Cow genome map

Conread name: rpfco0129_n4.y1

Conread position: 3-491
Cow position:
Alignm length: 498
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 66

Conread position: 3-503
Cow position:
Alignm length: 516
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 29

Conread position: 3-503
Cow position:
Alignm length: 507
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 66

Conread position: 3-503
Cow position:
Alignm length: 527
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 67

Conread position: 4-482
Cow position:
Alignm length: 493
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 66

Conread position: 5-503
Cow position:
Alignm length: 528
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 108

Conread position: 6-403
Cow position:
Alignm length: 422
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 63

Conread position: 6-447
Cow position:
Alignm length: 463
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 37

Conread position: 6-494
Cow position:
Alignm length: 500
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 63

Conread position: 6-503
Cow position:
Alignm length: 516
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 28

Conread position: 6-503
Cow position:
Alignm length: 518
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 65

Conread position: 7-477
Cow position:
Alignm length: 478
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 63

Conread position: 7-503
Cow position:
Alignm length: 507
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 33

Conread position: 8-381
Cow position:
Alignm length: 387
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 61

Conread position: 8-427
Cow position:
Alignm length: 439
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 61

Conread position: 8-469
Cow position:
Alignm length: 479
Alignm identity: 315
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 122, 62

Conread position: 8-485
Cow position:
Alignm length: 505
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 61

Conread position: 8-490
Cow position:
Alignm length: 512
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 61

Conread position: 8-500
Cow position:
Alignm length: 531
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 60

Conread position: 8-503
Cow position:
Alignm length: 511
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 62

Conread position: 9-491
Cow position:
Alignm length: 507
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 61

Conread position: 10-395
Cow position:
Alignm length: 398
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 44

Conread position: 11-316
Cow position:
Alignm length: 313
Alignm identity: 222
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 29, 10

Conread position: 12-501
Cow position:
Alignm length: 502
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 57

Conread position: 12-503
Cow position:
Alignm length: 505
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 57

Conread position: 13-339
Cow position:
Alignm length: 332
Alignm identity: 223
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 173, 56

Conread position: 13-490
Cow position:
Alignm length: 486
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 56

Conread position: 13-490
Cow position:
Alignm length: 489
Alignm identity: 324
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 34, 8

Conread position: 14-292
Cow position:
Alignm length: 280
Alignm identity: 193
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 172, 37

Conread position: 14-426
Cow position:
Alignm length: 419
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 56

Conread position: 14-485
Cow position:
Alignm length: 482
Alignm identity: 308
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 174, 29

Conread position: 14-503
Cow position:
Alignm length: 502
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 55

Conread position: 16-353
Cow position:
Alignm length: 344
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 53

Conread position: 16-446
Cow position:
Alignm length: 442
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 52

Conread position: 16-480
Cow position:
Alignm length: 478
Alignm identity: 316
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 172, 53

Conread position: 22-486
Cow position:
Alignm length: 474
Alignm identity: 314
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 69, 53

Conread position: 28-503
Cow position:
Alignm length: 486
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 41

Conread position: 38-427
Cow position:
Alignm length: 397
Alignm identity: 269
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 108, 31

Conread position: 40-497
Cow position:
Alignm length: 473
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 29

Conread position: 46-495
Cow position:
Alignm length: 463
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 26

Conread position: 53-317
Cow position:
Alignm length: 271
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 16

Conread position: 53-487
Cow position:
Alignm length: 456
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 17

Conread position: 58-479
Cow position:
Alignm length: 442
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 11

Conread position: 73-495
Cow position:
Alignm length: 450
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 87

Conread position: 78-420
Cow position:
Alignm length: 358
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 26

Conread position: 81-501
Cow position:
Alignm length: 443
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 38

Conread position: 88-426
Cow position:
Alignm length: 352
Alignm identity: 235
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 100, 40

Conread position: 88-486
Cow position:
Alignm length: 408
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 76

