Cow genome map
| Conread name: | rpfco0129_n4.y1 |
| Conread position: | 3-489 |
| Cow position: | chr28:32300759-32300256 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 66 |
| Conread position: | 3-503 |
| Cow position: | chr28:3770064-3769556 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 67 |
| Conread position: | 6-437 |
| Cow position: | chr28:15590610-15591018 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 308 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 120, 51 |
| Conread position: | 6-438 |
| Cow position: | chr28:29392613-29393058 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 15 |
| Conread position: | 6-455 |
| Cow position: | chr28:18463014-18462546 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 67 |
| Conread position: | 6-501 |
| Cow position: | chr28:25334630-25335140 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 66 |
| Conread position: | 6-503 |
| Cow position: | chr28:18934080-18934569 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 63 |
| Conread position: | 6-503 |
| Cow position: | chr28:34150924-34150437 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 351 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 120, 14 |
| Conread position: | 8-485 |
| Cow position: | chr28:20264989-20265498 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 339 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 118, 10 |
| Conread position: | 8-501 |
| Cow position: | chr28:2090787-2091277 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 328 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 222, 61 |
| Conread position: | 9-491 |
| Cow position: | chr28:13693362-13693852 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 60 |
| Conread position: | 13-436 |
| Cow position: | chr28:5904352-5904776 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 283 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 28, 57 |
| Conread position: | 13-447 |
| Cow position: | chr28:10642399-10641975 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 56 |
| Conread position: | 13-488 |
| Cow position: | chr28:25563695-25564184 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 56 |
| Conread position: | 13-503 |
| Cow position: | chr28:15677511-15678001 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 121 |
| Conread position: | 14-491 |
| Cow position: | chr28:21598635-21598147 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 55 |
| Conread position: | 16-329 |
| Cow position: | chr28:13371556-13371236 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 76, 53 |
| Conread position: | 23-491 |
| Cow position: | chr28:2814871-2814406 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 46 |
| Conread position: | 25-446 |
| Cow position: | chr28:5817481-5817899 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 284 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 242, 44 |
| Conread position: | 27-446 |
| Cow position: | chr28:5826579-5827007 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 159, 42 |
| Conread position: | 29-446 |
| Cow position: | chr28:12942025-12942435 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 40 |
| Conread position: | 36-444 |
| Cow position: | chr28:13267421-13267844 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 33 |
| Conread position: | 55-473 |
| Cow position: | chr28:16686693-16687111 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 18 |
| Conread position: | 55-503 |
| Cow position: | chr28:25826204-25825751 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 14 |
| Conread position: | 65-317 |
| Cow position: | chr28:11827154-11827418 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 74, 231 |
| Conread position: | 73-309 |
| Cow position: | chr28:10514429-10514174 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 73-433 |
| Cow position: | chr28:15007840-15008198 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 257 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 101, 15 |
| Conread position: | 98-499 |
| Cow position: | chr28:23008027-23007619 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 288 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 78, 144 |
| Conread position: | 101-292 |
| Cow position: | chr28:16350336-16350145 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 69, 25 |
| Conread position: | 101-486 |
| Cow position: | chr28:10035119-10035484 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 63 |
| Conread position: | 115-500 |
| Cow position: | chr28:26743340-26743738 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 73, 53 |
| Conread position: | 116-502 |
| Cow position: | chr28:29455937-29455557 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 14 |
| Conread position: | 117-503 |
| Cow position: | chr28:12047174-12046798 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 31, 44 |
| Conread position: | 123-503 |
| Cow position: | chr28:20963805-20963414 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 12, 26 |
| Conread position: | 135-482 |
| Cow position: | chr28:34199360-34199014 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 135-485 |
| Cow position: | chr28:9177016-9176658 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 54, 162 |
| Conread position: | 135-503 |
| Cow position: | chr28:19133521-19133889 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 161 |
| Conread position: | 136-503 |
| Cow position: | chr28:21873511-21873874 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 156 |
| Conread position: | 142-366 |
| Cow position: | chr28:28414415-28414649 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 45, 26 |
| Conread position: | 142-495 |
| Cow position: | chr28:13865590-13865946 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 47, 81 |
| Conread position: | 142-500 |
| Cow position: | chr28:26719105-26719455 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 249 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 126, 79 |
| Conread position: | 142-503 |
| Cow position: | chr28:27659951-27659576 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 18, 207 |
| Conread position: | 144-483 |
| Cow position: | chr28:23621295-23621632 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 144-503 |
| Cow position: | chr28:9822226-9821855 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 146-441 |
| Cow position: | chr28:14218727-14218423 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 227 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 42, 72 |
| Conread position: | 148-490 |
| Cow position: | chr28:34636429-34636767 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 40, 104 |
| Conread position: | 152-503 |
| Cow position: | chr28:11501137-11500769 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 225 |
| Conread position: | 168-494 |
| Cow position: | chr28:11006947-11007306 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 20, 233 |
| Conread position: | 168-503 |
| Cow position: | chr28:4275060-4274729 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 97 |
| Conread position: | 177-503 |
| Cow position: | chr28:15082143-15081807 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 79, 10 |
| Conread position: | 188-487 |
| Cow position: | chr28:4098637-4098929 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 13, 44 |
| Conread position: | 193-448 |
| Cow position: | chr28:26901273-26901014 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 67, 38 |
| Conread position: | 216-488 |
| Cow position: | chr28:21570009-21570290 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 55, 20 |
| Conread position: | 224-503 |
| Cow position: | chr28:6643450-6643168 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 11, 90 |
| Conread position: | 241-503 |
| Cow position: | chr28:4763722-4763994 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 15, 20 |
| Conread position: | 242-503 |
| Cow position: | chr28:33285267-33284995 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 20, 56 |
| Conread position: | 270-503 |
| Cow position: | chr28:12998988-12999209 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 184, 51 |
| Conread position: | 271-490 |
| Cow position: | chr28:22829811-22830027 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 93, 15 |
| Conread position: | 271-503 |
| Cow position: | chr28:5406433-5406666 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 9, 18 |
| Conread position: | 280-503 |
| Cow position: | chr28:13255989-13255760 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 46, 112 |
| Conread position: | 283-503 |
| Cow position: | chr28:1202348-1202130 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 10, 59 |
| Conread position: | 285-503 |
| Cow position: | chr28:9237207-9237428 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 48, 105 |
| Conread position: | 297-500 |
| Cow position: | chr28:7540254-7540046 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 330-488 |
| Cow position: | chr28:11200929-11200785 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 332-491 |
| Cow position: | chr28:4406190-4406347 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 336-503 |
| Cow position: | chr28:20275073-20275243 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 87, 117 |
| Conread position: | 337-503 |
| Cow position: | chr28:19253427-19253594 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 77, 146 |
| Conread position: | 337-503 |
| Cow position: | chr28:31166038-31165868 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 338-503 |
| Cow position: | chr28:11181216-11181047 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 88, 40 |
| Conread position: | 344-503 |
| Cow position: | chr28:6993656-6993502 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
Show alignments to all cow chromosomes.