Cow genome map
Conread name: | rpfco0129_n4.y1 |
Conread position: | 1-449 |
Cow position: | chr24:5849833-5849363 (view UCSC Genome Browser custom track) |
Alignm length: | 477 |
Alignm identity: | 342 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 69 |
Conread position: | 2-503 |
Cow position: | chr24:1272294-1271804 (view UCSC Genome Browser custom track) |
Alignm length: | 518 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 67 |
Conread position: | 3-490 |
Cow position: | chr24:17763688-17763190 (view UCSC Genome Browser custom track) |
Alignm length: | 512 |
Alignm identity: | 340 |
Alignm E-value: | 7.9874e-44 |
Alignm gaps (pig, cow): | 6, 68 |
Conread position: | 3-490 |
Cow position: | chr24:25229501-25228991 (view UCSC Genome Browser custom track) |
Alignm length: | 520 |
Alignm identity: | 342 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 9, 70 |
Conread position: | 3-503 |
Cow position: | chr24:25677609-25678109 (view UCSC Genome Browser custom track) |
Alignm length: | 518 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 6, 68 |
Conread position: | 5-503 |
Cow position: | chr24:39681449-39681937 (view UCSC Genome Browser custom track) |
Alignm length: | 506 |
Alignm identity: | 362 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 183, 64 |
Conread position: | 6-444 |
Cow position: | chr24:20862382-20861938 (view UCSC Genome Browser custom track) |
Alignm length: | 454 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 64 |
Conread position: | 6-480 |
Cow position: | chr24:32823213-32822708 (view UCSC Genome Browser custom track) |
Alignm length: | 512 |
Alignm identity: | 340 |
Alignm E-value: | 5e-39 |
Alignm gaps (pig, cow): | 84, 26 |
Conread position: | 6-501 |
Cow position: | chr24:30860208-30860719 (view UCSC Genome Browser custom track) |
Alignm length: | 517 |
Alignm identity: | 364 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 127, 63 |
Conread position: | 6-502 |
Cow position: | chr24:28335959-28335478 (view UCSC Genome Browser custom track) |
Alignm length: | 509 |
Alignm identity: | 350 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 158, 63 |
Conread position: | 7-380 |
Cow position: | chr24:37205293-37204917 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 48 |
Conread position: | 8-491 |
Cow position: | chr24:32759203-32758688 (view UCSC Genome Browser custom track) |
Alignm length: | 519 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 61 |
Conread position: | 8-501 |
Cow position: | chr24:17980801-17981268 (view UCSC Genome Browser custom track) |
Alignm length: | 498 |
Alignm identity: | 346 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 180, 43 |
Conread position: | 8-502 |
Cow position: | chr24:35568770-35569260 (view UCSC Genome Browser custom track) |
Alignm length: | 504 |
Alignm identity: | 359 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 62 |
Conread position: | 8-503 |
Cow position: | chr24:32158685-32158190 (view UCSC Genome Browser custom track) |
Alignm length: | 504 |
Alignm identity: | 361 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 248, 61 |
Conread position: | 9-503 |
Cow position: | chr24:14337314-14337814 (view UCSC Genome Browser custom track) |
Alignm length: | 507 |
Alignm identity: | 349 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 18 |
Conread position: | 13-376 |
Cow position: | chr24:38266773-38267146 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 57 |
Conread position: | 14-426 |
Cow position: | chr24:30484346-30483944 (view UCSC Genome Browser custom track) |
Alignm length: | 421 |
Alignm identity: | 283 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 31, 27 |
Conread position: | 14-486 |
Cow position: | chr24:3493484-3493954 (view UCSC Genome Browser custom track) |
Alignm length: | 484 |
Alignm identity: | 332 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 242, 29 |
Conread position: | 14-491 |
Cow position: | chr24:28690286-28690758 (view UCSC Genome Browser custom track) |
Alignm length: | 492 |
Alignm identity: | 337 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 7 |
Conread position: | 14-495 |
Cow position: | chr24:27683849-27683379 (view UCSC Genome Browser custom track) |
Alignm length: | 500 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 55 |
Conread position: | 14-500 |
Cow position: | chr24:29170564-29171044 (view UCSC Genome Browser custom track) |
Alignm length: | 501 |
Alignm identity: | 327 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 172, 55 |
Conread position: | 15-503 |
Cow position: | chr24:12264101-12263628 (view UCSC Genome Browser custom track) |
Alignm length: | 500 |
Alignm identity: | 325 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 222, 54 |
Conread position: | 16-486 |
Cow position: | chr24:17104973-17104500 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 24 |
Conread position: | 46-491 |
Cow position: | chr24:35150135-35150592 (view UCSC Genome Browser custom track) |
Alignm length: | 469 |
Alignm identity: | 297 |
Alignm E-value: | 8e-23 |
Alignm gaps (pig, cow): | 23, 136 |
Conread position: | 52-394 |
Cow position: | chr24:43733597-43733946 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 17 |
Conread position: | 75-486 |
Cow position: | chr24:29679663-29679243 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 89, 15 |
Conread position: | 76-442 |
Cow position: | chr24:34532772-34533135 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 252 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 117, 241 |
Conread position: | 77-491 |
