Cow genome map

Conread name: rpfco0129_n4.y1

Conread position: 3-503
Cow position: chr12:27055168-27055677 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 199

Conread position: 4-492
Cow position: chr12:47800249-47799763 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 66

Conread position: 4-503
Cow position: chr12:3211885-3212389 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 31

Conread position: 4-503
Cow position: chr12:35718490-35718017 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 29

Conread position: 5-377
Cow position: chr12:47486098-47486463 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 244
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 153, 57

Conread position: 5-486
Cow position: chr12:27803479-27802994 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 64

Conread position: 5-491
Cow position: chr12:8869326-8868822 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 38

Conread position: 5-503
Cow position: chr12:21828650-21829144 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 63

Conread position: 6-488
Cow position: chr12:20312585-20312112 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 38

Conread position: 8-447
Cow position: chr12:15259141-15258702 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 62

Conread position: 8-450
Cow position: chr12:5146403-5146833 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 61

Conread position: 8-482
Cow position: chr12:31218008-31218507 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 334
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 49, 62

Conread position: 8-494
Cow position: chr12:25312809-25312311 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 61

Conread position: 8-503
Cow position: chr12:25606266-25606778 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 64

Conread position: 9-293
Cow position: chr12:36368630-36368920 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 194
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 130, 59

Conread position: 10-498
Cow position: chr12:6240878-6241386 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 22

Conread position: 13-437
Cow position: chr12:19865816-19866240 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 8

Conread position: 13-490
Cow position: chr12:35368204-35368700 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 321
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 55, 8

Conread position: 14-491
Cow position: chr12:18123262-18123729 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 323
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 174, 24

Conread position: 15-426
Cow position: chr12:35707355-35706940 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 287
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 17, 55

Conread position: 16-503
Cow position: chr12:24558914-24559430 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 55

Conread position: 20-424
Cow position: chr12:31228164-31228560 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 285
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 14, 52

Conread position: 22-390
Cow position: chr12:35807266-35807637 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 54

Conread position: 26-297
Cow position: chr12:15107290-15107560 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 195
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 160, 43

Conread position: 31-489
Cow position: chr12:30753317-30753777 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 38

Conread position: 35-484
Cow position: chr12:44743065-44743546 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 322
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 102, 37

Conread position: 38-503
Cow position: chr12:30596064-30596540 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 31

Conread position: 55-361
Cow position: chr12:794157-794487 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 241
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 73, 18

Conread position: 66-503
Cow position: chr12:27039138-27038671 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 60

Conread position: 69-500
Cow position: chr12:47803783-47804225 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 99

Conread position: 75-486
Cow position: chr12:12304038-12304436 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 269
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 385, 51

Conread position: 82-501
Cow position: chr12:1223702-1223275 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 87

Conread position: 99-428
Cow position: chr12:16851350-16851014 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 54

Conread position: 108-411
Cow position: chr12:32399862-32400177 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 212
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 34, 69

Conread position: 114-317
Cow position: chr12:31925327-31925530 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 74, 26

Conread position: 117-501
Cow position: chr12:44057182-44057584 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 278
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 70, 273

Conread position: 134-489
Cow position: chr12:29448337-29448706 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 258
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 55, 24

Conread position: 134-503
Cow position: chr12:31198461-31198839 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 61

Conread position: 135-501
Cow position: chr12:18769382-18769001 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 315

Conread position: 135-503
Cow position: chr12:3757343-3756975 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 99

Conread position: 136-481
Cow position: chr12:6411033-6410684 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 247
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 52, 125

Conread position: 137-495
Cow position: chr12:33457844-33458211 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 140-356
Cow position: chr12:15622757-15622523 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 182
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 90, 0

Conread position: 142-495
Cow position: chr12:16543867-16543516 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 248
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 46, 26

Conread position: 142-503
Cow position: chr12:28582791-28582438 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 242
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 47, 95

Conread position: 145-361
Cow position: chr12:18081839-18081622 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 164
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 43, 92

Conread position: 148-491
Cow position: chr12:5899234-5899571 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 243
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 40, 163

Conread position: 149-486
Cow position: chr12:14523632-14523986 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 176

Conread position: 150-502
Cow position: chr12:23379283-23379642 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 259
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 38, 49

Conread position: 153-489
Cow position: chr12:1504739-1505076 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 242
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 35, 15

Conread position: 154-482
Cow position: chr12:43104242-43104562 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 232
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 32, 139

Conread position: 160-489
Cow position: chr12:5797825-5797504 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 168

Conread position: 168-450
Cow position: chr12:35354511-35354796 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 217
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 19, 180

Conread position: 168-466
Cow position: chr12:48405858-48406140 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 220
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 20, 8

Conread position: 170-497
Cow position: chr12:28559024-28559360 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 128

Conread position: 172-485
Cow position: chr12:8595621-8595954 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 233
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 24, 121

Conread position: 186-427
Cow position: chr12:1487783-1488037 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 59, 0

Conread position: 186-503
Cow position: chr12:30064690-30065007 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 156

Conread position: 187-487
Cow position: chr12:38484651-38484338 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 44

Conread position: 196-501
Cow position: chr12:41642191-41642501 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 222
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 72, 126

Conread position: 200-446
Cow position: chr12:40028995-40028740 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 178
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 68, 56

Conread position: 211-503
Cow position: chr12:32413278-32413587 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 226
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 25, 145

Conread position: 212-395
Cow position: chr12:6117672-6117864 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 32, 166

Conread position: 214-503
Cow position: chr12:48425495-48425781 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 210
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 30, 82

Conread position: 217-424
Cow position: chr12:16631717-16631922 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 45, 56

Conread position: 217-503
Cow position: chr12:27495783-27496073 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 214
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 24, 5

Conread position: 219-503
Cow position: chr12:21862005-21861736 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 202
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 49, 90

Conread position: 269-500
Cow position: chr12:27365760-27365995 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 62, 37

Conread position: 269-503
Cow position: chr12:15230981-15230745 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 166
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 70, 16

Conread position: 272-491
Cow position: chr12:3134659-3134447 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 40, 62

Conread position: 279-503
Cow position: chr12:14325424-14325200 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 164
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 25, 41

Conread position: 281-503
Cow position: chr12:17110045-17109824 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 54, 40

Conread position: 295-493
Cow position: chr12:18552882-18553071 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 24, 46

Conread position: 336-486
Cow position: chr12:39283084-39282939 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 141, 28

Conread position: 336-503
Cow position: chr12:5658846-5658675 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 86, 112

Conread position: 337-480
Cow position: chr12:33757009-33756864 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 86, 116

Conread position: 337-501
Cow position: chr12:31528947-31528786 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 89, 24

Conread position: 337-502
Cow position: chr12:4582848-4583016 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 47, 27

Conread position: 337-503
Cow position: chr12:24204405-24204241 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 156, 50

Conread position: 338-491
Cow position: chr12:29691298-29691137 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 340-503
Cow position: chr12:40716134-40715973 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 14, 0

Conread position: 351-503
Cow position: chr12:18966837-18966685 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 70, 33

Conread position: 364-503
Cow position: chr12:17262784-17262923 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 368-474
Cow position: chr12:5735459-5735355 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 373-503
Cow position: chr12:7645865-7645737 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 108
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 30, 0

Conread position: 374-503
Cow position: chr12:47063934-47063806 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 85, 0

Conread position: 383-501
Cow position: chr12:5497874-5497756 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position: chr12:45541662-45541779 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 100
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 394-503
Cow position: chr12:14855772-14855882 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 398-501
Cow position: chr12:39754249-39754352 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 87
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.