Conread position: 90-290
Cow position:
Alignm length: 207
Alignm identity: 147
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 98, 129

Conread position: 92-503
Cow position:
Alignm length: 434
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 297

Conread position: 94-490
Cow position:
Alignm length: 428
Alignm identity: 283
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 46, 178

Conread position: 109-503
Cow position:
Alignm length: 413
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 42

Conread position: 122-441
Cow position:
Alignm length: 325
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 51

Conread position: 134-392
Cow position:
Alignm length: 276
Alignm identity: 193
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 12, 0

Conread position: 134-434
Cow position:
Alignm length: 306
Alignm identity: 203
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 127, 29

Conread position: 135-481
Cow position:
Alignm length: 366
Alignm identity: 247
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 53, 114

Conread position: 135-491
Cow position:
Alignm length: 372
Alignm identity: 247
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 53, 179

Conread position: 135-494
Cow position:
Alignm length: 367
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 167

Conread position: 135-495
Cow position:
Alignm length: 378
Alignm identity: 266
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 11, 35

Conread position: 135-500
Cow position:
Alignm length: 382
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 28

Conread position: 136-477
Cow position:
Alignm length: 353
Alignm identity: 245
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 12, 29

Conread position: 137-503
Cow position:
Alignm length: 382
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 137

Conread position: 140-481
Cow position:
Alignm length: 355
Alignm identity: 242
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 48, 98

Conread position: 140-482
Cow position:
Alignm length: 360
Alignm identity: 244
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 97, 36

Conread position: 140-490
Cow position:
Alignm length: 366
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 207

Conread position: 142-470
Cow position:
Alignm length: 333
Alignm identity: 224
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 15, 110

Conread position: 142-495
Cow position:
Alignm length: 366
Alignm identity: 254
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 46, 153

Conread position: 143-503
Cow position:
Alignm length: 375
Alignm identity: 259
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 5, 146

Conread position: 144-503
Cow position:
Alignm length: 376
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 128

Conread position: 145-491
Cow position:
Alignm length: 358
Alignm identity: 244
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 32, 200

Conread position: 145-503
Cow position:
Alignm length: 380
Alignm identity: 266
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 41, 193

Conread position: 146-490
Cow position:
Alignm length: 352
Alignm identity: 225
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 117, 30

Conread position: 146-492
Cow position:
Alignm length: 365
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 93

Conread position: 146-503
Cow position:
Alignm length: 371
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 147-503
Cow position:
Alignm length: 364
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 113

Conread position: 150-489
Cow position:
Alignm length: 350
Alignm identity: 245
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 38, 56

Conread position: 152-486
Cow position:
Alignm length: 340
Alignm identity: 226
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 34, 187

Conread position: 152-490
Cow position:
Alignm length: 355
Alignm identity: 244
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 36, 223

Conread position: 152-503
Cow position:
Alignm length: 364
Alignm identity: 245
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 36, 193

Conread position: 156-494
Cow position:
Alignm length: 345
Alignm identity: 239
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 32, 12

Conread position: 161-502
Cow position:
Alignm length: 359
Alignm identity: 257
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 27, 215

Conread position: 168-488
Cow position:
Alignm length: 329
Alignm identity: 227
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 74, 27

Conread position: 168-489
Cow position:
Alignm length: 333
Alignm identity: 224
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 20, 64

Conread position: 169-500
Cow position:
Alignm length: 335
Alignm identity: 222
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 19, 67

Conread position: 169-503
Cow position:
Alignm length: 348
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 56

Conread position: 170-480
Cow position:
Alignm length: 325
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 126

Conread position: 174-503
Cow position:
Alignm length: 334
Alignm identity: 237
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 12, 117

Conread position: 175-503
Cow position:
Alignm length: 339
Alignm identity: 242
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 13, 62

Conread position: 176-473
Cow position:
Alignm length: 311
Alignm identity: 218
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 12, 201

