Cow genome map
| Conread name: | rpfco0129_n4.y1 |
| Conread position: | 5-481 |
| Cow position: | chr27:13411008-13411500 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 325 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 184, 64 |
| Conread position: | 5-503 |
| Cow position: | chr27:26300188-26299689 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 64 |
| Conread position: | 6-486 |
| Cow position: | chr27:22394529-22394045 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 71 |
| Conread position: | 6-491 |
| Cow position: | chr27:25471511-25471007 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 63 |
| Conread position: | 7-411 |
| Cow position: | chr27:30519012-30518622 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 282 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 37, 63 |
| Conread position: | 8-441 |
| Cow position: | chr27:9371850-9371428 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 293 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 179, 61 |
| Conread position: | 8-485 |
| Cow position: | chr27:6454564-6454071 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 62 |
| Conread position: | 8-494 |
| Cow position: | chr27:20765602-20766097 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 8-495 |
| Cow position: | chr27:4664820-4664333 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 29 |
| Conread position: | 8-500 |
| Cow position: | chr27:491248-490750 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 72 |
| Conread position: | 8-503 |
| Cow position: | chr27:27049573-27050061 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 49 |
| Conread position: | 9-269 |
| Cow position: | chr27:23511467-23511207 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 179, 9 |
| Conread position: | 9-318 |
| Cow position: | chr27:24937973-24938282 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 10, 62 |
| Conread position: | 9-367 |
| Cow position: | chr27:25292511-25292146 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 259 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 117, 60 |
| Conread position: | 13-380 |
| Cow position: | chr27:12231564-12231940 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 270 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 113, 19 |
| Conread position: | 13-502 |
| Cow position: | chr27:25982371-25982871 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 55 |
| Conread position: | 14-442 |
| Cow position: | chr27:13876070-13875640 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 19 |
| Conread position: | 14-481 |
| Cow position: | chr27:25809179-25809647 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 55 |
| Conread position: | 14-486 |
| Cow position: | chr27:10992711-10992219 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 55 |
| Conread position: | 14-491 |
| Cow position: | chr27:21393163-21393649 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 55 |
| Conread position: | 14-491 |
| Cow position: | chr27:23632940-23632458 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 318 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 224, 55 |
| Conread position: | 14-500 |
| Cow position: | chr27:15319794-15319309 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 29 |
| Conread position: | 18-503 |
| Cow position: | chr27:30561256-30560772 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 52 |
| Conread position: | 56-492 |
| Cow position: | chr27:21668822-21669261 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 291 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 30, 22 |
| Conread position: | 81-503 |
| Cow position: | chr27:21139103-21138677 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 17 |
| Conread position: | 99-392 |
| Cow position: | chr27:16580880-16580579 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 89, 36 |
| Conread position: | 122-503 |
| Cow position: | chr27:26440822-26441201 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 7 |
| Conread position: | 129-503 |
| Cow position: | chr27:13006064-13005696 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 134-503 |
| Cow position: | chr27:29038716-29039095 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 6 |
| Conread position: | 135-503 |
| Cow position: | chr27:11416669-11416298 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 109 |
| Conread position: | 135-503 |
| Cow position: | chr27:16493779-16493432 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 127, 48 |
| Conread position: | 137-503 |
| Cow position: | chr27:465175-464818 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 248 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 37, 81 |
| Conread position: | 140-491 |
| Cow position: | chr27:30354126-30354486 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 237 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 48, 34 |
| Conread position: | 140-503 |
| Cow position: | chr27:8048520-8048885 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 55 |
| Conread position: | 141-482 |
| Cow position: | chr27:31251107-31251448 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 141-503 |
| Cow position: | chr27:25998923-25998548 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 161 |
| Conread position: | 142-500 |
| Cow position: | chr27:19543692-19544071 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 272 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 46, 118 |
| Conread position: | 142-503 |
| Cow position: | chr27:29019529-29019887 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 270 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 32, 80 |
| Conread position: | 143-491 |
| Cow position: | chr27:20553933-20553590 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 45, 175 |
| Conread position: | 144-413 |
| Cow position: | chr27:19637849-19637578 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 106, 24 |
| Conread position: | 146-503 |
| Cow position: | chr27:24342117-24341751 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 257 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 149-503 |
| Cow position: | chr27:27053507-27053142 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 39, 127 |
| Conread position: | 153-503 |
| Cow position: | chr27:19647738-19648096 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 248 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 109, 33 |
| Conread position: | 156-491 |
| Cow position: | chr27:19546301-19546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 73, 30 |
| Conread position: | 163-503 |
| Cow position: | chr27:23659144-23659477 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 240 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 166-490 |
| Cow position: | chr27:25676420-25676089 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 22, 253 |
| Conread position: | 166-495 |
| Cow position: | chr27:24224713-24225044 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 11, 107 |
| Conread position: | 168-381 |
| Cow position: | chr27:6037314-6037093 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 20, 124 |
| Conread position: | 169-503 |
| Cow position: | chr27:14937238-14937583 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 91 |
| Conread position: | 170-486 |
| Cow position: | chr27:18593460-18593135 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 18, 147 |
| Conread position: | 186-389 |
| Cow position: | chr27:27550575-27550776 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 96 |
| Conread position: | 193-503 |
| Cow position: | chr27:23662439-23662746 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 51, 104 |
| Conread position: | 200-487 |
| Cow position: | chr27:23600423-23600135 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 68, 199 |
| Conread position: | 203-490 |
| Cow position: | chr27:4007090-4007397 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 174 |
| Conread position: | 204-497 |
| Cow position: | chr27:12243981-12244273 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 129, 45 |
| Conread position: | 217-490 |
| Cow position: | chr27:19601518-19601232 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 39, 102 |
| Conread position: | 220-475 |
| Cow position: | chr27:12424788-12425042 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 194 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 98, 43 |
| Conread position: | 220-503 |
| Cow position: | chr27:19909520-19909215 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 236-491 |
| Cow position: | chr27:11356426-11356679 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 10, 23 |
| Conread position: | 258-503 |
| Cow position: | chr27:30365406-30365165 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 156, 11 |
| Conread position: | 269-503 |
| Cow position: | chr27:25970476-25970254 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 273-503 |
| Cow position: | chr27:783775-783551 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 273-503 |
| Cow position: | chr27:19083633-19083870 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 60, 102 |
| Conread position: | 280-501 |
| Cow position: | chr27:23959366-23959152 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 86 |
| Conread position: | 284-495 |
| Cow position: | chr27:2354703-2354915 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 324-503 |
| Cow position: | chr27:1536693-1536880 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 51, 12 |
| Conread position: | 330-485 |
| Cow position: | chr27:19869850-19869695 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 337-503 |
| Cow position: | chr27:12247692-12247533 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 338-477 |
| Cow position: | chr27:13970374-13970513 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-503 |
| Cow position: | chr27:21970900-21971035 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 377-503 |
| Cow position: | chr27:10119102-10119236 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 379-503 |
| Cow position: | chr27:16525870-16525994 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 405-503 |
| Cow position: | chr27:18219342-18219244 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 84 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 406-503 |
| Cow position: | chr27:6347807-6347904 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 81 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.