Cow genome map

Conread name: rpfco0123_l11.y1

Conread position: 1-286
Cow position: chr22:33093932-33093632 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 224

Conread position: 1-287
Cow position: chr22:102517-102215 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr22:3488741-3489043 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr22:9285147-9285449 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr22:10550461-10550159 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 212
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr22:11127681-11127384 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 13, 79

Conread position: 1-287
Cow position: chr22:11231703-11232000 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 13, 79

Conread position: 1-287
Cow position: chr22:13242997-13243299 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr22:13552951-13552649 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr22:15013098-15013396 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 215
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr22:20569447-20569749 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 222
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr22:22663483-22663785 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr22:28996714-28997016 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr22:32944043-32943741 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr22:33378948-33379250 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr22:39902976-39902674 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr22:44099473-44099775 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 7, 230

Conread position: 1-287
Cow position: chr22:45281536-45281242 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 212
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 13, 56

Conread position: 1-290
Cow position: chr22:22107637-22107333 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 222
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 13, 179

Conread position: 1-291
Cow position: chr22:981917-981611 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 222
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr22:11754058-11754355 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 208
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 13, 206

Conread position: 1-291
Cow position: chr22:17324908-17325213 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 226
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 13, 117

Conread position: 1-291
Cow position: chr22:21192619-21192913 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 220
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 13, 168

Conread position: 1-291
Cow position: chr22:25336746-25336440 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr22:29855445-29855138 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 226
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 13, 231

Conread position: 1-291
Cow position: chr22:33951366-33951670 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 228
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 13, 87

Conread position: 1-291
Cow position: chr22:35667885-35668188 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 218
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 13, 85

Conread position: 1-291
Cow position: chr22:39473002-39473323 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 231
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 11, 126

Conread position: 1-291
Cow position: chr22:40373977-40373678 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 216

Conread position: 1-291
Cow position: chr22:41845977-41846280 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 222

Conread position: 1-291
Cow position: chr22:44365615-44365921 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 218
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 230

Conread position: 1-296
Cow position: chr22:15497584-15497279 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 225
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 11, 62

Conread position: 1-296
Cow position: chr22:32951825-32951513 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 62

Conread position: 1-296
Cow position: chr22:33200866-33200564 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 220
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 10, 118

Conread position: 1-296
Cow position: chr22:36503113-36503417 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 164

Conread position: 1-297
Cow position: chr22:865136-865444 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 191

Conread position: 1-297
Cow position: chr22:10161326-10161011 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 202

Conread position: 1-297
Cow position: chr22:13017413-13017717 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 111

Conread position: 1-297
Cow position: chr22:14509932-14510234 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 229
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 13, 79

Conread position: 1-297
Cow position: chr22:17834233-17834546 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 222

Conread position: 1-297
Cow position: chr22:26167205-26167513 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 205

Conread position: 1-297
Cow position: chr22:32811617-32811928 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 217
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 13, 53

Conread position: 1-297
Cow position: chr22:35755098-35755409 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 82

Conread position: 1-297
Cow position: chr22:36571943-36572257 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 227

Conread position: 3-296
Cow position: chr22:46578117-46578420 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 226
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 11, 113

Conread position: 4-293
Cow position: chr22:46033809-46033513 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 223
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 8, 46

Conread position: 6-287
Cow position: chr22:40828480-40828775 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 210
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 5, 222

Conread position: 9-287
Cow position: chr22:28130319-28130046 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 205
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 22, 65

Conread position: 12-287
Cow position: chr22:20236997-20237281 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 104, 212

Conread position: 12-297
Cow position: chr22:26338885-26338599 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 215
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 10, 62

Conread position: 13-291
Cow position: chr22:12868870-12869161 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 212
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 78, 217

Conread position: 15-286
Cow position: chr22:15942158-15942435 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 189
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 102, 60

Conread position: 15-291
Cow position: chr22:14807828-14807543 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 101, 209

Conread position: 15-291
Cow position: chr22:15173912-15173630 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 199
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 101, 74

Conread position: 15-291
Cow position: chr22:19169000-19168714 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 16, 59

Conread position: 15-291
Cow position: chr22:21593000-21592712 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 213
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 16, 213

Conread position: 15-291
Cow position: chr22:27306390-27306675 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 203
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 101, 209

Conread position: 15-291
Cow position: chr22:30675163-30675438 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 203
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 177, 97

Conread position: 15-291
Cow position: chr22:45013410-45013684 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 200
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 101, 42

Conread position: 15-292
Cow position: chr22:47927226-47926939 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 210
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 15, 216

Conread position: 15-297
Cow position: chr22:10314201-10313910 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 16, 154

Conread position: 15-297
Cow position: chr22:32894481-32894191 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 82

Conread position: 21-290
Cow position: chr22:47957708-47957975 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 202
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 171, 36

Conread position: 26-287
Cow position: chr22:26089673-26089943 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 199
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 96, 86

Conread position: 26-291
Cow position: chr22:30963453-30963190 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 207
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 166, 75

Conread position: 26-291
Cow position: chr22:35909923-35910199 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 202
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 90, 26

Conread position: 26-296
Cow position: chr22:41470065-41470346 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 186
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 88, 72

Conread position: 26-296
Cow position: chr22:41971992-41972256 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 158

Conread position: 26-297
Cow position: chr22:697495-697215 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 203
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 90, 198

Conread position: 29-285
Cow position: chr22:31306799-31306526 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 192
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 68, 200

Conread position: 36-297
Cow position: chr22:29955650-29955908 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 202
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 15, 83

Conread position: 37-287
Cow position: chr22:44382277-44382018 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 186
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 79, 187

Conread position: 37-291
Cow position: chr22:3274805-3275068 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 195
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 79, 182

Conread position: 37-291
Cow position: chr22:15174520-15174783 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 195
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 79, 187

Conread position: 39-297
Cow position: chr22:12624993-12625276 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 61, 191

Conread position: 40-295
Cow position: chr22:44515386-44515649 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 182
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 155, 178

Conread position: 40-297
Cow position: chr22:38439827-38440087 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 33

Conread position: 47-290
Cow position: chr22:8299682-8299436 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 51, 203

Conread position: 50-291
Cow position: chr22:13721202-13721442 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 191
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 67, 116

Conread position: 68-297
Cow position: chr22:11371382-11371615 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 162
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 91, 44

Conread position: 78-296
Cow position: chr22:40386139-40385928 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 174, 34

Conread position: 84-297
Cow position: chr22:43789230-43789010 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 170
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 108, 28

Conread position: 85-297
Cow position: chr22:6722071-6722287 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 168
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 107, 27

Conread position: 86-295
Cow position: chr22:21935371-21935584 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 106, 24

Conread position: 103-298
Cow position: chr22:17853667-17853870 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 38, 14

Conread position: 104-293
Cow position: chr22:47462716-47462523 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 12, 6

Show alignments to all cow chromosomes.