847848 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 212
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 14, 228

Conread position: 1-287
Cow position: chr15:11596128-11596430 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 10, 230

Conread position: 1-287
Cow position: chr15:16784574-16784278 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 214
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr15:20944626-20944323 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 219
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 13, 231

Conread position: 1-287
Cow position: chr15:23666240-23666542 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr15:25069240-25069542 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 213
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr15:41029065-41029367 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr15:44576652-44576350 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr15:45211266-45210964 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr15:49307047-49306747 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 13, 151

Conread position: 1-287
Cow position: chr15:50142513-50142211 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr15:50308218-50308523 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 214
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 13, 233

Conread position: 1-291
Cow position: chr15:7566254-7565951 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 219
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 13, 91

Conread position: 1-291
Cow position: chr15:7586533-7586838 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 214
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 13, 142

Conread position: 1-291
Cow position: chr15:17773095-17773401 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 222
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr15:21532886-21533189 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 214
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 18, 0

Conread position: 1-291
Cow position: chr15:25164850-25165156 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr15:31768297-31768602 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 13, 109

Conread position: 1-291
Cow position: chr15:32065039-32065341 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 227
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 13, 116

Conread position: 1-291
Cow position: chr15:36329206-36329512 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 219
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr15:36940129-36940435 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 216
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr15:41793076-41793382 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 231

Conread position: 1-295
Cow position: chr15:2800685-2800987 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 224
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 10, 60

Conread position: 1-295
Cow position: chr15:33228804-33229109 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 224
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 11, 117

Conread position: 1-296
Cow position: chr15:18019134-18019444 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 231
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 11, 70

Conread position: 1-297
Cow position: chr15:5640337-5640649 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 229
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 13, 230

Conread position: 1-297
Cow position: chr15:10736817-10736508 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 79

Conread position: 1-297
Cow position: chr15:36423362-36423674 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 225

Conread position: 6-287
Cow position: chr15:22539594-22539887 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 215
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 5, 221

Conread position: 6-296
Cow position: chr15:51910291-51910593 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 213
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 96, 195

Conread position: 7-291
Cow position: chr15:4629000-4629298 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 210
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 88, 222

Conread position: 12-287
Cow position: chr15:45944462-45944744 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 199
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 104, 45

Conread position: 12-292
Cow position: chr15:36671396-36671121 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 200
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 20, 94

Conread position: 12-297
Cow position: chr15:17236656-17236932 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 204
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 105, 59

Conread position: 13-291
Cow position: chr15:4218681-4218966 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 207
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 19, 65

Conread position: 15-287
Cow position: chr15:7512123-7512404 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 199
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 101, 209

Conread position: 15-287
Cow position: chr15:12442761-12442477 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 206
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 16, 201

Conread position: 15-290
Cow position: chr15:34140753-34141034 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 99

Conread position: 15-291
Cow position: chr15:29076-29360 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 210
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 172, 154

Conread position: 15-291
Cow position: chr15:4769736-4769452 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 177, 214

Conread position: 15-291
Cow position: chr15:5020595-5020309 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 205
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 101, 209

Conread position: 15-291
Cow position: chr15:5498287-5498005 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 101, 209

Conread position: 15-291
Cow position: chr15:6163871-6164156 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 101, 204

Conread position: 15-291
Cow position: chr15:6489000-6488716 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 206
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 106, 82

Conread position: 15-291
Cow position: chr15:20404450-20404735 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 101, 209

Conread position: 15-291
Cow position: chr15:21637505-21637220 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 202
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 101, 209

Conread position: 15-291
Cow position: chr15:21807082-21806797 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 205
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 101, 209

Conread position: 15-291
Cow position: chr15:34064177-34063902 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 202
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 45

Conread position: 15-291
Cow position: chr15:50151932-50151647 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 101, 209

Conread position: 15-298
Cow position: chr15:32714932-32714642 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 206
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 101, 82

Conread position: 20-291
Cow position: chr15:7578392-7578109 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 11, 168

Conread position: 26-287
Cow position: chr15:7985205-7985475 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 193
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 90, 198

Conread position: 26-287
Cow position: chr15:11574798-11575063 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 198
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 166, 84

Conread position: 26-287
Cow position: chr15:33335686-33335416 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 195
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 90, 198

Conread position: 26-291
Cow position: chr15:442568-442841 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 197
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 163, 197

Conread position: 26-291
Cow position: chr15:9909880-9910154 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 194
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 90, 199

Conread position: 26-291
Cow position: chr15:22759778-22760056 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 204
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 95, 202

Conread position: 29-297
Cow position: chr15:30811840-30811567 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 48

Conread position: 29-297
Cow position: chr15:35405191-35404913 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 29-297
Cow position: chr15:44164829-44164552 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 194
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 82, 68

Conread position: 37-287
Cow position: chr15:20647375-20647116 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 190
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 79, 187

Conread position: 37-287
Cow position: chr15:21152610-21152869 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 191
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 79, 187

Conread position: 37-291
Cow position: chr15:4713118-4712855 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 187
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 79, 193

Conread position: 37-291
Cow position: chr15:8576360-8576097 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 189
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 79, 187

Conread position: 37-291
Cow position: chr15:28486932-28487181 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 189
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 60, 76

Conread position: 37-297
Cow position: chr15:24043966-24043717 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 196
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 78, 104

Conread position: 40-297
Cow position: chr15:1785974-1785707 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 196
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 76, 184

Conread position: 45-287
Cow position: chr15:17267719-17267466 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 182
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 54, 181

Conread position: 49-291
Cow position: chr15:4933584-4933333 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 185
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 72, 63

Conread position: 50-297
Cow position: chr15:39091008-39091256 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 181
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 45, 164

Conread position: 56-300
Cow position: chr15:30984768-30984508 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 200
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 55, 84

Conread position: 60-287
Cow position: chr15:33753094-33753330 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 172
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 56, 164

Conread position: 63-287
Cow position: chr15:12948-13181 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 168
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 53, 161

Conread position: 78-295
Cow position: chr15:29811573-29811801 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 178
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 38, 143

Conread position: 84-297
Cow position: chr15:23774458-23774244 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 108, 40

Conread position: 90-297
Cow position: chr15:36355914-36356127 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 102, 20

Conread position: 112-297
Cow position: chr15:51632241-51632057 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 118

Show alignments to all cow chromosomes.