Cow genome map

Conread name: rpfco0129_n4.y1

Conread position: 3-407
Cow position: chr20:13955689-13956099 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 66

Conread position: 3-477
Cow position: chr20:38123527-38124014 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 69

Conread position: 5-491
Cow position: chr20:3599744-3599257 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 28

Conread position: 5-491
Cow position: chr20:17845600-17846100 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 64

Conread position: 6-413
Cow position: chr20:4895248-4894837 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 63

Conread position: 6-426
Cow position: chr20:6570979-6571407 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 67

Conread position: 6-438
Cow position: chr20:19352114-19351675 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 63

Conread position: 6-492
Cow position: chr20:18490840-18491300 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 63

Conread position: 6-503
Cow position: chr20:23833783-23834267 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 64

Conread position: 6-503
Cow position: chr20:26881274-26880746 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 64

Conread position: 8-344
Cow position: chr20:3891699-3892029 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 61

Conread position: 8-485
Cow position: chr20:5576408-5576910 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 62

Conread position: 8-490
Cow position: chr20:13821933-13821439 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 65

Conread position: 8-499
Cow position: chr20:26076737-26077231 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 61

Conread position: 9-482
Cow position: chr20:7110468-7109990 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 61

Conread position: 13-293
Cow position: chr20:14719085-14718802 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 173, 8

Conread position: 13-501
Cow position: chr20:32667644-32668121 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 56

Conread position: 14-485
Cow position: chr20:40781632-40782097 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 304
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 186, 55

Conread position: 14-491
Cow position: chr20:29844698-29845191 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 57

Conread position: 21-446
Cow position: chr20:16715066-16715487 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 296
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 167, 48

Conread position: 21-491
Cow position: chr20:33363176-33363659 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 319
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 32, 50

Conread position: 22-426
Cow position: chr20:33144891-33144482 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 287
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 10, 48

Conread position: 27-374
Cow position: chr20:15577223-15576863 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 46

Conread position: 32-301
Cow position: chr20:24398958-24398691 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 189
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 156, 28

Conread position: 45-319
Cow position: chr20:18399447-18399728 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 143, 24

Conread position: 67-423
Cow position: chr20:15761240-15760881 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 259
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 121, 71

Conread position: 75-476
Cow position: chr20:6240814-6240402 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 284
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 112, 140

Conread position: 89-446
Cow position: chr20:35958378-35958743 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 255
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 99, 74

Conread position: 90-427
Cow position: chr20:10034201-10033847 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 241
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 10, 59

Conread position: 96-495
Cow position: chr20:25686617-25686203 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 34

Conread position: 97-426
Cow position: chr20:13967522-13967185 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 234
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 33, 216

Conread position: 110-503
Cow position: chr20:35843359-35842973 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 16

Conread position: 112-503
Cow position: chr20:6903080-6903467 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 57

Conread position: 121-490
Cow position: chr20:10200102-10200485 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 257
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 53, 216

Conread position: 130-503
Cow position: chr20:20360001-20359629 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 269
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 58, 33

Conread position: 134-503
Cow position: chr20:14679392-14679770 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 107

Conread position: 135-426
Cow position: chr20:29805882-29805587 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 194
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 125, 28

Conread position: 135-446
Cow position: chr20:20557879-20557558 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 225
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 53, 258

Conread position: 135-482
Cow position: chr20:32578145-32577790 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 248
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 39, 84

Conread position: 135-486
Cow position: chr20:14572579-14572227 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 246
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 53, 13

Conread position: 135-503
Cow position: chr20:220393-220761 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 40

Conread position: 135-503
Cow position: chr20:17669957-17670336 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 202

Conread position: 136-426
Cow position: chr20:22704064-22704366 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 205
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 51, 215

Conread position: 136-495
Cow position: chr20:25823058-25823421 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 265
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 12, 53

Conread position: 140-426
Cow position: chr20:35009960-35009666 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 193
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 48, 21

Conread position: 140-494
Cow position: chr20:40511977-40511612 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 261
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 48, 28

