Cow genome map

Conread name: rpfco0129_n4.y1

Conread position: 3-482
Cow position: chr19:3084611-3084128 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 41

Conread position: 3-501
Cow position: chr19:2771422-2770920 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 67

Conread position: 3-503
Cow position: chr19:31826691-31827189 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 67

Conread position: 3-503
Cow position: chr19:48478554-48479076 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 68

Conread position: 4-431
Cow position: chr19:15437700-15438123 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 64

Conread position: 4-503
Cow position: chr19:24688879-24689380 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 66

Conread position: 5-292
Cow position: chr19:24358634-24358344 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 55, 45

Conread position: 5-426
Cow position: chr19:2734046-2734467 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 18

Conread position: 6-439
Cow position: chr19:33280970-33281388 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 63

Conread position: 6-458
Cow position: chr19:31825432-31824960 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 63

Conread position: 6-477
Cow position: chr19:42647467-42647002 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 67

Conread position: 6-502
Cow position: chr19:7029531-7030017 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 346
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 246, 33

Conread position: 6-503
Cow position: chr19:2821171-2821681 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 162

Conread position: 6-503
Cow position: chr19:39876922-39876432 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 63

Conread position: 6-503
Cow position: chr19:53737931-53738433 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 63

Conread position: 8-503
Cow position: chr19:21285503-21284982 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 61

Conread position: 8-503
Cow position: chr19:35782518-35782043 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 30

Conread position: 13-482
Cow position: chr19:30746002-30746486 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 56

Conread position: 13-491
Cow position: chr19:730129-729661 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 8

Conread position: 13-491
Cow position: chr19:25711740-25711238 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 56

Conread position: 14-377
Cow position: chr19:37562403-37562035 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 267
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 78, 36

Conread position: 14-445
Cow position: chr19:36721936-36722352 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 284
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 242, 55

Conread position: 14-478
Cow position: chr19:6688404-6687929 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 55

Conread position: 14-480
Cow position: chr19:51401409-51400938 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 54

Conread position: 14-501
Cow position: chr19:36977314-36976815 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 55

Conread position: 22-428
Cow position: chr19:47727959-47727554 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 47

Conread position: 22-491
Cow position: chr19:39576960-39576481 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 46

Conread position: 27-427
Cow position: chr19:2260517-2260111 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 41

Conread position: 28-440
Cow position: chr19:18788486-18788073 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 42

Conread position: 57-502
Cow position: chr19:19673063-19673501 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 12

Conread position: 66-479
Cow position: chr19:56063776-56063354 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 282
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 52, 45

Conread position: 88-435
Cow position: chr19:28921506-28921853 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 6

Conread position: 88-491
Cow position: chr19:31594973-31595388 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 204

Conread position: 88-503
Cow position: chr19:36461854-36461429 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 82

Conread position: 93-315
Cow position: chr19:33621991-33622215 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 81, 47

Conread position: 99-503
Cow position: chr19:9704145-9703742 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 155

Conread position: 113-317
Cow position: chr19:30925616-30925413 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 75, 37

Conread position: 120-446
Cow position: chr19:47118790-47118459 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 241
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 68, 28

Conread position: 124-426
Cow position: chr19:20622373-20622671 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 199
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 183, 5

Conread position: 124-496
Cow position: chr19:33306014-33306393 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 261
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 17, 11

Conread position: 129-503
Cow position: chr19:55236208-55236584 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 109

Conread position: 134-491
Cow position: chr19:19919737-19919375 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 239
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 55, 29

Conread position: 135-427
Cow position: chr19:40449753-40450037 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 206
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 51, 33

Conread position: 136-413
Cow position: chr19:18242699-18242419 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 191
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 52, 139

Conread position: 136-483
Cow position: chr19:43733484-43733812 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 248
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 51, 89

Conread position: 136-503
Cow position: chr19:35064462-35064092 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 45

Conread position: 140-503
Cow position: chr19:19661768-19662143 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 166

Conread position: 142-482
Cow position: chr19:33882429-33882106 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 247
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 46, 26

Conread position: 142-486
Cow position: chr19:13316673-13316338 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 238
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 102, 26

Conread position: 142-491
Cow position: chr19:19924868-19924518 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 43

Conread position: 142-495
Cow position: chr19:5648923-5648573 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 183

Conread position: 143-491
Cow position: chr19:1664465-1664103 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 234
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 45, 171

Conread position: 145-317
Cow position: chr19:38638070-38637897 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 41, 113

Conread position: 148-494
Cow position: chr19:2342210-2342569 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 244

