Cow genome map


           Conread name:
           rpfco0129_n4.y1
        

               Conread position:
               3-489
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 66
               

               Conread position:
               3-503
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 67
               

               Conread position:
               6-437
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               308
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               120, 51
               

               Conread position:
               6-438
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 15
               

               Conread position:
               6-455
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 67
               

               Conread position:
               6-501
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 66
               

               Conread position:
               6-503
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 63
               

               Conread position:
               6-503
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               351
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               120, 14
               

               Conread position:
               8-485
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               339
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               118, 10
               

               Conread position:
               8-501
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               328
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               222, 61
               

               Conread position:
               9-491
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 60
               

               Conread position:
               13-436
               

               Cow position:
               
               

               Alignm length:
               431
               

               Alignm identity:
               283
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               28, 57
               

               Conread position:
               13-447
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 56
               

               Conread position:
               13-488
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 56
               

               Conread position:
               13-503
               

               Cow position:
               
               

               Alignm length:
               507
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 121
               

               Conread position:
               14-491
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 55
               

               Conread position:
               16-329
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               226
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               76, 53
               

               Conread position:
               23-491
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 46
               

               Conread position:
               25-446
               

               Cow position:
               
               

               Alignm length:
               431
               

               Alignm identity:
               284
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               242, 44
               

               Conread position:
               27-446
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               288
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               159, 42
               

               Conread position:
               29-446
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               227, 40
               

               Conread position:
               36-444
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 33
               

               Conread position:
               55-473
               

               Cow position:
               
               

               Alignm length:
               430
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 18
               

               Conread position:
               55-503
               

               Cow position:
               
               

               Alignm length:
               465
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 14
               

               Conread position:
               65-317
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               74, 231
               

               Conread position:
               73-309
               

               Cow position:
               
               

               Alignm length:
               256
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               73-433
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               257
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               101, 15
               

               Conread position:
               98-499
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               288
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               78, 144
               

               Conread position:
               101-292
               

               Cow position:
               
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               69, 25
               

               Conread position:
               101-486
               

               Cow position:
               
               

               Alignm length:
               391
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 63
               

               Conread position:
               115-500
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               268
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               73, 53
               

               Conread position:
               116-502
               

               Cow position:
               
               

               Alignm length:
               396
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 14
               

               Conread position:
               117-503
               

               Cow position:
               
               

               Alignm length:
               397
               

               Alignm identity:
               273
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               31, 44
               

               Conread position:
               123-503
               

               Cow position:
               
               

               Alignm length:
               400
               

               Alignm identity:
               276
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               12, 26
               

               Conread position:
               135-482
               

               Cow position:
               
               

               Alignm length:
               354
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               35, 84
               

               Conread position:
               135-485
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               259
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               54, 162
               

               Conread position:
               135-503
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 161
               

               Conread position:
               136-503
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 156
               

               Conread position:
               142-366
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               45, 26
               

               Conread position:
               142-495
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               47, 81
               

               Conread position:
               142-500
               

               Cow position:
               
               

               Alignm length:
               366
               

               Alignm identity:
               249
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               126, 79
               

               Conread position:
               142-503
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               256
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               18, 207
               

               Conread position:
               144-483
               

               Cow position:
               
               

               Alignm length:
               349
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 24
               

               Conread position:
               144-503
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 24
               

               Conread position:
               146-441
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               227
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               42, 72
               

               Conread position:
               148-490
               

               Cow position:
               
               

               Alignm length:
               353
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               40, 104
               

               Conread position:
               152-503
               

               Cow position:
               
               

               Alignm length:
               373
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 225
               

               Conread position:
               168-494
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               254
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               20, 233
               

               Conread position:
               168-503
               

               Cow position:
               
               

               Alignm length:
               340
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 97
               

               Conread position:
               177-503
               

               Cow position:
               
               

               Alignm length:
               340
               

               Alignm identity:
               242
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               79, 10
               

               Conread position:
               188-487
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               216
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               13, 44
               

               Conread position:
               193-448
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               177
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               67, 38
               

               Conread position:
               216-488
               

               Cow position:
               
               

               Alignm length:
               284
               

               Alignm identity:
               203
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               55, 20
               

               Conread position:
               224-503
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               11, 90
               

               Conread position:
               241-503
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               199
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               15, 20
               

               Conread position:
               242-503
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               201
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               20, 56
               

               Conread position:
               270-503
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               184, 51
               

               Conread position:
               271-490
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               93, 15
               

               Conread position:
               271-503
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               181
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               9, 18
               

               Conread position:
               280-503
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               46, 112
               

               Conread position:
               283-503
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               171
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               10, 59
               

               Conread position:
               285-503
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               158
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               48, 105
               

               Conread position:
               297-500
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               36, 10
               

               Conread position:
               330-488
               

               Cow position:
               
               

               Alignm length:
               159
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               332-491
               

               Cow position:
               
               

               Alignm length:
               161
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               40, 27
               

               Conread position:
               336-503
               

               Cow position:
               
               

               Alignm length:
               172
               

               Alignm identity:
               123
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               87, 117
               

               Conread position:
               337-503
               

               Cow position:
               
               

               Alignm length:
               171
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               77, 146
               

               Conread position:
               337-503
               

               Cow position:
               
               

               Alignm length:
               171
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               338-503
               

               Cow position:
               
               

               Alignm length:
               171
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               88, 40
               

               Conread position:
               344-503
               

               Cow position:
               
               

               Alignm length:
               160
               

               Alignm identity:
               119
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               14, 0
               
Show alignments to all cow chromosomes.