Cow genome map

Conread name: rpfco0129_n4.y1

Conread position: 1-449
Cow position: chr24:5849833-5849363 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 2-503
Cow position: chr24:1272294-1271804 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 67

Conread position: 3-490
Cow position: chr24:17763688-17763190 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 340
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 6, 68

Conread position: 3-490
Cow position: chr24:25229501-25228991 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 342
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 9, 70

Conread position: 3-503
Cow position: chr24:25677609-25678109 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 68

Conread position: 5-503
Cow position: chr24:39681449-39681937 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 64

Conread position: 6-444
Cow position: chr24:20862382-20861938 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 64

Conread position: 6-480
Cow position: chr24:32823213-32822708 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 340
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 84, 26

Conread position: 6-501
Cow position: chr24:30860208-30860719 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 63

Conread position: 6-502
Cow position: chr24:28335959-28335478 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 63

Conread position: 7-380
Cow position: chr24:37205293-37204917 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 48

Conread position: 8-491
Cow position: chr24:32759203-32758688 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 61

Conread position: 8-501
Cow position: chr24:17980801-17981268 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 43

Conread position: 8-502
Cow position: chr24:35568770-35569260 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 62

Conread position: 8-503
Cow position: chr24:32158685-32158190 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 61

Conread position: 9-503
Cow position: chr24:14337314-14337814 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 18

Conread position: 13-376
Cow position: chr24:38266773-38267146 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 57

Conread position: 14-426
Cow position: chr24:30484346-30483944 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 283
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 31, 27

Conread position: 14-486
Cow position: chr24:3493484-3493954 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 29

Conread position: 14-491
Cow position: chr24:28690286-28690758 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 7

Conread position: 14-495
Cow position: chr24:27683849-27683379 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 55

Conread position: 14-500
Cow position: chr24:29170564-29171044 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 327
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 172, 55

Conread position: 15-503
Cow position: chr24:12264101-12263628 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 325
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 222, 54

Conread position: 16-486
Cow position: chr24:17104973-17104500 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 24

Conread position: 46-491
Cow position: chr24:35150135-35150592 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 297
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 23, 136

Conread position: 52-394
Cow position: chr24:43733597-43733946 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 17

Conread position: 75-486
Cow position: chr24:29679663-29679243 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 15

Conread position: 76-442
Cow position: chr24:34532772-34533135 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 252
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 117, 241

Conread position: 77-491
Cow position: chr24:19535589-19535183 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 272
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 182, 29

Conread position: 78-503
Cow position: chr24:39123514-39123928 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 127

Conread position: 90-486
Cow position: chr24:40091905-40091511 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 25

Conread position: 95-495
Cow position: chr24:27054076-27054489 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 77

Conread position: 129-305
Cow position: chr24:36730202-36730384 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 45, 0

Conread position: 129-491
Cow position: chr24:43200573-43200200 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 255
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 7, 220

Conread position: 135-503
Cow position: chr24:7079499-7079870 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 265
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 107, 29

Conread position: 135-503
Cow position: chr24:34369298-34368921 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 43

Conread position: 136-503
Cow position: chr24:36801112-36801461 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 93

Conread position: 137-402
Cow position: chr24:21860511-21860242 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 184
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 25, 42

Conread position: 137-427
Cow position: chr24:30900517-30900222 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 206
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 51, 20

Conread position: 139-284
Cow position: chr24:28060714-28060564 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 47, 38

Conread position: 140-427
Cow position: chr24:35795027-35794730 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 202
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 48, 178

Conread position: 140-427
Cow position: chr24:39955333-39955045 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 217
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 47, 175

Conread position: 140-503
Cow position: chr24:27633126-27633484 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 177

Conread position: 140-503
Cow position: chr24:28279357-28279710 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 34

Conread position: 142-464
Cow position: chr24:23685346-23685019 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 149

Conread position: 142-503
Cow position: chr24:1438552-1438184 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 239
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 45, 122

Conread position: 142-503
Cow position: chr24:6508048-6507685 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 26

Conread position: 142-503
Cow position: chr24:42943407-42943034 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 252
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 26, 95

Conread position: 143-503
Cow position: chr24:14746353-14746734 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 266
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 118, 38

Conread position: 144-491
Cow position: chr24:39350491-39350142 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 74

Conread position: 144-503
Cow position: chr24:24311218-24311587 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 24

Conread position: 150-446
Cow position: chr24:30545133-30544838 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 215
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 36, 95

Conread position: 150-503
Cow position: chr24:31378477-31378836 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 199

Conread position: 153-491
Cow position: chr24:35529649-35529981 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 138

Conread position: 154-427
Cow position: chr24:16476134-16476411 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 200
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 34, 14

Conread position: 156-418
Cow position: chr24:39258893-39259157 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 143

Conread position: 168-495
Cow position: chr24:32894153-32894469 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 225
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 8, 31

Conread position: 169-503
Cow position: chr24:28349327-28349661 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 237
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 19, 76

Conread position: 174-503
Cow position: chr24:23824670-23824336 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 237
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 15, 112

Conread position: 179-503
Cow position: chr24:11457103-11456755 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 245
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 9, 98

Conread position: 183-489
Cow position: chr24:14617413-14617732 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 234
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 88, 53

Conread position: 204-434
Cow position: chr24:7401436-7401204 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 58, 21

Conread position: 204-489
Cow position: chr24:12572305-12572601 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 196
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 58, 27

Conread position: 204-503
Cow position: chr24:2143516-2143834 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 231
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 9, 185

Conread position: 207-442
Cow position: chr24:13297933-13297690 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 173
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 57, 139

Conread position: 218-503
Cow position: chr24:18787127-18786838 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 16

Conread position: 219-503
Cow position: chr24:32086122-32085845 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 41

Conread position: 221-430
Cow position: chr24:42419185-42418980 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 97, 15

Conread position: 231-503
Cow position: chr24:31258530-31258253 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 12

Conread position: 236-501
Cow position: chr24:35827551-35827821 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 197
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 26, 57

Conread position: 258-446
Cow position: chr24:14103425-14103614 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 12, 7

Conread position: 259-503
Cow position: chr24:19611845-19612092 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 115

Conread position: 261-495
Cow position: chr24:26455677-26455919 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 7, 129

Conread position: 269-500
Cow position: chr24:16055648-16055429 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 164
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 64, 19

Conread position: 269-503
Cow position: chr24:11201799-11201562 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 16, 125

Conread position: 269-503
Cow position: chr24:40809511-40809280 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 178
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 101, 65

Conread position: 278-479
Cow position: chr24:36713608-36713816 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 9, 86

Conread position: 283-503
Cow position: chr24:41963233-41963014 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 170
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 43, 37

Conread position: 296-500
Cow position: chr24:27900608-27900810 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 118, 38

Conread position: 313-496
Cow position: chr24:18567620-18567440 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 58, 23

Conread position: 334-494
Cow position: chr24:22888504-22888668 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 35, 22

Conread position: 336-503
Cow position: chr24:19754490-19754657 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 138
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 7, 157

Conread position: 337-495
Cow position: chr24:24495921-24495763 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 127
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 338-495
Cow position: chr24:15617553-15617397 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 84, 0

Conread position: 338-503
Cow position: chr24:42681655-42681813 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 31, 57

Conread position: 349-503
Cow position: chr24:10546000-10546155 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 369-483
Cow position: chr24:30427867-30427753 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 400-503
Cow position: chr24:41332602-41332498 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 6, 0

Show alignments to all cow chromosomes.