Cow genome map
| Conread name: | rpfco0123_l11.y1 |
| Conread position: | 1-287 |
| Cow position: | chr28:482075-482375 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 13, 229 |
| Conread position: | 1-287 |
| Cow position: | chr28:6478853-6478551 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr28:7059865-7059563 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr28:7888450-7888752 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr28:7906912-7907213 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 13, 229 |
| Conread position: | 1-287 |
| Cow position: | chr28:9710519-9710821 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr28:10870724-10870423 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr28:12701502-12701200 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr28:15054791-15054489 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr28:24993122-24992820 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr28:30249761-30249459 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-287 |
| Cow position: | chr28:32589334-32589032 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-289 |
| Cow position: | chr28:1198830-1198526 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-291 |
| Cow position: | chr28:1943661-1943967 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 10, 230 |
| Conread position: | 1-291 |
| Cow position: | chr28:6319516-6319818 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 223 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 13, 229 |
| Conread position: | 1-291 |
| Cow position: | chr28:6473634-6473927 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 191, 13 |
| Conread position: | 1-291 |
| Cow position: | chr28:9182504-9182198 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-291 |
| Cow position: | chr28:10303472-10303167 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 13, 229 |
| Conread position: | 1-291 |
| Cow position: | chr28:14666766-14666474 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 1-291 |
| Cow position: | chr28:16597782-16597476 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 1-291 |
| Cow position: | chr28:21363151-21362837 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 11, 239 |
| Conread position: | 1-291 |
| Cow position: | chr28:21896916-21896611 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 13, 158 |
| Conread position: | 1-291 |
| Cow position: | chr28:28471652-28471353 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 7, 63 |
| Conread position: | 1-291 |
| Cow position: | chr28:29222651-29222956 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 13, 138 |
| Conread position: | 1-296 |
| Cow position: | chr28:6959866-6959553 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 13, 232 |
| Conread position: | 1-296 |
| Cow position: | chr28:7981328-7981635 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 179 |
| Conread position: | 1-296 |
| Cow position: | chr28:24499678-24499378 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 10, 16 |
| Conread position: | 1-297 |
| Cow position: | chr28:958494-958183 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 11, 196 |
| Conread position: | 1-297 |
| Cow position: | chr28:3001231-3001536 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 1-297 |
| Cow position: | chr28:8786944-8786639 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 107 |
| Conread position: | 1-297 |
| Cow position: | chr28:12429839-12429528 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 63 |
| Conread position: | 1-297 |
| Cow position: | chr28:14234371-14234080 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 221 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 11, 103 |
| Conread position: | 1-297 |
| Cow position: | chr28:17686004-17686318 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 71 |
| Conread position: | 1-297 |
| Cow position: | chr28:23675423-23675136 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 10, 31 |
| Conread position: | 6-295 |
| Cow position: | chr28:10642921-10643201 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 186, 212 |
| Conread position: | 9-293 |
| Cow position: | chr28:24997288-24997587 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 67 |
| Conread position: | 12-292 |
| Cow position: | chr28:4214508-4214218 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 92, 207 |
| Conread position: | 12-295 |
| Cow position: | chr28:25826496-25826794 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 102, 44 |
| Conread position: | 12-297 |
| Cow position: | chr28:20967052-20967346 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 104, 212 |
| Conread position: | 15-287 |
| Cow position: | chr28:3653210-3652935 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 177, 61 |
| Conread position: | 15-287 |
| Cow position: | chr28:6535183-6535465 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 107, 210 |
| Conread position: | 15-287 |
| Cow position: | chr28:9287779-9288060 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 101, 209 |
| Conread position: | 15-287 |
| Cow position: | chr28:25850175-25849894 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 17, 43 |
| Conread position: | 15-291 |
| Cow position: | chr28:5637664-5637379 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 101, 209 |
| Conread position: | 15-291 |
| Cow position: | chr28:23309722-23310007 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 209 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 101, 209 |
| Conread position: | 15-297 |
| Cow position: | chr28:4069560-4069277 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 91 |
| Conread position: | 15-297 |
| Cow position: | chr28:34677597-34677874 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 93 |
| Conread position: | 18-291 |
| Cow position: | chr28:20964261-20964546 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 214 |
| Conread position: | 20-297 |
| Cow position: | chr28:14512043-14511751 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 11, 40 |
| Conread position: | 26-287 |
| Cow position: | chr28:5336202-5336472 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 90, 198 |
| Conread position: | 26-287 |
| Cow position: | chr28:30031942-30031675 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 166, 37 |
| Conread position: | 26-291 |
| Cow position: | chr28:6776401-6776674 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 166, 197 |
| Conread position: | 26-291 |
| Cow position: | chr28:23615756-23615473 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 83, 21 |
| Conread position: | 26-291 |
| Cow position: | chr28:28357182-28357455 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 90, 49 |
| Conread position: | 26-297 |
| Cow position: | chr28:3745553-3745286 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 166, 31 |
| Conread position: | 26-297 |
| Cow position: | chr28:19194121-19193842 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 205 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 166, 197 |
| Conread position: | 37-291 |
| Cow position: | chr28:7336578-7336312 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 60, 191 |
| Conread position: | 37-291 |
| Cow position: | chr28:7830150-7829886 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 79, 187 |
| Conread position: | 38-291 |
| Cow position: | chr28:15916935-15917198 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 60, 182 |
| Conread position: | 38-297 |
| Cow position: | chr28:15497900-15498150 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 154, 37 |
| Conread position: | 52-296 |
| Cow position: | chr28:15677214-15676959 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 60, 34 |
| Conread position: | 55-287 |
| Cow position: | chr28:13323707-13323466 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 61, 169 |
| Conread position: | 55-291 |
| Cow position: | chr28:444982-444737 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 61, 169 |
| Conread position: | 64-287 |
| Cow position: | chr28:10194040-10194272 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 52, 166 |
| Conread position: | 68-287 |
| Cow position: | chr28:24588685-24588913 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 48, 156 |
| Conread position: | 98-291 |
| Cow position: | chr28:7784693-7784893 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 25, 14 |
Show alignments to all cow chromosomes.