Cow genome map
| Conread name: | rpfco0123_l11.y1 |
| Conread position: | 1-209 |
| Cow position: | chr21:40454406-40454626 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1-287 |
| Cow position: | chr21:4719052-4719354 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr21:11144082-11144384 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr21:16575679-16575981 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr21:16890076-16890374 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 13, 116 |
| Conread position: | 1-287 |
| Cow position: | chr21:23329575-23329877 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr21:26756955-26757257 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr21:30298247-30297945 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr21:30850630-30850328 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr21:31950181-31949882 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 13, 227 |
| Conread position: | 1-287 |
| Cow position: | chr21:32238107-32237805 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr21:32773703-32773401 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr21:34899906-34900208 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr21:36892464-36892766 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr21:38865844-38866146 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr21:48273430-48273731 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 13, 103 |
| Conread position: | 1-291 |
| Cow position: | chr21:43469-43164 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 91 |
| Conread position: | 1-291 |
| Cow position: | chr21:1058239-1057924 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 232 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 11, 242 |
| Conread position: | 1-291 |
| Cow position: | chr21:2293416-2293720 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 11, 63 |
| Conread position: | 1-291 |
| Cow position: | chr21:3766000-3766308 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 226 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 11, 227 |
| Conread position: | 1-291 |
| Cow position: | chr21:3782540-3782235 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 13, 210 |
| Conread position: | 1-291 |
| Cow position: | chr21:4732776-4733070 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 13, 127 |
| Conread position: | 1-291 |
| Cow position: | chr21:5009701-5010008 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 13, 166 |
| Conread position: | 1-291 |
| Cow position: | chr21:5642069-5642377 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 13, 118 |
| Conread position: | 1-291 |
| Cow position: | chr21:7047417-7047720 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 13, 63 |
| Conread position: | 1-291 |
| Cow position: | chr21:23341419-23341113 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-291 |
| Cow position: | chr21:27287742-27287438 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 11, 165 |
| Conread position: | 1-291 |
| Cow position: | chr21:27619752-27620040 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 13, 118 |
| Conread position: | 1-291 |
| Cow position: | chr21:30595323-30595628 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 92 |
| Conread position: | 1-291 |
| Cow position: | chr21:30627318-30627617 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 23 |
| Conread position: | 1-291 |
| Cow position: | chr21:31252766-31252449 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 10, 243 |
| Conread position: | 1-291 |
| Cow position: | chr21:33709732-33710038 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-291 |
| Cow position: | chr21:33964964-33965257 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 13, 155 |
| Conread position: | 1-291 |
| Cow position: | chr21:36376748-36376452 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 252 |
| Conread position: | 1-291 |
| Cow position: | chr21:36506071-36506376 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-291 |
| Cow position: | chr21:37923944-37923638 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-291 |
| Cow position: | chr21:42917561-42917255 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-294 |
| Cow position: | chr21:20243835-20244141 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 13, 63 |
| Conread position: | 1-296 |
| Cow position: | chr21:28989051-28988749 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 225 |
| Conread position: | 1-297 |
| Cow position: | chr21:9863175-9863482 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 27, 147 |
| Conread position: | 1-297 |
| Cow position: | chr21:16768355-16768667 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 224 |
| Conread position: | 1-297 |
| Cow position: | chr21:22463957-22463647 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 57 |
| Conread position: | 1-297 |
| Cow position: | chr21:28908373-28908683 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 172 |
| Conread position: | 1-297 |
| Cow position: | chr21:33983505-33983819 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 227 |
| Conread position: | 1-297 |
| Cow position: | chr21:37298909-37298596 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 171 |
| Conread position: | 1-297 |
| Cow position: | chr21:48234552-48234860 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 11, 102 |
| Conread position: | 1-297 |
| Cow position: | chr21:48262577-48262272 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 30, 118 |
| Conread position: | 2-291 |
| Cow position: | chr21:13300576-13300286 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 65 |
| Conread position: | 2-297 |
| Cow position: | chr21:48196205-48195907 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 247 |
| Conread position: | 6-291 |
| Cow position: | chr21:19626950-19627246 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 5, 183 |
| Conread position: | 9-291 |
| Cow position: | chr21:32534571-32534283 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 12, 103 |
| Conread position: | 11-296 |
| Cow position: | chr21:7156128-7155843 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 88, 60 |
| Conread position: | 12-291 |
| Cow position: | chr21:2928125-2928412 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 85 |
| Conread position: | 12-297 |
| Cow position: | chr21:22855647-22855362 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 206 |
| Conread position: | 15-287 |
| Cow position: | chr21:18574261-18573989 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 177, 97 |
| Conread position: | 15-287 |
| Cow position: | chr21:26628517-26628234 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 15, 91 |
| Conread position: | 15-287 |
| Cow position: | chr21:27147805-27148086 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 101, 209 |
| Conread position: | 15-287 |
| Cow position: | chr21:47168710-47168426 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 16, 212 |
| Conread position: | 15-291 |
| Cow position: | chr21:30966196-30966481 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 101, 209 |
| Conread position: | 15-291 |
| Cow position: | chr21:48530918-48530626 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 15-293 |
| Cow position: | chr21:47429089-47428802 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 101, 70 |
| Conread position: | 15-296 |
| Cow position: | chr21:33832226-33832524 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 15-297 |
| Cow position: | chr21:4791860-4791572 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 102, 154 |
| Conread position: | 15-297 |
| Cow position: | chr21:31276087-31275799 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 76 |
| Conread position: | 18-291 |
| Cow position: | chr21:25190402-25190113 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 213 |
| Conread position: | 26-287 |
| Cow position: | chr21:11509675-11509407 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 90, 37 |
| Conread position: | 26-287 |
| Cow position: | chr21:19351125-19351395 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 90, 198 |
| Conread position: | 26-287 |
| Cow position: | chr21:25598400-25598139 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 90, 133 |
| Conread position: | 26-296 |
| Cow position: | chr21:46830829-46831108 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 88, 193 |
| Conread position: | 36-297 |
| Cow position: | chr21:47532459-47532190 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 114 |
| Conread position: | 37-291 |
| Cow position: | chr21:6965747-6966010 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 79, 187 |
| Conread position: | 37-291 |
| Cow position: | chr21:13735437-13735699 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 86, 176 |
| Conread position: | 37-296 |
| Cow position: | chr21:47360449-47360714 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 201 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 82, 41 |
| Conread position: | 37-297 |
| Cow position: | chr21:39700710-39700977 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 79, 58 |
| Conread position: | 41-291 |
| Cow position: | chr21:32396310-32396564 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 75, 111 |
| Conread position: | 45-291 |
| Cow position: | chr21:4098288-4098036 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 147, 53 |
| Conread position: | 50-291 |
| Cow position: | chr21:23585804-23585554 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 69, 175 |
| Conread position: | 79-297 |
| Cow position: | chr21:23448927-23448705 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 112, 27 |
| Conread position: | 134-297 |
| Cow position: | chr21:18846709-18846879 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 58, 90 |
Show alignments to all cow chromosomes.