Conread position: 142-329
Cow position: chr20:5025520-5025330 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 136
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 50, 129

Conread position: 142-425
Cow position: chr20:23505611-23505898 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 193
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 46, 26

Conread position: 142-450
Cow position: chr20:24869246-24868933 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 226
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 46, 153

Conread position: 142-503
Cow position: chr20:10759683-10759319 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 253
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 46, 80

Conread position: 143-495
Cow position: chr20:19265940-19266298 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 149

Conread position: 146-359
Cow position: chr20:9379195-9379417 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 165

Conread position: 146-426
Cow position: chr20:14879572-14879860 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 196
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 28, 190

Conread position: 147-477
Cow position: chr20:4204079-4204412 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 242
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 41, 200

Conread position: 147-503
Cow position: chr20:7182889-7182534 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 222

Conread position: 148-494
Cow position: chr20:32862204-32861857 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 246
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 43, 54

Conread position: 149-427
Cow position: chr20:7600988-7600706 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 195
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 39, 24

Conread position: 150-503
Cow position: chr20:27001184-27001539 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 18

Conread position: 157-503
Cow position: chr20:33178729-33178365 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 160-494
Cow position: chr20:15074032-15073693 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 242
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 27, 112

Conread position: 166-447
Cow position: chr20:2802273-2801998 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 203
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 65, 73

Conread position: 168-490
Cow position: chr20:7539419-7539082 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 230
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 18, 205

Conread position: 168-491
Cow position: chr20:28067618-28067283 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 236
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 18, 145

Conread position: 168-500
Cow position: chr20:34107924-34108255 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 235
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 20, 37

Conread position: 170-503
Cow position: chr20:29308695-29308359 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 249
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 16, 199

Conread position: 176-461
Cow position: chr20:14980698-14980402 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 199
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 68, 170

Conread position: 177-503
Cow position: chr20:25274462-25274140 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 245
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 11, 84

Conread position: 203-408
Cow position: chr20:11355062-11355273 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 60, 176

Conread position: 206-477
Cow position: chr20:24234008-24234281 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 12

Conread position: 213-495
Cow position: chr20:38858554-38858288 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 203
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 55, 47

Conread position: 216-503
Cow position: chr20:8261764-8262069 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 132

Conread position: 220-503
Cow position: chr20:19340006-19339728 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 212
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 48, 33

Conread position: 236-503
Cow position: chr20:34178596-34178325 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 207
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 24, 20

Conread position: 241-503
Cow position: chr20:23234917-23235183 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 202
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 15, 139

Conread position: 250-427
Cow position: chr20:12430903-12430724 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 12, 62

Conread position: 258-503
Cow position: chr20:24833996-24834242 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 16, 51

Conread position: 269-495
Cow position: chr20:13494427-13494654 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 158
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 51, 107

Conread position: 273-448
Cow position: chr20:26315672-26315503 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 274-503
Cow position: chr20:5763364-5763141 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 168
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 93, 14

Conread position: 275-491
Cow position: chr20:37028734-37028964 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 19, 111

Conread position: 279-503
Cow position: chr20:39656174-39656395 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 32, 67

Conread position: 286-503
Cow position: chr20:17397325-17397111 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 169
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 47, 89

Conread position: 298-501
Cow position: chr20:30855810-30855609 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 35, 76

Conread position: 322-494
Cow position: chr20:26750233-26750069 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 140
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 14, 0

Conread position: 338-502
Cow position: chr20:14363151-14362996 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 338-503
Cow position: chr20:19865240-19865400 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 134
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 31, 0

Conread position: 362-501
Cow position: chr20:2456041-2456179 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 364-495
Cow position: chr20:4934059-4933925 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 65, 31

Conread position: 373-503
Cow position: chr20:35924762-35924633 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 109, 0

Conread position: 381-503
Cow position: chr20:21236683-21236809 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 384-503
Cow position: chr20:13609035-13608916 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 398-503
Cow position: chr20:23604687-23604582 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 85
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 400-498
Cow position: chr20:32587408-32587505 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 402-502
Cow position: chr20:35683354-35683254 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 87
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.