Conread position: 176-502
Cow position:
Alignm length: 337
Alignm identity: 237
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 12, 34

Conread position: 178-480
Cow position:
Alignm length: 305
Alignm identity: 220
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 8, 72

Conread position: 181-503
Cow position:
Alignm length: 327
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 40

Conread position: 185-477
Cow position:
Alignm length: 303
Alignm identity: 199
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 38, 132

Conread position: 185-503
Cow position:
Alignm length: 333
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 34

Conread position: 185-503
Cow position:
Alignm length: 332
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 34

Conread position: 191-495
Cow position:
Alignm length: 313
Alignm identity: 218
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 9, 43

Conread position: 194-501
Cow position:
Alignm length: 329
Alignm identity: 229
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 7, 152

Conread position: 198-500
Cow position:
Alignm length: 312
Alignm identity: 213
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 135, 51

Conread position: 200-431
Cow position:
Alignm length: 244
Alignm identity: 181
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 44, 184

Conread position: 207-503
Cow position:
Alignm length: 313
Alignm identity: 215
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 37, 167

Conread position: 211-495
Cow position:
Alignm length: 292
Alignm identity: 201
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 18, 50

Conread position: 217-503
Cow position:
Alignm length: 299
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 167

Conread position: 217-503
Cow position:
Alignm length: 296
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 188

Conread position: 218-503
Cow position:
Alignm length: 293
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 161

Conread position: 227-503
Cow position:
Alignm length: 285
Alignm identity: 207
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 39, 12

Conread position: 231-503
Cow position:
Alignm length: 280
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 70

Conread position: 233-447
Cow position:
Alignm length: 216
Alignm identity: 156
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 182, 28

Conread position: 234-447
Cow position:
Alignm length: 223
Alignm identity: 166
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 30, 148

Conread position: 235-503
Cow position:
Alignm length: 282
Alignm identity: 201
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 23, 93

Conread position: 237-503
Cow position:
Alignm length: 273
Alignm identity: 200
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 31, 15

Conread position: 256-502
Cow position:
Alignm length: 256
Alignm identity: 185
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 12, 34

Conread position: 259-503
Cow position:
Alignm length: 250
Alignm identity: 171
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 159

Conread position: 274-503
Cow position:
Alignm length: 231
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 61

Conread position: 278-490
Cow position:
Alignm length: 217
Alignm identity: 161
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 55, 94

Conread position: 278-503
Cow position:
Alignm length: 229
Alignm identity: 174
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 14, 114

Conread position: 281-499
Cow position:
Alignm length: 226
Alignm identity: 166
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 50, 113

Conread position: 288-495
Cow position:
Alignm length: 212
Alignm identity: 161
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 43, 84

Conread position: 291-494
Cow position:
Alignm length: 212
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 291-503
Cow position:
Alignm length: 222
Alignm identity: 168
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 25, 81

Conread position: 295-503
Cow position:
Alignm length: 210
Alignm identity: 159
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 176, 29

Conread position: 308-503
Cow position:
Alignm length: 200
Alignm identity: 144
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 25, 0

Conread position: 337-495
Cow position:
Alignm length: 159
Alignm identity: 129
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 36, 0

Conread position: 339-495
Cow position:
Alignm length: 158
Alignm identity: 121
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 141, 40

Conread position: 349-503
Cow position:
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 353-503
Cow position:
Alignm length: 151
Alignm identity: 123
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 20, 0

Conread position: 355-503
Cow position:
Alignm length: 153
Alignm identity: 121
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 88, 9

Conread position: 369-503
Cow position:
Alignm length: 136
Alignm identity: 108
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 53, 27

Conread position: 395-503
Cow position:
Alignm length: 109
Alignm identity: 86
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 398-503
Cow position:
Alignm length: 106
Alignm identity: 87
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 404-501
Cow position:
Alignm length: 102
Alignm identity: 85
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 25, 0

Show alignments to all cow chromosomes.