Cow genome map

Conread name: rpfco0123_l11.y1

Conread position: 1-287
Cow position: chr4:4850666-4850364 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr4:7779724-7779423 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 62

Conread position: 1-287
Cow position: chr4:8700463-8700162 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 213
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 169

Conread position: 1-287
Cow position: chr4:9357563-9357261 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr4:10403390-10403692 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr4:15618019-15617717 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr4:17821855-17821553 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr4:18005039-18004737 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr4:18331411-18331109 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr4:21342398-21342096 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr4:24140200-24139896 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 225
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 13, 232

Conread position: 1-287
Cow position: chr4:30474705-30474402 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 216
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 13, 231

Conread position: 1-287
Cow position: chr4:38564369-38564671 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr4:40218163-40217861 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 217
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 13, 118

Conread position: 1-287
Cow position: chr4:47264102-47263800 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 222
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr4:60579805-60580107 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr4:62906697-62906999 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr4:62962038-62962337 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 13, 63

Conread position: 1-287
Cow position: chr4:63195258-63195556 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 217
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 14, 212

Conread position: 1-287
Cow position: chr4:64156053-64155751 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr4:65198476-65198778 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr4:533615-533309 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr4:1007217-1006912 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr4:5882800-5882494 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 217
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr4:10122731-10122425 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 14, 230

Conread position: 1-291
Cow position: chr4:17033176-17033482 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 13, 231

Conread position: 1-291
Cow position: chr4:20616393-20616699 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 226
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr4:26745831-26745537 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 222
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 11, 118

Conread position: 1-291
Cow position: chr4:35144220-35144526 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr4:42480554-42480256 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 213
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 11, 40

Conread position: 1-291
Cow position: chr4:55670565-55670263 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 224
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 15, 175

Conread position: 1-291
Cow position: chr4:61817079-61817385 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr4:67767744-67767438 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 218
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 230

Conread position: 1-295
Cow position: chr4:65816346-65816644 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 228
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 11, 32

Conread position: 1-296
Cow position: chr4:54501957-54502276 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 241
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 11, 81

Conread position: 1-297
Cow position: chr4:3284039-3284345 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 228

Conread position: 1-297
Cow position: chr4:3849919-3849612 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 232
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 115, 13

Conread position: 1-297
Cow position: chr4:7806493-7806181 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 63

Conread position: 1-297
Cow position: chr4:17067788-17068099 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 218
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 13, 230

Conread position: 1-297
Cow position: chr4:19141343-19141015 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 241

Conread position: 1-297
Cow position: chr4:23494285-23493990 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 223
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 13, 117

Conread position: 1-297
Cow position: chr4:25983601-25983302 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 234
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 11, 116

Conread position: 1-297
Cow position: chr4:27292591-27292875 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 230
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 11, 35

Conread position: 1-297
Cow position: chr4:27539988-27539676 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 87

Conread position: 1-297
Cow position: chr4:30508524-30508211 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 232

Conread position: 1-297
Cow position: chr4:44901588-44901268 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 228
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 11, 147

Conread position: 1-297
Cow position: chr4:58292055-58291753 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 225
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 13, 118

Conread position: 1-297
Cow position: chr4:66174001-66174308 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 78

Conread position: 7-297
Cow position: chr4:68386840-68386537 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 227
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 21, 75

Conread position: 9-291
Cow position: chr4:55509530-55509836 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 223
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 22, 225

Conread position: 10-296
Cow position: chr4:52086476-52086170 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 218
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 20, 16

Conread position: 12-287
Cow position: chr4:9041253-9040969 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 104, 212

Conread position: 12-287
Cow position: chr4:15056110-15055826 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 204
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 104, 212

Conread position: 15-287
Cow position: chr4:3170584-3170303 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 203
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 101, 204

Conread position: 15-290
Cow position: chr4:162384-162101 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 204
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 108, 210

Conread position: 15-291
Cow position: chr4:1927331-1927616 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 206
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 101, 209

Conread position: 15-291
Cow position: chr4:2601504-2601228 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 100, 35

Conread position: 15-291
Cow position: chr4:6446064-6445780 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 207
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 101, 158

Conread position: 15-291
Cow position: chr4:8678108-8677820 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 208
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 16, 212

Conread position: 15-291
Cow position: chr4:17877262-17876976 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 209
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 101, 209

Conread position: 15-291
Cow position: chr4:33020328-33020613 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 201
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 101, 209

Conread position: 15-291
Cow position: chr4:35929779-35929502 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 206
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 17, 36

Conread position: 15-291
Cow position: chr4:38584181-38583899 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 202
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 101, 163

Conread position: 15-293
Cow position: chr4:47774285-47774575 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 215
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 15, 105

Conread position: 15-297
Cow position: chr4:3474974-3474689 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 196

Conread position: 17-297
Cow position: chr4:34700257-34700539 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 40

Conread position: 26-286
Cow position: chr4:23451733-23451992 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 195
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 166, 95

Conread position: 26-287
Cow position: chr4:6265923-6266193 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 197
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 90, 198

Conread position: 26-287
Cow position: chr4:17751649-17751911 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 198
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 90, 133

Conread position: 26-287
Cow position: chr4:19049554-19049284 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 193
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 90, 199

Conread position: 26-287
Cow position: chr4:33171449-33171179 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 194
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 90, 198

Conread position: 26-291
Cow position: chr4:11201159-11200887 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 205
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 46, 25

Conread position: 26-291
Cow position: chr4:44777899-44778173 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 202
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 90, 198

Conread position: 26-292
Cow position: chr4:11100310-11100578 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 204
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 166, 84

Conread position: 26-296
Cow position: chr4:62569983-62569711 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 193
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 76, 207

Conread position: 26-297
Cow position: chr4:26548756-26548482 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 209
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 166, 71

Conread position: 26-297
Cow position: chr4:54190057-54189782 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 193

Conread position: 26-297
Cow position: chr4:67600386-67600657 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 205
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 90, 47

Conread position: 37-291
Cow position: chr4:11025937-11026196 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 184
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 86, 213

Conread position: 37-293
Cow position: chr4:12751657-12751381 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 197
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 82, 64

Conread position: 37-296
Cow position: chr4:48496960-48496691 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 195
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 54, 190

Conread position: 40-291
Cow position: chr4:18335672-18335931 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 190
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 76, 184

Conread position: 41-296
Cow position: chr4:7048793-7049049 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 190
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 212, 126

Conread position: 42-287
Cow position: chr4:10424769-10424515 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 184
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 74, 182

Conread position: 42-297
Cow position: chr4:962307-962577 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 199
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 49, 137

Conread position: 43-296
Cow position: chr4:36812285-36812033 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 186
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 149, 73

Conread position: 44-297
Cow position: chr4:16605887-16606162 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 210
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 60, 186

Conread position: 53-287
Cow position: chr4:26885657-26885900 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 63, 171

Conread position: 53-291
Cow position: chr4:54973311-54973069 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 64, 20

Conread position: 54-291
Cow position: chr4:6862977-6863212 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 168
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 59

Conread position: 67-287
Cow position: chr4:36074272-36074043 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 49, 157

Conread position: 76-296
Cow position: chr4:36755028-36754799 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 174
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 47, 25

Conread position: 77-291
Cow position: chr4:38153058-38153281 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 39, 147

Conread position: 92-296
Cow position: chr4:41038050-41037842 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 100, 25

Conread position: 121-295
Cow position: chr4:52648561-52648383 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 71, 102

Show alignments to all cow chromosomes.