Cow genome map
| Conread name: | rpfco0123_l11.y1 |
| Conread position: | 1-207 |
| Cow position: | chr24:38885156-38885361 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 109, 56 |
| Conread position: | 1-287 |
| Cow position: | chr24:207320-207617 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 13, 225 |
| Conread position: | 1-287 |
| Cow position: | chr24:1841190-1841493 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 13, 231 |
| Conread position: | 1-287 |
| Cow position: | chr24:10035363-10035665 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr24:11207926-11208228 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr24:12696443-12696744 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 14, 66 |
| Conread position: | 1-287 |
| Cow position: | chr24:14353026-14352731 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 74 |
| Conread position: | 1-287 |
| Cow position: | chr24:18740688-18740990 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr24:25372783-25372482 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 13, 118 |
| Conread position: | 1-287 |
| Cow position: | chr24:26412727-26412426 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 224 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 13, 107 |
| Conread position: | 1-287 |
| Cow position: | chr24:28601361-28601647 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 1-287 |
| Cow position: | chr24:30681452-30681754 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr24:36308257-36307959 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 13, 169 |
| Conread position: | 1-287 |
| Cow position: | chr24:40428013-40428315 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-291 |
| Cow position: | chr24:5929459-5929154 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 103 |
| Conread position: | 1-291 |
| Cow position: | chr24:6020398-6020703 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 13, 118 |
| Conread position: | 1-291 |
| Cow position: | chr24:6443117-6442813 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 13, 92 |
| Conread position: | 1-291 |
| Cow position: | chr24:7749302-7749001 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 13, 182 |
| Conread position: | 1-291 |
| Cow position: | chr24:15793337-15793642 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 13, 127 |
| Conread position: | 1-291 |
| Cow position: | chr24:17161297-17161603 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 226 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-291 |
| Cow position: | chr24:17309744-17310054 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 11, 156 |
| Conread position: | 1-291 |
| Cow position: | chr24:36027834-36028140 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 225 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 13, 231 |
| Conread position: | 1-291 |
| Cow position: | chr24:36779941-36779646 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 13, 118 |
| Conread position: | 1-297 |
| Cow position: | chr24:5990507-5990819 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 13, 229 |
| Conread position: | 1-297 |
| Cow position: | chr24:17368253-17368553 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 125 |
| Conread position: | 1-297 |
| Cow position: | chr24:29064288-29064600 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 225 |
| Conread position: | 1-297 |
| Cow position: | chr24:29180042-29179735 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 218 |
| Conread position: | 12-287 |
| Cow position: | chr24:38296719-38296435 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 104, 212 |
| Conread position: | 15-287 |
| Cow position: | chr24:3163130-3162849 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 101, 209 |
| Conread position: | 15-287 |
| Cow position: | chr24:9901031-9900750 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 101, 209 |
| Conread position: | 15-287 |
| Cow position: | chr24:40552279-40552004 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 101, 209 |
| Conread position: | 15-287 |
| Cow position: | chr24:42944020-42944286 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 100, 33 |
| Conread position: | 15-291 |
| Cow position: | chr24:3794142-3793857 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 209 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 101, 209 |
| Conread position: | 15-291 |
| Cow position: | chr24:6035517-6035806 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 213 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 16, 214 |
| Conread position: | 15-291 |
| Cow position: | chr24:14760559-14760268 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 62, 221 |
| Conread position: | 15-291 |
| Cow position: | chr24:20604408-20604124 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 101, 53 |
| Conread position: | 15-291 |
| Cow position: | chr24:22047413-22047694 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 209 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 101, 42 |
| Conread position: | 15-291 |
| Cow position: | chr24:29190943-29190658 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 101, 210 |
| Conread position: | 15-291 |
| Cow position: | chr24:33639838-33640123 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 208 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 107, 97 |
| Conread position: | 15-291 |
| Cow position: | chr24:39067208-39067493 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 101, 209 |
| Conread position: | 15-291 |
| Cow position: | chr24:41671528-41671233 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 17, 53 |
| Conread position: | 26-287 |
| Cow position: | chr24:6325723-6325994 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 90, 198 |
| Conread position: | 26-287 |
| Cow position: | chr24:13492139-13491875 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 90, 199 |
| Conread position: | 26-289 |
| Cow position: | chr24:22954211-22953939 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 90, 198 |
| Conread position: | 26-291 |
| Cow position: | chr24:13191809-13191537 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 90, 198 |
| Conread position: | 26-291 |
| Cow position: | chr24:26388260-26388518 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 90, 176 |
| Conread position: | 26-291 |
| Cow position: | chr24:41006120-41005852 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 31, 108 |
| Conread position: | 26-294 |
| Cow position: | chr24:36036182-36036455 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 84, 186 |
| Conread position: | 26-296 |
| Cow position: | chr24:32853861-32853582 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 199 |
| Conread position: | 26-297 |
| Cow position: | chr24:28497486-28497766 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 49, 90 |
| Conread position: | 30-296 |
| Cow position: | chr24:30893236-30893498 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 166, 80 |
| Conread position: | 37-287 |
| Cow position: | chr24:17188635-17188895 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 188 |
| Conread position: | 37-287 |
| Cow position: | chr24:40272480-40272226 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 79, 60 |
| Conread position: | 37-291 |
| Cow position: | chr24:3851233-3850970 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 79, 188 |
| Conread position: | 37-296 |
| Cow position: | chr24:25677343-25677081 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 155, 11 |
| Conread position: | 37-297 |
| Cow position: | chr24:6415800-6415532 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 201 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 79, 182 |
| Conread position: | 39-296 |
| Cow position: | chr24:33122554-33122296 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 153, 57 |
| Conread position: | 40-291 |
| Cow position: | chr24:40518978-40519228 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 76, 120 |
| Conread position: | 42-297 |
| Cow position: | chr24:27762878-27762612 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 76 |
| Conread position: | 60-294 |
| Cow position: | chr24:12991386-12991153 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 190, 52 |
| Conread position: | 68-297 |
| Cow position: | chr24:43634720-43634479 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 53, 159 |
| Conread position: | 81-291 |
| Cow position: | chr24:6524591-6524372 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 81-296 |
| Cow position: | chr24:15372363-15372145 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 34, 29 |
Show alignments to all cow chromosomes.