Cow genome map
| Conread name: | rpfco0129_n4.y1 |
| Conread position: | 3-500 |
| Cow position: | chr25:14569966-14570476 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 40 |
| Conread position: | 3-502 |
| Cow position: | chr25:10748904-10748394 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 4-478 |
| Cow position: | chr25:29215805-29215313 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 334 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 5, 43 |
| Conread position: | 5-491 |
| Cow position: | chr25:20496141-20496634 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 64 |
| Conread position: | 6-500 |
| Cow position: | chr25:20076101-20076602 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 45 |
| Conread position: | 6-503 |
| Cow position: | chr25:22910261-22909753 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 6-503 |
| Cow position: | chr25:23410267-23410766 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 63 |
| Conread position: | 7-487 |
| Cow position: | chr25:12235150-12234684 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 46 |
| Conread position: | 7-491 |
| Cow position: | chr25:20007724-20008229 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 344 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 119, 62 |
| Conread position: | 8-503 |
| Cow position: | chr25:10012449-10011951 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 61 |
| Conread position: | 9-374 |
| Cow position: | chr25:16430417-16430058 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 254, 60 |
| Conread position: | 11-503 |
| Cow position: | chr25:24136836-24136333 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 58 |
| Conread position: | 13-250 |
| Cow position: | chr25:40388843-40388612 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 13-500 |
| Cow position: | chr25:8576309-8576799 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 56 |
| Conread position: | 13-501 |
| Cow position: | chr25:13325212-13325685 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 8 |
| Conread position: | 14-336 |
| Cow position: | chr25:27531655-27531332 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 77, 51 |
| Conread position: | 14-425 |
| Cow position: | chr25:24572681-24573093 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 9, 55 |
| Conread position: | 14-480 |
| Cow position: | chr25:16922183-16921712 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 19 |
| Conread position: | 14-491 |
| Cow position: | chr25:10504729-10504245 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 9, 64 |
| Conread position: | 15-490 |
| Cow position: | chr25:27504561-27504106 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 326 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 159, 45 |
| Conread position: | 16-359 |
| Cow position: | chr25:12204081-12204432 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 53 |
| Conread position: | 17-450 |
| Cow position: | chr25:36761729-36762156 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 171, 52 |
| Conread position: | 29-444 |
| Cow position: | chr25:12239510-12239099 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 9 |
| Conread position: | 39-503 |
| Cow position: | chr25:40957351-40956880 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 34 |
| Conread position: | 61-503 |
| Cow position: | chr25:20625273-20624828 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 100 |
| Conread position: | 110-503 |
| Cow position: | chr25:18000805-18000423 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 18 |
| Conread position: | 122-490 |
| Cow position: | chr25:30035269-30035645 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 66, 41 |
| Conread position: | 130-495 |
| Cow position: | chr25:34970204-34970562 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 117 |
| Conread position: | 135-319 |
| Cow position: | chr25:17712264-17712456 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 53, 126 |
| Conread position: | 135-446 |
| Cow position: | chr25:33691284-33691608 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 51, 33 |
| Conread position: | 135-486 |
| Cow position: | chr25:5407481-5407834 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 171, 11 |
| Conread position: | 136-404 |
| Cow position: | chr25:13798960-13799218 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 138-441 |
| Cow position: | chr25:18130808-18131109 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 140-420 |
| Cow position: | chr25:35344773-35345052 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 46, 112 |
| Conread position: | 141-503 |
| Cow position: | chr25:8512355-8511985 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 263 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 103, 23 |
| Conread position: | 142-445 |
| Cow position: | chr25:10448962-10448667 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 88 |
| Conread position: | 142-480 |
| Cow position: | chr25:38135484-38135835 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 32, 104 |
| Conread position: | 142-495 |
| Cow position: | chr25:34668982-34669342 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 258 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 102, 7 |
| Conread position: | 142-503 |
| Cow position: | chr25:24406003-24405626 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 235 |
| Conread position: | 156-503 |
| Cow position: | chr25:22575767-22575421 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 88, 20 |
| Conread position: | 157-475 |
| Cow position: | chr25:22735875-22736194 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 16, 82 |
| Conread position: | 168-424 |
| Cow position: | chr25:8560632-8560893 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 20, 41 |
| Conread position: | 171-501 |
| Cow position: | chr25:14467319-14466988 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 175-496 |
| Cow position: | chr25:17365487-17365167 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 190-486 |
| Cow position: | chr25:34768934-34768640 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 72, 80 |
| Conread position: | 191-503 |
| Cow position: | chr25:33245720-33246024 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 137 |
| Conread position: | 216-439 |
| Cow position: | chr25:36644142-36643915 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 19, 105 |
| Conread position: | 217-481 |
| Cow position: | chr25:18905694-18905971 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 27, 100 |
| Conread position: | 224-503 |
| Cow position: | chr25:32606506-32606218 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 20, 167 |
| Conread position: | 231-502 |
| Cow position: | chr25:11989687-11989407 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 231-503 |
| Cow position: | chr25:26457853-26457570 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 37, 28 |
| Conread position: | 236-503 |
| Cow position: | chr25:33411090-33411365 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 27, 54 |
| Conread position: | 253-503 |
| Cow position: | chr25:34379251-34378997 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 33, 46 |
| Conread position: | 264-489 |
| Cow position: | chr25:16560311-16560080 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 22, 5 |
| Conread position: | 269-480 |
| Cow position: | chr25:9519195-9519404 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 64, 26 |
| Conread position: | 269-503 |
| Cow position: | chr25:16691533-16691764 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 62, 102 |
| Conread position: | 269-503 |
| Cow position: | chr25:33112098-33111868 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 64, 86 |
| Conread position: | 275-503 |
| Cow position: | chr25:26240418-26240646 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 50, 62 |
| Conread position: | 276-503 |
| Cow position: | chr25:13560330-13560105 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 284-503 |
| Cow position: | chr25:14075187-14075411 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 113 |
| Conread position: | 289-503 |
| Cow position: | chr25:22542910-22542706 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 40, 36 |
| Conread position: | 293-496 |
| Cow position: | chr25:13727486-13727287 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 296-500 |
| Cow position: | chr25:8080619-8080831 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 37, 150 |
| Conread position: | 296-503 |
| Cow position: | chr25:13562337-13562545 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 330-502 |
| Cow position: | chr25:15358428-15358261 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 330-503 |
| Cow position: | chr25:20811438-20811266 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 99, 39 |
| Conread position: | 332-503 |
| Cow position: | chr25:10510944-10510779 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 18, 31 |
Show alignments to all cow chromosomes.