Cow genome map

Conread name: rpfco0129_n4.y1

Conread position: 3-503
Cow position: chr18:40203222-40202734 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 54

Conread position: 4-495
Cow position: chr18:45961691-45961202 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 67

Conread position: 4-503
Cow position: chr18:16842503-16841975 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 72

Conread position: 6-372
Cow position: chr18:43463847-43463463 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 269
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 120, 63

Conread position: 6-447
Cow position: chr18:22874444-22874887 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 63

Conread position: 6-447
Cow position: chr18:50993701-50993249 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 63

Conread position: 6-502
Cow position: chr18:4039749-4040245 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 63

Conread position: 6-503
Cow position: chr18:17334822-17334344 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 12

Conread position: 6-503
Cow position: chr18:55697443-55696947 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 63

Conread position: 7-427
Cow position: chr18:26535926-26535511 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 297
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 181, 25

Conread position: 8-381
Cow position: chr18:51538107-51537710 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 269
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 100, 61

Conread position: 8-500
Cow position: chr18:21682393-21681899 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 24

Conread position: 8-503
Cow position: chr18:21938929-21939431 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 61

Conread position: 10-483
Cow position: chr18:51500501-51500018 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 59

Conread position: 11-367
Cow position: chr18:6881751-6881409 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 242
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 177, 10

Conread position: 12-491
Cow position: chr18:10656024-10656504 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 326
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 11, 58

Conread position: 13-423
Cow position: chr18:50082654-50082256 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 284
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 161, 52

Conread position: 13-503
Cow position: chr18:33274873-33275366 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 56

Conread position: 14-478
Cow position: chr18:11376951-11377416 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 326
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 174, 55

Conread position: 14-485
Cow position: chr18:17004834-17005320 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 325
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 174, 54

Conread position: 14-503
Cow position: chr18:25003296-25002813 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 6

Conread position: 24-483
Cow position: chr18:34052388-34051934 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 313
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 164, 22

Conread position: 26-491
Cow position: chr18:17324304-17324766 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 323
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 33, 45

Conread position: 27-425
Cow position: chr18:21195746-21195347 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 42

Conread position: 27-501
Cow position: chr18:51486855-51486389 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 311
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 45, 67

Conread position: 56-359
Cow position: chr18:26286535-26286842 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 213
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 62, 13

Conread position: 66-283
Cow position: chr18:49660409-49660188 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 108, 0

Conread position: 66-450
Cow position: chr18:45104816-45104421 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 267
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 24, 111

Conread position: 66-495
Cow position: chr18:21574630-21575055 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 288
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 62, 33

Conread position: 75-336
Cow position: chr18:37334754-37335016 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 179
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 113, 40

Conread position: 79-503
Cow position: chr18:35797265-35797696 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 93

Conread position: 95-500
Cow position: chr18:51298140-51298553 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 125

Conread position: 96-485
Cow position: chr18:56172359-56171954 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 266
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 92, 222

Conread position: 110-485
Cow position: chr18:19273424-19273036 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 261
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 120, 37

Conread position: 129-397
Cow position: chr18:50566567-50566842 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 189
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 115, 19

Conread position: 129-428
Cow position: chr18:23652919-23652623 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 215
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 59, 39

Conread position: 132-425
Cow position: chr18:51412072-51412370 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 213
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 76, 10

Conread position: 134-503
Cow position: chr18:51587840-51587467 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 260
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 132, 37

Conread position: 135-490
Cow position: chr18:48549691-48550053 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 229
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 243

Conread position: 135-503
Cow position: chr18:10101190-10101564 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 35

Conread position: 135-503
Cow position: chr18:23424628-23424995 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 97

Conread position: 135-503
Cow position: chr18:39503985-39503624 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 262
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 52, 162

Conread position: 135-503
Cow position: chr18:50700365-50700761 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 275
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 36, 371

Conread position: 136-468
Cow position: chr18:4515728-4516071 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 251

Conread position: 136-495
Cow position: chr18:16726350-16726717 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 8

Conread position: 136-503
Cow position: chr18:33843361-33843008 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 264
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 38, 118

Conread position: 140-503
Cow position: chr18:34325257-34324878 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 9

Conread position: 141-315
Cow position: chr18:21067646-21067828 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 45, 0

Conread position: 142-426
Cow position: chr18:51272033-51271757 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 211
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 46, 112

Conread position: 142-486
Cow position: chr18:25970925-25970575 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 166

Conread position: 143-503
Cow position: chr18:26335108-26334729 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 267
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 45, 193

