Cow genome map

Conread name: rpfco0123_l11.y1

Conread position: 1-287
Cow position: chr9:174282-174582 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 107

Conread position: 1-287
Cow position: chr9:1062203-1062505 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr9:5430959-5430657 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 210
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr9:5452147-5452449 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr9:9611394-9611696 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr9:10803165-10802864 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 217
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 13, 229

Conread position: 1-287
Cow position: chr9:13620504-13620806 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr9:16639767-16639465 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr9:18243490-18243792 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr9:24424015-24423713 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr9:26326238-26325937 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr9:28681693-28681391 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 210
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 13, 231

Conread position: 1-287
Cow position: chr9:31417023-31417325 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr9:35565046-35565348 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr9:36829559-36829861 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr9:37253897-37253595 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr9:37908341-37908038 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 220
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 13, 231

Conread position: 1-287
Cow position: chr9:39303060-39303362 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr9:42475594-42475892 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 13, 91

Conread position: 1-287
Cow position: chr9:43494541-43494239 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr9:43496627-43496325 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr9:46667305-46667607 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 220
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 13, 181

Conread position: 1-287
Cow position: chr9:50327189-50326887 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr9:60409895-60409593 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr9:62817728-62818030 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 13, 230

Conread position: 1-287
Cow position: chr9:64011737-64012038 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 13, 95

Conread position: 1-290
Cow position: chr9:30187198-30186894 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 221
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 13, 225

Conread position: 1-291
Cow position: chr9:771756-772061 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 212
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 7, 69

Conread position: 1-291
Cow position: chr9:2495248-2495554 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 212
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 11, 223

Conread position: 1-291
Cow position: chr9:2834508-2834813 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 214
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 13, 222

Conread position: 1-291
Cow position: chr9:22570596-22570291 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 222
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 13, 229

Conread position: 1-291
Cow position: chr9:30281526-30281829 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 219
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 11, 119

Conread position: 1-291
Cow position: chr9:34690041-34690343 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 219
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 13, 166

Conread position: 1-291
Cow position: chr9:46627803-46627498 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 229

Conread position: 1-291
Cow position: chr9:47006226-47005920 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 221
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 118

Conread position: 1-291
Cow position: chr9:47171546-47171240 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr9:48794799-48795105 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 222
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 1-291
Cow position: chr9:52001610-52001923 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 231
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 11, 232

Conread position: 1-296
Cow position: chr9:29338391-29338089 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 105

Conread position: 1-296
Cow position: chr9:33068001-33068319 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 93

Conread position: 1-297
Cow position: chr9:4673549-4673236 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 225
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 81

Conread position: 1-297
Cow position: chr9:15052406-15052708 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 220
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 14, 118

Conread position: 1-297
Cow position: chr9:18071973-18071663 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 95

Conread position: 1-297
Cow position: chr9:23028536-23028849 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 226

Conread position: 1-297
Cow position: chr9:26087519-26087822 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 113

Conread position: 1-297
Cow position: chr9:28821958-28822265 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 96

Conread position: 1-297
Cow position: chr9:33843816-33843503 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 223
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 230

Conread position: 1-297
Cow position: chr9:45383719-45383407 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 226
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 13, 230

Conread position: 1-297
Cow position: chr9:62400815-62401140 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 239
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 11, 164

Conread position: 1-298
Cow position: chr9:42053038-42053350 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 224
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 13, 230

Conread position: 2-290
Cow position: chr9:51556457-51556155 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 101

Conread position: 2-291
Cow position: chr9:29193083-29193383 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 219
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 10, 78

Conread position: 4-291
Cow position: chr9:54459019-54459315 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 212
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 112, 226

Conread position: 7-291
Cow position: chr9:2681968-2681675 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 109, 217

Conread position: 9-291
Cow position: chr9:28785820-28785531 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 208
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 107, 214

Conread position: 10-291
Cow position: chr9:22803172-22803464 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 213
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 21, 162

Conread position: 12-287
Cow position: chr9:3052739-3052456 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 104, 69

Conread position: 12-291
Cow position: chr9:12378920-12378635 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 209
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 104, 173

Conread position: 14-291
Cow position: chr9:2548222-2548508 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 204
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 17, 157

Conread position: 15-287
Cow position: chr9:1100066-1099785 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 195
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 101, 210

Conread position: 15-287
Cow position: chr9:6707446-6707727 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 199
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 101, 209

Conread position: 15-287
Cow position: chr9:8281802-8282079 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 109, 19

Conread position: 15-287
Cow position: chr9:13313029-13312754 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 199
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 101, 209

Conread position: 15-287
Cow position: chr9:50840904-50840623 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 198
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 101, 209

Conread position: 15-290
Cow position: chr9:8387292-8387008 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 207
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 101, 209

Conread position: 15-291
Cow position: chr9:874125-873839 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 198
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 107, 210

Conread position: 15-291
Cow position: chr9:18710964-18710680 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 207
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 101, 209

Conread position: 15-291
Cow position: chr9:34238284-34238572 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 209
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 16, 212

Conread position: 15-291
Cow position: chr9:50900173-50900449 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 16, 98

Conread position: 15-294
Cow position: chr9:17302508-17302794 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 209

Conread position: 15-297
Cow position: chr9:21841105-21841383 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 209
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 87, 228

Conread position: 15-297
Cow position: chr9:58615218-58615515 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 211

Conread position: 15-297
Cow position: chr9:61739583-61739870 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 213

Conread position: 26-291
Cow position: chr9:2208211-2208482 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 192
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 90, 201

Conread position: 26-291
Cow position: chr9:2873936-2873661 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 205
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 90, 198

Conread position: 31-291
Cow position: chr9:37168910-37168653 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 191
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 35, 45

Conread position: 31-297
Cow position: chr9:46670376-46670112 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 196
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 161, 66

Conread position: 33-291
Cow position: chr9:10678482-10678743 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 192
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 159, 50

Conread position: 36-297
Cow position: chr9:23422040-23421767 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 209
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 81, 174

Conread position: 37-287
Cow position: chr9:13187654-13187395 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 79, 187

Conread position: 38-297
Cow position: chr9:18008048-18007778 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 199
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 68, 176

Conread position: 43-297
Cow position: chr9:28773826-28774086 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 199
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 68, 30

Conread position: 44-287
Cow position: chr9:52526594-52526342 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 185
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 72, 180

Conread position: 46-287
Cow position: chr9:7830465-7830712 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 181
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 76, 66

Conread position: 46-291
Cow position: chr9:54996072-54995822 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 53, 172

Conread position: 50-296
Cow position: chr9:54413173-54413427 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 184
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 66, 174

Conread position: 52-291
Cow position: chr9:40316569-40316323 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 186
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 64, 175

Conread position: 52-297
Cow position: chr9:9623365-9623119 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 191
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 124, 38

Conread position: 65-287
Cow position: chr9:55758863-55758633 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 163
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 51, 7

Conread position: 69-297
Cow position: chr9:10671929-10672154 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 125, 27

Conread position: 89-287
Cow position: chr9:45792246-45792039 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 135

Conread position: 97-291
Cow position: chr9:36622109-36621908 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 98, 52

Conread position: 100-295
Cow position: chr9:3222851-3222654 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 157
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 23, 41

Conread position: 106-296
Cow position: chr9:46524840-46525037 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 86, 14

Conread position: 126-297
Cow position: chr9:22438856-22438680 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 66, 19

Show alignments to all cow chromosomes.