Cow genome map
| Conread name: | rpfco0129_n4.y1 |
| Conread position: | 4-503 |
| Cow position: | chr29:13553747-13554245 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 15 |
| Conread position: | 5-479 |
| Cow position: | chr29:12901492-12901034 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 38 |
| Conread position: | 5-503 |
| Cow position: | chr29:11365859-11366342 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 64 |
| Conread position: | 6-477 |
| Cow position: | chr29:34736844-34736397 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 65 |
| Conread position: | 6-495 |
| Cow position: | chr29:10154179-10153696 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 65 |
| Conread position: | 6-501 |
| Cow position: | chr29:34700197-34699737 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 28 |
| Conread position: | 6-503 |
| Cow position: | chr29:649871-650382 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 64 |
| Conread position: | 6-503 |
| Cow position: | chr29:18072541-18073047 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 63 |
| Conread position: | 7-441 |
| Cow position: | chr29:21535081-21534627 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 61 |
| Conread position: | 7-495 |
| Cow position: | chr29:17543058-17543540 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 44 |
| Conread position: | 7-503 |
| Cow position: | chr29:12450989-12451482 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 63 |
| Conread position: | 8-469 |
| Cow position: | chr29:38247140-38246668 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 61 |
| Conread position: | 8-496 |
| Cow position: | chr29:32644520-32645012 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 61 |
| Conread position: | 8-502 |
| Cow position: | chr29:18963348-18963841 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 61 |
| Conread position: | 13-503 |
| Cow position: | chr29:22895341-22895835 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 26 |
| Conread position: | 14-491 |
| Cow position: | chr29:1325049-1325535 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 324 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 35, 62 |
| Conread position: | 15-426 |
| Cow position: | chr29:12005153-12004736 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 289 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 39, 61 |
| Conread position: | 15-503 |
| Cow position: | chr29:4367349-4367834 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 54 |
| Conread position: | 16-491 |
| Cow position: | chr29:39567299-39567778 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 53 |
| Conread position: | 27-500 |
| Cow position: | chr29:32655816-32655330 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 42 |
| Conread position: | 29-320 |
| Cow position: | chr29:6014718-6015026 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 187 |
| Conread position: | 29-426 |
| Cow position: | chr29:17467-17081 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 282 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 157, 40 |
| Conread position: | 67-491 |
| Cow position: | chr29:40583460-40583882 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 114, 176 |
| Conread position: | 88-503 |
| Cow position: | chr29:7408205-7407796 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 42 |
| Conread position: | 91-401 |
| Cow position: | chr29:8143920-8144226 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 60, 149 |
| Conread position: | 99-375 |
| Cow position: | chr29:24197933-24197666 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 75, 47 |
| Conread position: | 99-503 |
| Cow position: | chr29:34610027-34609628 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 284 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 28, 48 |
| Conread position: | 110-503 |
| Cow position: | chr29:37961266-37960868 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 38 |
| Conread position: | 121-386 |
| Cow position: | chr29:3502776-3503042 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 30, 65 |
| Conread position: | 129-488 |
| Cow position: | chr29:24604423-24604043 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 39 |
| Conread position: | 135-469 |
| Cow position: | chr29:477838-478181 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 135-491 |
| Cow position: | chr29:31928710-31929083 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 53, 60 |
| Conread position: | 140-495 |
| Cow position: | chr29:9938331-9937983 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 254 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 48, 23 |
| Conread position: | 141-503 |
| Cow position: | chr29:29302917-29302550 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 55 |
| Conread position: | 142-490 |
| Cow position: | chr29:17965695-17966059 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 244 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 32, 174 |
| Conread position: | 142-491 |
| Cow position: | chr29:12784218-12783868 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 6, 205 |
| Conread position: | 142-495 |
| Cow position: | chr29:13634562-13634198 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 46, 59 |
| Conread position: | 142-501 |
| Cow position: | chr29:21924948-21925298 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 256 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 142-503 |
| Cow position: | chr29:18694995-18695359 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 161 |
| Conread position: | 142-503 |
| Cow position: | chr29:26129237-26129602 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 26 |
| Conread position: | 144-481 |
| Cow position: | chr29:41530590-41530936 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 146-491 |
| Cow position: | chr29:26298724-26299065 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 41, 58 |
| Conread position: | 148-503 |
| Cow position: | chr29:2275089-2274732 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 149-500 |
| Cow position: | chr29:356071-356426 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 39, 163 |
| Conread position: | 151-370 |
| Cow position: | chr29:585029-585248 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 153-494 |
| Cow position: | chr29:11787541-11787894 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 58 |
| Conread position: | 164-479 |
| Cow position: | chr29:868531-868859 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 102 |
| Conread position: | 167-489 |
| Cow position: | chr29:17339530-17339211 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 89, 13 |
| Conread position: | 168-491 |
| Cow position: | chr29:4520099-4520432 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 20, 145 |
| Conread position: | 168-491 |
| Cow position: | chr29:39023574-39023242 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 20, 85 |
| Conread position: | 170-503 |
| Cow position: | chr29:19897378-19897717 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 19, 86 |
| Conread position: | 186-424 |
| Cow position: | chr29:463871-463630 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 128 |
| Conread position: | 192-502 |
| Cow position: | chr29:10187848-10188166 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 67, 27 |
| Conread position: | 195-495 |
| Cow position: | chr29:709331-709033 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 42, 175 |
| Conread position: | 210-503 |
| Cow position: | chr29:25924162-25923854 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 288 |
| Conread position: | 215-491 |
| Cow position: | chr29:11054043-11053764 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 41 |
| Conread position: | 219-496 |
| Cow position: | chr29:7663448-7663169 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 52, 28 |
| Conread position: | 230-503 |
| Cow position: | chr29:35442635-35442354 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 34, 128 |
| Conread position: | 236-503 |
| Cow position: | chr29:16055302-16055024 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 206 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 26, 148 |
| Conread position: | 237-502 |
| Cow position: | chr29:41082992-41083255 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 13, 89 |
| Conread position: | 251-503 |
| Cow position: | chr29:11005580-11005843 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 21, 9 |
| Conread position: | 269-503 |
| Cow position: | chr29:942498-942733 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 107 |
| Conread position: | 273-495 |
| Cow position: | chr29:6772007-6772230 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 60, 41 |
| Conread position: | 274-498 |
| Cow position: | chr29:14758987-14758760 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 279-500 |
| Cow position: | chr29:4444596-4444823 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 39, 19 |
| Conread position: | 286-477 |
| Cow position: | chr29:23233336-23233529 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 21, 85 |
| Conread position: | 287-503 |
| Cow position: | chr29:7054308-7054520 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 288-482 |
| Cow position: | chr29:32645361-32645547 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 30, 50 |
| Conread position: | 298-503 |
| Cow position: | chr29:1340681-1340890 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 31, 77 |
| Conread position: | 310-491 |
| Cow position: | chr29:21675307-21675489 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 23, 81 |
| Conread position: | 330-503 |
| Cow position: | chr29:5616938-5616760 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 340-502 |
| Cow position: | chr29:25426713-25426552 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 78, 20 |
| Conread position: | 347-496 |
| Cow position: | chr29:34785261-34785112 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-503 |
| Cow position: | chr29:11766690-11766824 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 21 |
| Conread position: | 372-496 |
| Cow position: | chr29:27285750-27285871 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 382-501 |
| Cow position: | chr29:5964463-5964345 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 383-491 |
| Cow position: | chr29:18067891-18068001 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 399-503 |
| Cow position: | chr29:24323655-24323758 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 85 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
Show alignments to all cow chromosomes.