Cow genome map

Conread name: rpfco0129_n4.y1

Conread position: 3-361
Cow position: chr23:3745215-3745577 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 255
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 7, 61

Conread position: 3-495
Cow position: chr23:29271706-29272219 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 67

Conread position: 4-487
Cow position: chr23:36146841-36146374 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 65

Conread position: 4-503
Cow position: chr23:11434664-11434148 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 66

Conread position: 5-486
Cow position: chr23:25865074-25864600 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 64

Conread position: 5-502
Cow position: chr23:19636658-19636150 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 64

Conread position: 6-380
Cow position: chr23:11564744-11564359 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 276
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 120, 63

Conread position: 6-380
Cow position: chr23:23470553-23470923 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 68

Conread position: 6-503
Cow position: chr23:9641810-9641321 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 63

Conread position: 6-503
Cow position: chr23:9711995-9711483 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 31

Conread position: 6-503
Cow position: chr23:20586106-20585589 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 63

Conread position: 6-503
Cow position: chr23:26066707-26067205 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 340
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 109, 63

Conread position: 8-427
Cow position: chr23:644925-645360 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 303
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 39, 24

Conread position: 8-427
Cow position: chr23:16610202-16609774 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 61

Conread position: 8-477
Cow position: chr23:792414-791945 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 326
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 69, 62

Conread position: 8-490
Cow position: chr23:40861968-40862445 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 35

Conread position: 8-500
Cow position: chr23:40526363-40525874 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 43

Conread position: 9-291
Cow position: chr23:28111542-28111825 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 192
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 130, 59

Conread position: 9-426
Cow position: chr23:1670531-1670933 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 289
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 179, 12

Conread position: 10-501
Cow position: chr23:14126174-14126674 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 30

Conread position: 13-486
Cow position: chr23:14164786-14164298 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 10

Conread position: 14-485
Cow position: chr23:11128847-11129329 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 56

Conread position: 29-477
Cow position: chr23:16058228-16058677 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 40

Conread position: 31-491
Cow position: chr23:38455553-38455077 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 25

Conread position: 35-503
Cow position: chr23:5389339-5389811 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 38

Conread position: 38-501
Cow position: chr23:31607534-31607044 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 31

Conread position: 57-356
Cow position: chr23:29471458-29471162 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 199
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 131, 42

Conread position: 66-491
Cow position: chr23:6223675-6224074 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 275
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 122, 36

Conread position: 78-485
Cow position: chr23:20781501-20781903 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 281
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 72, 51

Conread position: 88-502
Cow position: chr23:20752700-20753118 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 80

Conread position: 93-503
Cow position: chr23:22660874-22660477 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 33

Conread position: 102-427
Cow position: chr23:17876000-17875684 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 221
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 24, 62

Conread position: 109-503
Cow position: chr23:20171287-20171693 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 30

Conread position: 111-486
Cow position: chr23:4726512-4726888 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 268
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 145, 35

Conread position: 115-491
Cow position: chr23:35363057-35362678 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 34

Conread position: 135-503
Cow position: chr23:16237526-16237144 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 19

Conread position: 136-503
Cow position: chr23:37224333-37223961 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 214

Conread position: 141-439
Cow position: chr23:10424601-10424877 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 211
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 20, 86

Conread position: 141-470
Cow position: chr23:7550909-7550575 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 239
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 46, 116

Conread position: 142-433
Cow position: chr23:9652726-9652447 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 203
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 46, 66

Conread position: 142-446
Cow position: chr23:26795163-26794858 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 204
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 44, 127

Conread position: 142-503
Cow position: chr23:22588529-22588167 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 230

Conread position: 142-503
Cow position: chr23:28700743-28701099 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 255
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 46, 164

Conread position: 143-446
Cow position: chr23:20057125-20056812 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 215
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 43, 122

Conread position: 144-503
Cow position: chr23:1203976-1203615 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 250
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 44, 19

