Cow genome map

Conread name: rpfco0123_l11.y1

Conread position: 1-287
Cow position: chr6:3987492-3987794 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr6:6568670-6568969 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 213
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 13, 156

Conread position: 1-287
Cow position: chr6:7137778-7138080 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 220
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 13, 118

Conread position: 1-287
Cow position: chr6:8382503-8382201 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr6:10044770-10044477 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 219
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 13, 165

Conread position: 1-287
Cow position: chr6:11020222-11019920 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr6:11389050-11389352 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 217
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 13, 0

Conread position: 1-287
Cow position: chr6:11401884-11401582 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr6:11453303-11453605 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 14, 230

Conread position: 1-287
Cow position: chr6:17387087-17386785 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr6:19712681-19712983 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr6:20215832-20216134 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr6:20581215-20581514 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 13, 63

Conread position: 1-287
Cow position: chr6:21163867-21163565 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr6:22737142-22737444 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 231

Conread position: 1-287
Cow position: chr6:26324636-26324938 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr6:27094023-27094325 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr6:33808870-33809172 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr6:39897499-39897801 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr6:45479524-45479826 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr6:45901429-45901730 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 118

Conread position: 1-287
Cow position: chr6:45976063-45975761 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr6:48882307-48882009 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 222
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 13, 165

Conread position: 1-287
Cow position: chr6:53537640-53537338 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr6:55361231-55361533 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr6:56451542-56451833 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 211
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 13, 93

Conread position: 1-287
Cow position: chr6:57329842-57329540 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr6:57521739-57521437 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr6:60379727-60379425 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr6:63177607-63177305 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr6:63714712-63715014 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 13, 230

Conread position: 1-290
Cow position: chr6:16418127-16418423 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 214
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 13, 118

Conread position: 1-291
Cow position: chr6:7467087-7467392 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 118

Conread position: 1-291
Cow position: chr6:13307834-13308140 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 225
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr6:14929011-14928717 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 212
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 13, 63

Conread position: 1-291
Cow position: chr6:17344763-17344456 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 226
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 12, 231

Conread position: 1-291
Cow position: chr6:18803495-18803801 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 212
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr6:18912171-18912476 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 14, 172

Conread position: 1-291
Cow position: chr6:21712270-21711964 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr6:26667461-26667766 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 220
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 13, 229

Conread position: 1-291
Cow position: chr6:37388130-37387824 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 218
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr6:43087051-43087340 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 210
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 13, 80

Conread position: 1-291
Cow position: chr6:46763842-46764148 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr6:52697155-52696842 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 223
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 13, 238

Conread position: 1-291
Cow position: chr6:53542919-53543225 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr6:67553796-67553490 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 13, 230

Conread position: 1-294
Cow position: chr6:3152776-3152479 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 212
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 13, 221

Conread position: 1-297
Cow position: chr6:46283541-46283847 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 116

Conread position: 1-297
Cow position: chr6:54472088-54472394 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 236
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 11, 149

Conread position: 1-297
Cow position: chr6:65847809-65848117 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 221
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 11, 107

Conread position: 4-297
Cow position: chr6:47574346-47574042 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 97

Conread position: 6-287
Cow position: chr6:58036835-58036543 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 215

Conread position: 6-291
Cow position: chr6:21832106-21832403 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 207
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 5, 55

Conread position: 6-297
Cow position: chr6:19103352-19103657 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 215
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 5, 222

Conread position: 7-291
Cow position: chr6:17149627-17149909 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 76

Conread position: 12-291
Cow position: chr6:16049746-16050035 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 209
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 20, 213

Conread position: 15-287
Cow position: chr6:1245378-1245659 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 209

Conread position: 15-287
Cow position: chr6:12971939-12971658 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 101, 209

Conread position: 15-287
Cow position: chr6:17111623-17111903 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 205
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 101, 209

Conread position: 15-287
Cow position: chr6:31912632-31912913 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 205
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 101, 209

Conread position: 15-287
Cow position: chr6:45937822-45937541 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 205
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 101, 204

Conread position: 15-291
Cow position: chr6:327820-328105 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 201
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 101, 158

Conread position: 15-291
Cow position: chr6:11869389-11869676 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 210
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 16, 205

Conread position: 15-291
Cow position: chr6:39912865-39912580 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 101, 209

Conread position: 15-291
Cow position: chr6:46225419-46225704 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 210
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 16, 173

Conread position: 15-291
Cow position: chr6:63040790-63041071 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 204
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 101, 208

Conread position: 15-292
Cow position: chr6:56842566-56842278 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 215

Conread position: 15-296
Cow position: chr6:16625333-16625033 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 209
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 85, 207

Conread position: 15-296
Cow position: chr6:24583861-24584145 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 216
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 100, 44

Conread position: 15-297
Cow position: chr6:28000853-28001145 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 101, 209

Conread position: 15-297
Cow position: chr6:53461625-53461927 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 52

Conread position: 21-299
Cow position: chr6:32018567-32018865 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 54

Conread position: 24-297
Cow position: chr6:32287088-32286803 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 198

Conread position: 26-287
Cow position: chr6:28184789-28185057 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 196
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 90, 71

Conread position: 26-291
Cow position: chr6:55593602-55593328 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 202
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 90, 199

Conread position: 26-297
Cow position: chr6:38439142-38438858 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 49

Conread position: 28-296
Cow position: chr6:55474843-55474559 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 207
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 78, 198

Conread position: 37-287
Cow position: chr6:42897709-42897449 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 188
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 60, 191

Conread position: 37-291
Cow position: chr6:19719088-19718843 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 80, 30

Conread position: 37-291
Cow position: chr6:28102352-28102611 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 199
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 79, 123

Conread position: 37-291
Cow position: chr6:54887071-54887334 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 184
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 13, 34

Conread position: 37-300
Cow position: chr6:7191107-7191363 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 199
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 155, 6

Conread position: 39-297
Cow position: chr6:1498720-1498450 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 111

Conread position: 40-291
Cow position: chr6:20267799-20268056 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 188
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 76, 27

Conread position: 40-291
Cow position: chr6:43187627-43187367 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 188
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 83, 179

Conread position: 54-291
Cow position: chr6:2618061-2618308 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 190
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 45, 111

Conread position: 56-287
Cow position: chr6:508019-508260 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 60, 168

Conread position: 63-296
Cow position: chr6:10612320-10612085 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 177
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 129, 47

Conread position: 66-297
Cow position: chr6:52249016-52249262 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 188
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 53, 107

Conread position: 82-287
Cow position: chr6:653322-653535 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 34, 15

Conread position: 94-297
Cow position: chr6:3893176-3893390 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 98, 9

Conread position: 129-297
Cow position: chr6:7112510-7112695 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 0

Show alignments to all cow chromosomes.