Cow genome map

Conread name: rpfco0123_l11.y1

Conread position: 1-287
Cow position: chr16:7385671-7385369 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr16:12485394-12485696 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr16:12651826-12651532 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 215
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 13, 166

Conread position: 1-287
Cow position: chr16:18975774-18975472 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 225

Conread position: 1-287
Cow position: chr16:19081952-19081656 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 217
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 13, 190

Conread position: 1-287
Cow position: chr16:23772769-23773071 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 225

Conread position: 1-287
Cow position: chr16:24987597-24987900 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 219
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 13, 231

Conread position: 1-287
Cow position: chr16:25075499-25075197 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr16:25880222-25879920 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr16:26658871-26658569 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr16:27592918-27593218 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 185

Conread position: 1-287
Cow position: chr16:40879498-40879196 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr16:42211402-42211100 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr16:45465014-45465313 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 13, 166

Conread position: 1-287
Cow position: chr16:49096870-49096568 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 222
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr16:702158-701861 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 208
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 14, 53

Conread position: 1-291
Cow position: chr16:4756916-4756623 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 211
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 13, 181

Conread position: 1-291
Cow position: chr16:5525194-5525499 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 218
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 229

Conread position: 1-291
Cow position: chr16:8481708-8482020 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 227
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 11, 236

Conread position: 1-291
Cow position: chr16:14100754-14100452 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 220
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 13, 169

Conread position: 1-291
Cow position: chr16:20278746-20278440 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 223
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr16:22320383-22320689 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 231

Conread position: 1-291
Cow position: chr16:24209492-24209798 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr16:32118483-32118179 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 216
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 13, 56

Conread position: 1-291
Cow position: chr16:46555328-46555022 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 223
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 13, 231

Conread position: 1-295
Cow position: chr16:31425960-31425654 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 221

Conread position: 1-297
Cow position: chr16:17142305-17141997 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 230
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 11, 84

Conread position: 1-297
Cow position: chr16:39616121-39615816 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 232
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 11, 112

Conread position: 6-287
Cow position: chr16:2960577-2960283 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 5, 222

Conread position: 6-291
Cow position: chr16:4343020-4343306 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 205
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 5, 79

Conread position: 6-297
Cow position: chr16:49142175-49142479 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 54

Conread position: 6-378
Cow position: chr16:19778040-19778424 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 224
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 25, 156

Conread position: 13-291
Cow position: chr16:9786201-9785915 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 209
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 18, 69

Conread position: 13-297
Cow position: chr16:47017878-47018156 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 212
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 19, 64

Conread position: 14-291
Cow position: chr16:28193415-28193700 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 208
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 102, 210

Conread position: 15-287
Cow position: chr16:6677602-6677325 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 198
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 101, 58

Conread position: 15-287
Cow position: chr16:18212310-18212591 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 206
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 101, 209

Conread position: 15-287
Cow position: chr16:24636632-24636910 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 197
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 177, 70

Conread position: 15-287
Cow position: chr16:26627637-26627356 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 208
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 106, 97

Conread position: 15-291
Cow position: chr16:5665984-5665701 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 101, 80

Conread position: 15-291
Cow position: chr16:14040310-14040025 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 101, 209

Conread position: 15-291
Cow position: chr16:18650699-18650984 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 206
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 101, 209

Conread position: 15-291
Cow position: chr16:19062720-19062436 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 203
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 101, 203

Conread position: 15-293
Cow position: chr16:26990056-26990342 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 207
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 101, 64

Conread position: 15-293
Cow position: chr16:28267833-28268118 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 24

Conread position: 15-297
Cow position: chr16:7504321-7504033 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 159

Conread position: 15-298
Cow position: chr16:22798819-22799111 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 101, 209

Conread position: 26-291
Cow position: chr16:23403687-23403414 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 203
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 90, 137

Conread position: 26-291
Cow position: chr16:41034174-41033899 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 198
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 90, 199

Conread position: 26-297
Cow position: chr16:47773138-47772858 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 193

Conread position: 37-291
Cow position: chr16:2224069-2224349 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 203
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 66, 139

Conread position: 37-295
Cow position: chr16:23065862-23065605 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 191
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 155, 47

Conread position: 44-297
Cow position: chr16:5833660-5833392 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 191
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 72, 106

Conread position: 50-291
Cow position: chr16:37387952-37388198 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 182
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 66, 120

Conread position: 50-297
Cow position: chr16:237327-237075 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 196
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 61, 169

Conread position: 74-291
Cow position: chr16:7155425-7155204 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 42, 23

Conread position: 75-287
Cow position: chr16:47247897-47247676 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 41, 149

Conread position: 78-296
Cow position: chr16:53612623-53612397 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 168
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 43, 23

Conread position: 83-297
Cow position: chr16:45754818-45755028 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 162
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 187, 14

Conread position: 116-297
Cow position: chr16:42751926-42751745 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 26, 53

Show alignments to all cow chromosomes.