Cow genome map

Conread name: rpfco0129_n4.y1

Conread position: 3-482
Cow position:
Alignm length: 495
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 41

Conread position: 3-501
Cow position:
Alignm length: 513
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 67

Conread position: 3-503
Cow position:
Alignm length: 514
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 67

Conread position: 3-503
Cow position:
Alignm length: 524
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 68

Conread position: 4-431
Cow position:
Alignm length: 432
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 64

Conread position: 4-503
Cow position:
Alignm length: 515
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 66

Conread position: 5-292
Cow position:
Alignm length: 293
Alignm identity: 202
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 55, 45

Conread position: 5-426
Cow position:
Alignm length: 434
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 18

Conread position: 6-439
Cow position:
Alignm length: 436
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 63

Conread position: 6-458
Cow position:
Alignm length: 478
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 63

Conread position: 6-477
Cow position:
Alignm length: 482
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 67

Conread position: 6-502
Cow position:
Alignm length: 513
Alignm identity: 346
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 246, 33

Conread position: 6-503
Cow position:
Alignm length: 513
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 162

Conread position: 6-503
Cow position:
Alignm length: 503
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 63

Conread position: 6-503
Cow position:
Alignm length: 509
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 63

Conread position: 8-503
Cow position:
Alignm length: 529
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 61

Conread position: 8-503
Cow position:
Alignm length: 508
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 30

Conread position: 13-482
Cow position:
Alignm length: 489
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 56

Conread position: 13-491
Cow position:
Alignm length: 487
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 8

Conread position: 13-491
Cow position:
Alignm length: 510
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 56

Conread position: 14-377
Cow position:
Alignm length: 383
Alignm identity: 267
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 78, 36

Conread position: 14-445
Cow position:
Alignm length: 441
Alignm identity: 284
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 242, 55

Conread position: 14-478
Cow position:
Alignm length: 485
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 55

Conread position: 14-480
Cow position:
Alignm length: 479
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 54

Conread position: 14-501
Cow position:
Alignm length: 507
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 55

Conread position: 22-428
Cow position:
Alignm length: 414
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 47

Conread position: 22-491
Cow position:
Alignm length: 486
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 46

Conread position: 27-427
Cow position:
Alignm length: 416
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 41

Conread position: 28-440
Cow position:
Alignm length: 424
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 42

Conread position: 57-502
Cow position:
Alignm length: 455
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 12

Conread position: 66-479
Cow position:
Alignm length: 432
Alignm identity: 282
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 52, 45

Conread position: 88-435
Cow position:
Alignm length: 357
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 6

Conread position: 88-491
Cow position:
Alignm length: 420
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 204

Conread position: 88-503
Cow position:
Alignm length: 430
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 82

Conread position: 93-315
Cow position:
Alignm length: 232
Alignm identity: 171
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 81, 47

Conread position: 99-503
Cow position:
Alignm length: 411
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 155

Conread position: 113-317
Cow position:
Alignm length: 211
Alignm identity: 151
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 75, 37

Conread position: 120-446
Cow position:
Alignm length: 340
Alignm identity: 241
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 68, 28

Conread position: 124-426
Cow position:
Alignm length: 306
Alignm identity: 199
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 183, 5

Conread position: 124-496
Cow position:
Alignm length: 388
Alignm identity: 261
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 17, 11

Conread position: 129-503
Cow position:
Alignm length: 381
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 109

Conread position: 134-491
Cow position:
Alignm length: 373
Alignm identity: 239
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 55, 29

Conread position: 135-427
Cow position:
Alignm length: 300
Alignm identity: 206
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 51, 33

Conread position: 136-413
Cow position:
Alignm length: 283
Alignm identity: 191
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 52, 139

Conread position: 136-483
Cow position:
Alignm length: 351
Alignm identity: 248
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 51, 89

Conread position: 136-503
Cow position:
Alignm length: 380
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 45

Conread position: 140-503
Cow position:
Alignm length: 378
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 166

Conread position: 142-482
Cow position:
Alignm length: 347
Alignm identity: 247
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 46, 26

Conread position: 142-486
Cow position:
Alignm length: 356
Alignm identity: 238
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 102, 26

Conread position: 142-491
Cow position:
Alignm length: 362
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 43

Conread position: 142-495
Cow position:
Alignm length: 364
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 183

Conread position: 143-491
Cow position:
Alignm length: 366
Alignm identity: 234
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 45, 171

Conread position: 145-317
Cow position:
Alignm length: 177
Alignm identity: 129
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 41, 113

Conread position: 148-494
Cow position:
Alignm length: 361
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 244

Conread position: 149-395
Cow position:
Alignm length: 257
Alignm identity: 181
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 39, 25

Conread position: 152-503
Cow position:
Alignm length: 364
Alignm identity: 256
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 28, 16

