Cow genome map


           Conread name:
           rpfco0129_n4.y1
        

               Conread position:
               3-361
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               255
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               7, 61
               

               Conread position:
               3-495
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 67
               

               Conread position:
               4-487
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 65
               

               Conread position:
               4-503
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 66
               

               Conread position:
               5-486
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 64
               

               Conread position:
               5-502
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 64
               

               Conread position:
               6-380
               

               Cow position:
               
               

               Alignm length:
               397
               

               Alignm identity:
               276
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               120, 63
               

               Conread position:
               6-380
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 68
               

               Conread position:
               6-503
               

               Cow position:
               
               

               Alignm length:
               511
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 63
               

               Conread position:
               6-503
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 31
               

               Conread position:
               6-503
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 63
               

               Conread position:
               6-503
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               340
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               109, 63
               

               Conread position:
               8-427
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               303
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               39, 24
               

               Conread position:
               8-427
               

               Cow position:
               
               

               Alignm length:
               432
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 61
               

               Conread position:
               8-477
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               326
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               69, 62
               

               Conread position:
               8-490
               

               Cow position:
               
               

               Alignm length:
               501
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 35
               

               Conread position:
               8-500
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 43
               

               Conread position:
               9-291
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               192
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               130, 59
               

               Conread position:
               9-426
               

               Cow position:
               
               

               Alignm length:
               423
               

               Alignm identity:
               289
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               179, 12
               

               Conread position:
               10-501
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 30
               

               Conread position:
               13-486
               

               Cow position:
               
               

               Alignm length:
               498
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 10
               

               Conread position:
               14-485
               

               Cow position:
               
               

               Alignm length:
               489
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 56
               

               Conread position:
               29-477
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 40
               

               Conread position:
               31-491
               

               Cow position:
               
               

               Alignm length:
               481
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 25
               

               Conread position:
               35-503
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 38
               

               Conread position:
               38-501
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 31
               

               Conread position:
               57-356
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               131, 42
               

               Conread position:
               66-491
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               275
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               122, 36
               

               Conread position:
               78-485
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               281
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               72, 51
               

               Conread position:
               88-502
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 80
               

               Conread position:
               93-503
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 33
               

               Conread position:
               102-427
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               221
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               24, 62
               

               Conread position:
               109-503
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 30
               

               Conread position:
               111-486
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               268
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               145, 35
               

               Conread position:
               115-491
               

               Cow position:
               
               

               Alignm length:
               388
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 34
               

               Conread position:
               135-503
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 19
               

               Conread position:
               136-503
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 214
               

               Conread position:
               141-439
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               211
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               20, 86
               

               Conread position:
               141-470
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               239
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               46, 116
               

               Conread position:
               142-433
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               46, 66
               

               Conread position:
               142-446
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               204
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               44, 127
               

               Conread position:
               142-503
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 230
               

               Conread position:
               142-503
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               255
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               46, 164
               

               Conread position:
               143-446
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               215
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               43, 122
               

               Conread position:
               144-503
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               44, 19
               

               Conread position:
               144-503
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 152
               

               Conread position:
               146-491
               

               Cow position:
               
               

               Alignm length:
               372
               

               Alignm identity:
               252
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               42, 22
               

               Conread position:
               147-491
               

               Cow position:
               
               

               Alignm length:
               351
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 34
               

               Conread position:
               148-503
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               262
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               63, 25
               

               Conread position:
               150-495
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               38, 55
               

               Conread position:
               153-503
               

               Cow position:
               
               

               Alignm length:
               372
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               33, 227
               

               Conread position:
               157-503
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               245
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               30, 11
               

               Conread position:
               168-486
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               20, 66
               

               Conread position:
               168-491
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               228
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               20, 58
               

               Conread position:
               168-503
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 51
               

               Conread position:
               170-494
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 95
               

               Conread position:
               170-503
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               252
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               18, 30
               

               Conread position:
               186-427
               

               Cow position:
               
               

               Alignm length:
               253
               

               Alignm identity:
               179
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               56, 110
               

               Conread position:
               186-481
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               67, 230
               

               Conread position:
               186-483
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               70, 128
               

               Conread position:
               187-503
               

               Cow position:
               
               

               Alignm length:
               340
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 242
               

               Conread position:
               202-495
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               208
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               35, 100
               

               Conread position:
               203-448
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               207-503
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               30, 167
               

               Conread position:
               216-446
               

               Cow position:
               
               

               Alignm length:
               248
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               25, 129
               

               Conread position:
               216-494
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               105, 42
               

               Conread position:
               217-503
               

               Cow position:
               
               

               Alignm length:
               300
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               45, 83
               

               Conread position:
               218-503
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               215
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               39, 95
               

               Conread position:
               236-503
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               26, 57
               

               Conread position:
               244-467
               

               Cow position:
               
               

               Alignm length:
               234
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               12, 49
               

               Conread position:
               269-502
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               219, 35
               

               Conread position:
               271-503
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               16, 31
               

               Conread position:
               281-503
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               164
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               286-495
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               291-502
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               44, 91
               

               Conread position:
               324-486
               

               Cow position:
               
               

               Alignm length:
               163
               

               Alignm identity:
               123
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               324-495
               

               Cow position:
               
               

               Alignm length:
               172
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               331-503
               

               Cow position:
               
               

               Alignm length:
               177
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               83, 49
               

               Conread position:
               332-488
               

               Cow position:
               
               

               Alignm length:
               157
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               337-488
               

               Cow position:
               
               

               Alignm length:
               152
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               337-495
               

               Cow position:
               
               

               Alignm length:
               163
               

               Alignm identity:
               117
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               40, 59
               

               Conread position:
               337-502
               

               Cow position:
               
               

               Alignm length:
               174
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               81, 59
               

               Conread position:
               340-503
               

               Cow position:
               
               

               Alignm length:
               164
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               342-503
               

               Cow position:
               
               

               Alignm length:
               169
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               63, 17
               

               Conread position:
               349-503
               

               Cow position:
               
               

               Alignm length:
               161
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               357-503
               

               Cow position:
               
               

               Alignm length:
               147
               

               Alignm identity:
               110
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               362-503
               

               Cow position:
               
               

               Alignm length:
               142
               

               Alignm identity:
               106
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               364-501
               

               Cow position:
               
               

               Alignm length:
               138
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               376-484
               

               Cow position:
               
               

               Alignm length:
               109
               

               Alignm identity:
               92
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               376-503
               

               Cow position:
               
               

               Alignm length:
               129
               

               Alignm identity:
               100
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               20, 105
               
Show alignments to all cow chromosomes.