Cow position: | chr24:19535589-19535183 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 272 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 182, 29 |
Conread position: | 78-503 |
Cow position: | chr24:39123514-39123928 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 302 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 127 |
Conread position: | 90-486 |
Cow position: | chr24:40091905-40091511 (view UCSC Genome Browser custom track) |
Alignm length: | 410 |
Alignm identity: | 302 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 25 |
Conread position: | 95-495 |
Cow position: | chr24:27054076-27054489 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 77 |
Conread position: | 129-305 |
Cow position: | chr24:36730202-36730384 (view UCSC Genome Browser custom track) |
Alignm length: | 183 |
Alignm identity: | 137 |
Alignm E-value: | 5e-29 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 129-491 |
Cow position: | chr24:43200573-43200200 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 255 |
Alignm E-value: | 6.00036e-42 |
Alignm gaps (pig, cow): | 7, 220 |
Conread position: | 135-503 |
Cow position: | chr24:7079499-7079870 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 265 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 107, 29 |
Conread position: | 135-503 |
Cow position: | chr24:34369298-34368921 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 109, 43 |
Conread position: | 136-503 |
Cow position: | chr24:36801112-36801461 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 183, 93 |
Conread position: | 137-402 |
Cow position: | chr24:21860511-21860242 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 184 |
Alignm E-value: | 6e-21 |
Alignm gaps (pig, cow): | 25, 42 |
Conread position: | 137-427 |
Cow position: | chr24:30900517-30900222 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 206 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 51, 20 |
Conread position: | 139-284 |
Cow position: | chr24:28060714-28060564 (view UCSC Genome Browser custom track) |
Alignm length: | 152 |
Alignm identity: | 115 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 47, 38 |
Conread position: | 140-427 |
Cow position: | chr24:35795027-35794730 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 202 |
Alignm E-value: | 5e-29 |
Alignm gaps (pig, cow): | 48, 178 |
Conread position: | 140-427 |
Cow position: | chr24:39955333-39955045 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 217 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 47, 175 |
Conread position: | 140-503 |
Cow position: | chr24:27633126-27633484 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 177 |
Conread position: | 140-503 |
Cow position: | chr24:28279357-28279710 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 34 |
Conread position: | 142-464 |
Cow position: | chr24:23685346-23685019 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 149 |
Conread position: | 142-503 |
Cow position: | chr24:1438552-1438184 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 239 |
Alignm E-value: | 5e-29 |
Alignm gaps (pig, cow): | 45, 122 |
Conread position: | 142-503 |
Cow position: | chr24:6508048-6507685 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 26 |
Conread position: | 142-503 |
Cow position: | chr24:42943407-42943034 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 252 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 26, 95 |
Conread position: | 143-503 |
Cow position: | chr24:14746353-14746734 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 266 |
Alignm E-value: | 4e-38 |
Alignm gaps (pig, cow): | 118, 38 |
Conread position: | 144-491 |
Cow position: | chr24:39350491-39350142 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 74 |
Conread position: | 144-503 |
Cow position: | chr24:24311218-24311587 (view UCSC Genome Browser custom track) |
Alignm length: | 374 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 24 |
Conread position: | 150-446 |
Cow position: | chr24:30545133-30544838 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 215 |
Alignm E-value: | 5e-29 |
Alignm gaps (pig, cow): | 36, 95 |
Conread position: | 150-503 |
Cow position: | chr24:31378477-31378836 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 199 |
Conread position: | 153-491 |
Cow position: | chr24:35529649-35529981 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 138 |
Conread position: | 154-427 |
Cow position: | chr24:16476134-16476411 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 200 |
Alignm E-value: | 6e-31 |
Alignm gaps (pig, cow): | 34, 14 |
Conread position: | 156-418 |
Cow position: | chr24:39258893-39259157 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 143 |
Conread position: | 168-495 |
Cow position: | chr24:32894153-32894469 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 225 |
Alignm E-value: | 3e-34 |
Alignm gaps (pig, cow): | 8, 31 |
Conread position: | 169-503 |
Cow position: | chr24:28349327-28349661 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 237 |
Alignm E-value: | 4e-37 |
Alignm gaps (pig, cow): | 19, 76 |
Conread position: | 174-503 |
Cow position: | chr24:23824670-23824336 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 237 |
Alignm E-value: | 9e-35 |
Alignm gaps (pig, cow): | 15, 112 |
Conread position: | 179-503 |
Cow position: | chr24:11457103-11456755 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 245 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 9, 98 |
Conread position: | 183-489 |
