Cow genome map

Conread name: rpfco0129_n4.y1

Conread position: 3-291
Cow position: chr26:19537118-19537417 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 209
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 7, 46

Conread position: 3-503
Cow position: chr26:2389442-2388942 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 75

Conread position: 5-486
Cow position: chr26:34108390-34108869 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 64

Conread position: 5-503
Cow position: chr26:8651963-8651482 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 64

Conread position: 5-503
Cow position: chr26:21859440-21859951 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 70

Conread position: 6-379
Cow position: chr26:31794400-31794773 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 63

Conread position: 6-406
Cow position: chr26:2246565-2246983 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 12

Conread position: 6-490
Cow position: chr26:34031708-34032208 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 63

Conread position: 6-503
Cow position: chr26:783312-782803 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 63

Conread position: 7-361
Cow position: chr26:10813843-10814183 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 62

Conread position: 7-386
Cow position: chr26:6323287-6323664 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 62

Conread position: 8-503
Cow position: chr26:3755864-3756349 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 61

Conread position: 11-487
Cow position: chr26:9063969-9064452 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 37

Conread position: 13-502
Cow position: chr26:29353884-29353386 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 56

Conread position: 14-486
Cow position: chr26:8700421-8699936 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 55

Conread position: 14-486
Cow position: chr26:25393656-25394150 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 86

Conread position: 52-500
Cow position: chr26:16603959-16604410 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 17

Conread position: 97-411
Cow position: chr26:34847457-34847774 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 211
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 91, 29

Conread position: 119-480
Cow position: chr26:26466985-26466628 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 241
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 137, 49

Conread position: 129-446
Cow position: chr26:33745656-33745986 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 294

Conread position: 130-503
Cow position: chr26:9666666-9666288 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 112

Conread position: 131-496
Cow position: chr26:27083-26716 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 246
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 57, 126

Conread position: 135-486
Cow position: chr26:23097427-23097083 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 240
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 122, 13

Conread position: 135-487
Cow position: chr26:7103288-7102935 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 242

Conread position: 136-485
Cow position: chr26:2610048-2609697 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 251
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 52, 12

Conread position: 136-503
Cow position: chr26:2770086-2769715 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 32

Conread position: 136-503
Cow position: chr26:14080467-14080832 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 126

Conread position: 142-494
Cow position: chr26:14924255-14924599 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 65

Conread position: 142-503
Cow position: chr26:4748101-4747734 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 26

Conread position: 142-503
Cow position: chr26:17288962-17289324 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 98

Conread position: 144-503
Cow position: chr26:2408950-2408604 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 70

Conread position: 145-488
Cow position: chr26:12668959-12669311 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 23

Conread position: 146-503
Cow position: chr26:9632610-9632237 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 36

Conread position: 151-491
Cow position: chr26:17057448-17057794 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 237
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 37, 17

Conread position: 152-476
Cow position: chr26:6793906-6794245 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 226
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 35, 208

Conread position: 168-485
Cow position: chr26:6006264-6005949 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 229
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 20, 129

Conread position: 168-496
Cow position: chr26:20129893-20129560 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 215

Conread position: 168-503
Cow position: chr26:17204357-17204018 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 54

Conread position: 174-503
Cow position: chr26:32866100-32865765 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 230
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 26, 108

Conread position: 178-503
Cow position: chr26:21339618-21339928 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 229
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 78, 157

Conread position: 191-503
Cow position: chr26:19110708-19111040 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 240
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 61, 214

Conread position: 201-502
Cow position: chr26:3019612-3019292 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 204-503
Cow position: chr26:30605545-30605240 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 224
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 7, 186

Conread position: 208-503
Cow position: chr26:10292420-10292728 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 213
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 125, 42

Conread position: 221-446
Cow position: chr26:22249646-22249408 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 23, 151

Conread position: 221-489
Cow position: chr26:19178456-19178713 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 192
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 14, 40

Conread position: 234-486
Cow position: chr26:8642795-8643052 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 180
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 22, 26

Conread position: 238-503
Cow position: chr26:27585627-27585898 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 174

Conread position: 239-503
Cow position: chr26:12519872-12520154 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 210
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 23, 74

Conread position: 239-503
Cow position: chr26:22975130-22975392 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 191
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 13, 133

Conread position: 252-439
Cow position: chr26:33194518-33194703 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 21, 7

Conread position: 271-502
Cow position: chr26:5171910-5171684 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 20, 70

Conread position: 273-500
Cow position: chr26:6470380-6470152 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 156
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 33

Conread position: 279-503
Cow position: chr26:18719153-18719380 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 170
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 54, 96

Conread position: 281-503
Cow position: chr26:17155424-17155203 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 170
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 11, 95

Conread position: 284-503
Cow position: chr26:21578176-21577974 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 166
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 12, 41

Conread position: 292-503
Cow position: chr26:7955771-7955978 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 131, 29

Conread position: 293-503
Cow position: chr26:29244311-29244523 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 9, 159

Conread position: 324-503
Cow position: chr26:7162467-7162285 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 98, 43

Conread position: 329-503
Cow position: chr26:34119087-34118908 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 96, 128

Conread position: 334-503
Cow position: chr26:11568014-11567847 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 15, 0

Conread position: 342-503
Cow position: chr26:19903343-19903506 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 31, 26

Conread position: 344-503
Cow position: chr26:32854318-32854161 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 63, 0

Conread position: 355-500
Cow position: chr26:34521547-34521695 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 8, 0

Conread position: 355-503
Cow position: chr26:24183067-24182923 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 366-503
Cow position: chr26:19935370-19935235 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 12, 0

Conread position: 378-503
Cow position: chr26:10523449-10523326 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 105
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 65, 0

Conread position: 384-489
Cow position: chr26:8823722-8823827 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 85
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 393-488
Cow position: chr26:21057421-21057326 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 81
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.