Conread position: 154-482
Cow position:
Alignm length: 341
Alignm identity: 224
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 20, 45

Conread position: 155-503
Cow position:
Alignm length: 354
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 65

Conread position: 157-490
Cow position:
Alignm length: 351
Alignm identity: 229
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 14, 170

Conread position: 160-467
Cow position:
Alignm length: 319
Alignm identity: 211
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 28, 133

Conread position: 160-503
Cow position:
Alignm length: 365
Alignm identity: 259
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 71, 235

Conread position: 166-482
Cow position:
Alignm length: 339
Alignm identity: 228
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 22, 99

Conread position: 168-426
Cow position:
Alignm length: 274
Alignm identity: 187
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 182

Conread position: 168-503
Cow position:
Alignm length: 347
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 221

Conread position: 169-412
Cow position:
Alignm length: 247
Alignm identity: 174
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 62, 22

Conread position: 170-478
Cow position:
Alignm length: 323
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 38

Conread position: 170-502
Cow position:
Alignm length: 345
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 173

Conread position: 172-447
Cow position:
Alignm length: 286
Alignm identity: 207
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 16, 120

Conread position: 172-503
Cow position:
Alignm length: 347
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 318

Conread position: 185-467
Cow position:
Alignm length: 298
Alignm identity: 210
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 43, 170

Conread position: 186-503
Cow position:
Alignm length: 330
Alignm identity: 225
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 11, 116

Conread position: 193-503
Cow position:
Alignm length: 315
Alignm identity: 218
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 24, 63

Conread position: 200-485
Cow position:
Alignm length: 300
Alignm identity: 198
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 56, 184

Conread position: 207-489
Cow position:
Alignm length: 292
Alignm identity: 209
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 36, 96

Conread position: 212-491
Cow position:
Alignm length: 290
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 7

Conread position: 222-503
Cow position:
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 120

Conread position: 223-491
Cow position:
Alignm length: 277
Alignm identity: 195
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 21, 91

Conread position: 229-503
Cow position:
Alignm length: 285
Alignm identity: 208
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 33, 8

Conread position: 231-503
Cow position:
Alignm length: 286
Alignm identity: 202
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 13, 95

Conread position: 234-503
Cow position:
Alignm length: 278
Alignm identity: 195
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 32, 134

Conread position: 236-502
Cow position:
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 144

Conread position: 238-482
Cow position:
Alignm length: 254
Alignm identity: 174
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 26, 82

Conread position: 239-491
Cow position:
Alignm length: 259
Alignm identity: 192
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 28, 199

Conread position: 242-500
Cow position:
Alignm length: 272
Alignm identity: 188
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 26, 14

Conread position: 255-425
Cow position:
Alignm length: 173
Alignm identity: 128
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 13, 5

Conread position: 255-503
Cow position:
Alignm length: 256
Alignm identity: 183
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 5

Conread position: 269-469
Cow position:
Alignm length: 209
Alignm identity: 147
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 62, 93

Conread position: 283-495
Cow position:
Alignm length: 227
Alignm identity: 162
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 31, 15

Conread position: 288-494
Cow position:
Alignm length: 209
Alignm identity: 146
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 45, 199

Conread position: 290-503
Cow position:
Alignm length: 231
Alignm identity: 161
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 291-503
Cow position:
Alignm length: 216
Alignm identity: 161
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 42, 76

Conread position: 292-503
Cow position:
Alignm length: 223
Alignm identity: 161
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 22, 85

Conread position: 307-487
Cow position:
Alignm length: 184
Alignm identity: 140
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 32, 26

Conread position: 312-503
Cow position:
Alignm length: 196
Alignm identity: 143
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 111, 24

Conread position: 327-503
Cow position:
Alignm length: 182
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 101, 0

Conread position: 330-498
Cow position:
Alignm length: 173
Alignm identity: 128
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 94, 42

Conread position: 332-500
Cow position:
Alignm length: 170
Alignm identity: 125
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 13, 0

Conread position: 334-490
Cow position:
Alignm length: 165
Alignm identity: 121
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 78, 38

Conread position: 337-502
Cow position:
Alignm length: 170
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 85, 0

Conread position: 342-503
Cow position:
Alignm length: 162
Alignm identity: 130
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 30, 0

Conread position: 343-503
Cow position:
Alignm length: 166
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 56, 38

Conread position: 366-503
Cow position:
Alignm length: 138
Alignm identity: 107
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 369-501
Cow position:
Alignm length: 133
Alignm identity: 107
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 97
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 96, 0

Conread position: 395-503
Cow position:
Alignm length: 110
Alignm identity: 92
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 405-503
Cow position:
Alignm length: 99
Alignm identity: 87
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 37, 0

Show alignments to all cow chromosomes.