Cow position: | chr24:14617413-14617732 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 234 |
Alignm E-value: | 6.00036e-42 |
Alignm gaps (pig, cow): | 88, 53 |
Conread position: | 204-434 |
Cow position: | chr24:7401436-7401204 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 167 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 58, 21 |
Conread position: | 204-489 |
Cow position: | chr24:12572305-12572601 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 196 |
Alignm E-value: | 6e-21 |
Alignm gaps (pig, cow): | 58, 27 |
Conread position: | 204-503 |
Cow position: | chr24:2143516-2143834 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 231 |
Alignm E-value: | 5e-30 |
Alignm gaps (pig, cow): | 9, 185 |
Conread position: | 207-442 |
Cow position: | chr24:13297933-13297690 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 173 |
Alignm E-value: | 5e-29 |
Alignm gaps (pig, cow): | 57, 139 |
Conread position: | 218-503 |
Cow position: | chr24:18787127-18786838 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 221 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 16 |
Conread position: | 219-503 |
Cow position: | chr24:32086122-32085845 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 218 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 208, 41 |
Conread position: | 221-430 |
Cow position: | chr24:42419185-42418980 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 148 |
Alignm E-value: | 8e-24 |
Alignm gaps (pig, cow): | 97, 15 |
Conread position: | 231-503 |
Cow position: | chr24:31258530-31258253 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 209 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 12 |
Conread position: | 236-501 |
Cow position: | chr24:35827551-35827821 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 197 |
Alignm E-value: | 4e-38 |
Alignm gaps (pig, cow): | 26, 57 |
Conread position: | 258-446 |
Cow position: | chr24:14103425-14103614 (view UCSC Genome Browser custom track) |
Alignm length: | 192 |
Alignm identity: | 136 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 12, 7 |
Conread position: | 259-503 |
Cow position: | chr24:19611845-19612092 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 190 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 115 |
Conread position: | 261-495 |
Cow position: | chr24:26455677-26455919 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 183 |
Alignm E-value: | 5.99994e-41 |
Alignm gaps (pig, cow): | 7, 129 |
Conread position: | 269-500 |
Cow position: | chr24:16055648-16055429 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 164 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 64, 19 |
Conread position: | 269-503 |
Cow position: | chr24:11201799-11201562 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 177 |
Alignm E-value: | 5e-40 |
Alignm gaps (pig, cow): | 16, 125 |
Conread position: | 269-503 |
Cow position: | chr24:40809511-40809280 (view UCSC Genome Browser custom track) |
Alignm length: | 237 |
Alignm identity: | 178 |
Alignm E-value: | 5.99994e-41 |
Alignm gaps (pig, cow): | 101, 65 |
Conread position: | 278-479 |
Cow position: | chr24:36713608-36713816 (view UCSC Genome Browser custom track) |
Alignm length: | 211 |
Alignm identity: | 155 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 9, 86 |
Conread position: | 283-503 |
Cow position: | chr24:41963233-41963014 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 170 |
Alignm E-value: | 5.99994e-41 |
Alignm gaps (pig, cow): | 43, 37 |
Conread position: | 296-500 |
Cow position: | chr24:27900608-27900810 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 146 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 118, 38 |
Conread position: | 313-496 |
Cow position: | chr24:18567620-18567440 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 142 |
Alignm E-value: | 3e-34 |
Alignm gaps (pig, cow): | 58, 23 |
Conread position: | 334-494 |
Cow position: | chr24:22888504-22888668 (view UCSC Genome Browser custom track) |
Alignm length: | 167 |
Alignm identity: | 123 |
Alignm E-value: | 8e-23 |
Alignm gaps (pig, cow): | 35, 22 |
Conread position: | 336-503 |
Cow position: | chr24:19754490-19754657 (view UCSC Genome Browser custom track) |
Alignm length: | 169 |
Alignm identity: | 138 |
Alignm E-value: | 5e-40 |
Alignm gaps (pig, cow): | 7, 157 |
Conread position: | 337-495 |
Cow position: | chr24:24495921-24495763 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 127 |
Alignm E-value: | 3e-36 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 338-495 |
Cow position: | chr24:15617553-15617397 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 113 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 84, 0 |
Conread position: | 338-503 |
Cow position: | chr24:42681655-42681813 (view UCSC Genome Browser custom track) |
Alignm length: | 167 |
Alignm identity: | 123 |
Alignm E-value: | 8e-23 |
Alignm gaps (pig, cow): | 31, 57 |
Conread position: | 349-503 |
Cow position: | chr24:10546000-10546155 (view UCSC Genome Browser custom track) |
Alignm length: | 156 |
Alignm identity: | 114 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 21, 0 |
Conread position: | 369-483 |
Cow position: | chr24:30427867-30427753 (view UCSC Genome Browser custom track) |
Alignm length: | 115 |
Alignm identity: | 93 |
Alignm E-value: | 9e-25 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 400-503 |
Cow position: | chr24:41332602-41332498 (view UCSC Genome Browser custom track) |
Alignm length: | 105 |
Alignm identity: | 87 |
Alignm E-value: | 8e-23 |
Alignm gaps (pig, cow): | 6, 0 |
Show alignments to all cow chromosomes.