Cow genome map


           Conread name:
           rpfco0129_n4.y1
        

               Conread position:
               3-291
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               7, 46
               

               Conread position:
               3-503
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 75
               

               Conread position:
               5-486
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 64
               

               Conread position:
               5-503
               

               Cow position:
               
               

               Alignm length:
               511
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 64
               

               Conread position:
               5-503
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 70
               

               Conread position:
               6-379
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 63
               

               Conread position:
               6-406
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 12
               

               Conread position:
               6-490
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 63
               

               Conread position:
               6-503
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 63
               

               Conread position:
               7-361
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               252, 62
               

               Conread position:
               7-386
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 62
               

               Conread position:
               8-503
               

               Cow position:
               
               

               Alignm length:
               504
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 61
               

               Conread position:
               11-487
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 37
               

               Conread position:
               13-502
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 56
               

               Conread position:
               14-486
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 55
               

               Conread position:
               14-486
               

               Cow position:
               
               

               Alignm length:
               502
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 86
               

               Conread position:
               52-500
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 17
               

               Conread position:
               97-411
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               211
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               91, 29
               

               Conread position:
               119-480
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               137, 49
               

               Conread position:
               129-446
               

               Cow position:
               
               

               Alignm length:
               333
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 294
               

               Conread position:
               130-503
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 112
               

               Conread position:
               131-496
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               57, 126
               

               Conread position:
               135-486
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               122, 13
               

               Conread position:
               135-487
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 242
               

               Conread position:
               136-485
               

               Cow position:
               
               

               Alignm length:
               366
               

               Alignm identity:
               251
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               52, 12
               

               Conread position:
               136-503
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 32
               

               Conread position:
               136-503
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 126
               

               Conread position:
               142-494
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 65
               

               Conread position:
               142-503
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 26
               

               Conread position:
               142-503
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 98
               

               Conread position:
               144-503
               

               Cow position:
               
               

               Alignm length:
               364
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 70
               

               Conread position:
               145-488
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 23
               

               Conread position:
               146-503
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 36
               

               Conread position:
               151-491
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               237
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               37, 17
               

               Conread position:
               152-476
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               226
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               35, 208
               

               Conread position:
               168-485
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               20, 129
               

               Conread position:
               168-496
               

               Cow position:
               
               

               Alignm length:
               340
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 215
               

               Conread position:
               168-503
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 54
               

               Conread position:
               174-503
               

               Cow position:
               
               

               Alignm length:
               341
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               26, 108
               

               Conread position:
               178-503
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               229
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               78, 157
               

               Conread position:
               191-503
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               240
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               61, 214
               

               Conread position:
               201-502
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               204-503
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               224
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               7, 186
               

               Conread position:
               208-503
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               125, 42
               

               Conread position:
               221-446
               

               Cow position:
               
               

               Alignm length:
               242
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               23, 151
               

               Conread position:
               221-489
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               14, 40
               

               Conread position:
               234-486
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               22, 26
               

               Conread position:
               238-503
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 174
               

               Conread position:
               239-503
               

               Cow position:
               
               

               Alignm length:
               285
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               23, 74
               

               Conread position:
               239-503
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               13, 133
               

               Conread position:
               252-439
               

               Cow position:
               
               

               Alignm length:
               193
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               21, 7
               

               Conread position:
               271-502
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               20, 70
               

               Conread position:
               273-500
               

               Cow position:
               
               

               Alignm length:
               232
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               10, 33
               

               Conread position:
               279-503
               

               Cow position:
               
               

               Alignm length:
               229
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               54, 96
               

               Conread position:
               281-503
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               11, 95
               

               Conread position:
               284-503
               

               Cow position:
               
               

               Alignm length:
               221
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               12, 41
               

               Conread position:
               292-503
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               165
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               131, 29
               

               Conread position:
               293-503
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               9, 159
               

               Conread position:
               324-503
               

               Cow position:
               
               

               Alignm length:
               185
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               98, 43
               

               Conread position:
               329-503
               

               Cow position:
               
               

               Alignm length:
               181
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               96, 128
               

               Conread position:
               334-503
               

               Cow position:
               
               

               Alignm length:
               170
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               342-503
               

               Cow position:
               
               

               Alignm length:
               166
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               31, 26
               

               Conread position:
               344-503
               

               Cow position:
               
               

               Alignm length:
               160
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               355-500
               

               Cow position:
               
               

               Alignm length:
               149
               

               Alignm identity:
               114
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               355-503
               

               Cow position:
               
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               366-503
               

               Cow position:
               
               

               Alignm length:
               138
               

               Alignm identity:
               112
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               378-503
               

               Cow position:
               
               

               Alignm length:
               126
               

               Alignm identity:
               105
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               384-489
               

               Cow position:
               
               

               Alignm length:
               106
               

               Alignm identity:
               85
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               393-488
               

               Cow position:
               
               

               Alignm length:
               96
               

               Alignm identity:
               81
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.