Conread position: 144-503
Cow position: chr23:17092745-17092385 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 152

Conread position: 146-491
Cow position: chr23:26632545-26632906 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 252
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 42, 22

Conread position: 147-491
Cow position: chr23:41590163-41589822 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 34

Conread position: 148-503
Cow position: chr23:17000448-17000817 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 262
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 63, 25

Conread position: 150-495
Cow position: chr23:21866506-21866845 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 248
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 38, 55

Conread position: 153-503
Cow position: chr23:15872949-15872580 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 252
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 33, 227

Conread position: 157-503
Cow position: chr23:13359576-13359938 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 245
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 30, 11

Conread position: 168-486
Cow position: chr23:5603504-5603188 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 234
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 20, 66

Conread position: 168-491
Cow position: chr23:15742866-15743191 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 228
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 20, 58

Conread position: 168-503
Cow position: chr23:30210577-30210236 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 51

Conread position: 170-494
Cow position: chr23:40891130-40891466 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 95

Conread position: 170-503
Cow position: chr23:30307677-30308020 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 252
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 18, 30

Conread position: 186-427
Cow position: chr23:32662361-32662612 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 56, 110

Conread position: 186-481
Cow position: chr23:21659723-21660036 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 225
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 67, 230

Conread position: 186-483
Cow position: chr23:5723329-5723630 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 207
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 70, 128

Conread position: 187-503
Cow position: chr23:28895181-28894843 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 242

Conread position: 202-495
Cow position: chr23:35177120-35177423 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 208
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 35, 100

Conread position: 203-448
Cow position: chr23:24516056-24515832 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 184
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 33, 0

Conread position: 207-503
Cow position: chr23:30773872-30773587 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 222
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 30, 167

Conread position: 216-446
Cow position: chr23:27290966-27290726 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 175
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 25, 129

Conread position: 216-494
Cow position: chr23:26050865-26051142 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 196
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 105, 42

Conread position: 217-503
Cow position: chr23:40651645-40651360 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 209
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 45, 83

Conread position: 218-503
Cow position: chr23:16793415-16793694 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 215
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 39, 95

Conread position: 236-503
Cow position: chr23:16072484-16072232 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 194
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 26, 57

Conread position: 244-467
Cow position: chr23:6031725-6031952 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 12, 49

Conread position: 269-502
Cow position: chr23:29393324-29393543 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 174
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 219, 35

Conread position: 271-503
Cow position: chr23:1677277-1677507 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 163
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 16, 31

Conread position: 281-503
Cow position: chr23:23192258-23192043 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 164
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 33, 0

Conread position: 286-495
Cow position: chr23:14543328-14543120 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 145
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 54, 0

Conread position: 291-502
Cow position: chr23:18326702-18326915 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 44, 91

Conread position: 324-486
Cow position: chr23:22418931-22419078 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 324-495
Cow position: chr23:26217497-26217664 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 331-503
Cow position: chr23:35155312-35155486 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 83, 49

Conread position: 332-488
Cow position: chr23:17477305-17477159 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 337-488
Cow position: chr23:35498081-35497930 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 337-495
Cow position: chr23:14840569-14840408 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 40, 59

Conread position: 337-502
Cow position: chr23:21276078-21275906 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 81, 59

Conread position: 340-503
Cow position: chr23:7611216-7611374 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 15, 0

Conread position: 342-503
Cow position: chr23:36082530-36082697 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 63, 17

Conread position: 349-503
Cow position: chr23:1717597-1717437 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 357-503
Cow position: chr23:18495764-18495908 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 362-503
Cow position: chr23:13319912-13320049 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 364-501
Cow position: chr23:29981180-29981315 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 376-484
Cow position: chr23:23974900-23975003 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 92
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 73, 0

Conread position: 376-503
Cow position: chr23:11564392-11564267 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 20, 105

Show alignments to all cow chromosomes.