Conread position: 144-427
Cow position: chr18:36477907-36478199 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 207
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 87, 33

Conread position: 144-491
Cow position: chr18:19387289-19387637 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 112

Conread position: 145-293
Cow position: chr18:24047958-24048108 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 109
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 145-491
Cow position: chr18:21175890-21176252 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 232

Conread position: 146-495
Cow position: chr18:38344515-38344875 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 248
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 98, 22

Conread position: 150-503
Cow position: chr18:42060791-42061152 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 155

Conread position: 151-491
Cow position: chr18:47525122-47525474 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 236
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 35, 73

Conread position: 151-501
Cow position: chr18:38794147-38793812 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 246
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 116, 26

Conread position: 153-433
Cow position: chr18:21203541-21203267 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 202
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 37, 170

Conread position: 155-503
Cow position: chr18:32773599-32773955 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 255
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 33, 45

Conread position: 156-484
Cow position: chr18:22434208-22433873 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 217
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 19, 82

Conread position: 168-426
Cow position: chr18:329540-329278 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 178
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 20, 50

Conread position: 174-502
Cow position: chr18:23360368-23360704 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 245
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 14, 215

Conread position: 176-503
Cow position: chr18:22411876-22411534 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 241
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 12, 152

Conread position: 181-503
Cow position: chr18:36649719-36650020 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 225
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 80, 117

Conread position: 195-503
Cow position: chr18:6157683-6157990 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 212
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 123, 71

Conread position: 200-503
Cow position: chr18:24856079-24855767 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 214
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 62, 112

Conread position: 201-500
Cow position: chr18:44493704-44493412 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 210
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 70, 52

Conread position: 202-437
Cow position: chr18:219100-219346 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 54, 152

Conread position: 204-495
Cow position: chr18:23715119-23714814 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 219
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 40, 0

Conread position: 207-470
Cow position: chr18:36123306-36123578 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 33, 174

Conread position: 207-503
Cow position: chr18:306291-305992 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 200
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 37, 107

Conread position: 212-503
Cow position: chr18:15831799-15831520 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 210
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 113, 5

Conread position: 219-495
Cow position: chr18:35766973-35767238 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 197
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 37, 128

Conread position: 221-503
Cow position: chr18:41072788-41073062 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 209
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 23, 106

Conread position: 238-402
Cow position: chr18:35749173-35749007 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 25, 103

Conread position: 242-503
Cow position: chr18:3780253-3780509 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 192
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 26, 17

Conread position: 259-469
Cow position: chr18:23487853-23488064 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 12, 120

Conread position: 259-503
Cow position: chr18:46321158-46320905 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 200

Conread position: 269-491
Cow position: chr18:30586380-30586160 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 150
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 191, 78

Conread position: 269-503
Cow position: chr18:5755821-5756055 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 181
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 45, 79

Conread position: 271-503
Cow position: chr18:32517519-32517276 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 16, 0

Conread position: 280-503
Cow position: chr18:21706330-21706107 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 165
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 19, 109

Conread position: 282-495
Cow position: chr18:32908901-32909116 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 37, 26

Conread position: 282-503
Cow position: chr18:18727700-18727493 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 202, 58

Conread position: 301-463
Cow position: chr18:14824900-14824740 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 25, 36

Conread position: 316-488
Cow position: chr18:34006840-34007012 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 96, 18

Conread position: 318-501
Cow position: chr18:213646-213462 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 51, 18

Conread position: 322-502
Cow position: chr18:37331629-37331453 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 143
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 14, 0

Conread position: 329-503
Cow position: chr18:38126549-38126373 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 85, 155

Conread position: 337-502
Cow position: chr18:11362161-11362325 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 36, 0

Conread position: 337-503
Cow position: chr18:1190811-1190645 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 32, 22

Conread position: 337-503
Cow position: chr18:16448465-16448620 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 337-503
Cow position: chr18:20423065-20422903 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 15, 0

Conread position: 349-495
Cow position: chr18:44400369-44400515 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 18, 30

Conread position: 363-503
Cow position: chr18:4803431-4803293 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 370-503
Cow position: chr18:19850781-19850649 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 371-503
Cow position: chr18:26372861-26372997 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 383-503
Cow position: chr18:30566602-30566483 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 35, 0

Conread position: 404-501
Cow position: chr18:24221548-24221645 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 420-503
Cow position: chr18:21095110-21095027 (view UCSC Genome Browser custom track)
Alignm length: 84
Alignm identity: 75
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.