Conread position: 149-395
Cow position: chr19:56018788-56018536 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 181
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 39, 25

Conread position: 152-503
Cow position: chr19:904721-905063 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 256
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 28, 16

Conread position: 154-482
Cow position: chr19:33685836-33686161 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 224
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 20, 45

Conread position: 155-503
Cow position: chr19:54225557-54225210 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 65

Conread position: 157-490
Cow position: chr19:55589975-55590317 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 229
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 14, 170

Conread position: 160-467
Cow position: chr19:36478641-36478958 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 211
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 28, 133

Conread position: 160-503
Cow position: chr19:6881132-6880777 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 259
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 71, 235

Conread position: 166-482
Cow position: chr19:30052248-30051915 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 228
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 22, 99

Conread position: 168-426
Cow position: chr19:32450832-32451102 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 187
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 182

Conread position: 168-503
Cow position: chr19:31381243-31380908 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 221

Conread position: 169-412
Cow position: chr19:32989635-32989393 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 174
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 62, 22

Conread position: 170-478
Cow position: chr19:44489848-44490168 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 38

Conread position: 170-502
Cow position: chr19:22863906-22863571 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 173

Conread position: 172-447
Cow position: chr19:44366785-44367065 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 207
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 16, 120

Conread position: 172-503
Cow position: chr19:1713385-1713042 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 318

Conread position: 185-467
Cow position: chr19:47479853-47479564 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 210
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 43, 170

Conread position: 186-503
Cow position: chr19:35344709-35345027 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 225
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 11, 116

Conread position: 193-503
Cow position: chr19:43726925-43727233 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 218
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 24, 63

Conread position: 200-485
Cow position: chr19:34166151-34166449 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 198
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 56, 184

Conread position: 207-489
Cow position: chr19:31613905-31614191 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 209
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 36, 96

Conread position: 212-491
Cow position: chr19:15936637-15936919 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 7

Conread position: 222-503
Cow position: chr19:7839235-7838949 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 120

Conread position: 223-491
Cow position: chr19:10242394-10242665 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 195
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 21, 91

Conread position: 229-503
Cow position: chr19:33260845-33261120 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 208
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 33, 8

Conread position: 231-503
Cow position: chr19:9099977-9100246 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 202
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 13, 95

Conread position: 234-503
Cow position: chr19:22168339-22168607 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 195
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 32, 134

Conread position: 236-502
Cow position: chr19:25271593-25271321 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 144

Conread position: 238-482
Cow position: chr19:51536392-51536637 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 174
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 26, 82

Conread position: 239-491
Cow position: chr19:1402981-1402724 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 192
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 28, 199

Conread position: 242-500
Cow position: chr19:7404546-7404280 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 188
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 26, 14

Conread position: 255-425
Cow position: chr19:23327935-23327770 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 13, 5

Conread position: 255-503
Cow position: chr19:4825127-4824883 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 5

Conread position: 269-469
Cow position: chr19:42273986-42273785 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 62, 93

Conread position: 283-495
Cow position: chr19:16110317-16110096 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 31, 15

Conread position: 288-494
Cow position: chr19:6815001-6814795 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 45, 199

Conread position: 290-503
Cow position: chr19:28842491-28842261 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 291-503
Cow position: chr19:11637044-11636843 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 42, 76

Conread position: 292-503
Cow position: chr19:6735348-6735127 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 22, 85

Conread position: 307-487
Cow position: chr19:42504878-42504703 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 140
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 32, 26

Conread position: 312-503
Cow position: chr19:51800657-51800477 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 111, 24

Conread position: 327-503
Cow position: chr19:31984730-31984549 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 101, 0

Conread position: 330-498
Cow position: chr19:10207533-10207703 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 94, 42

Conread position: 332-500
Cow position: chr19:39250190-39250359 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 13, 0

Conread position: 334-490
Cow position: chr19:24721605-24721768 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 78, 38

Conread position: 337-502
Cow position: chr19:31126726-31126895 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 85, 0

Conread position: 342-503
Cow position: chr19:952629-952788 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 130
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 30, 0

Conread position: 343-503
Cow position: chr19:38871003-38871167 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 56, 38

Conread position: 366-503
Cow position: chr19:36318267-36318404 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 369-501
Cow position: chr19:21091059-21091191 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position: chr19:2280662-2280546 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 96, 0

Conread position: 395-503
Cow position: chr19:14254741-14254632 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 405-503
Cow position: chr19:11147621-11147525 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 87
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 37, 0

Show alignments to all cow chromosomes.