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Cow genome map

           
Conread name:
           
rpfco0129_n4.y1
        

               
Conread position:
               
1-501
               

               
Cow position:
               
chr3:68342679-68342176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 68
               

               
Conread position:
               
3-482
               

               
Cow position:
               
chr3:44254858-44254374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
6, 67
               

               
Conread position:
               
3-495
               

               
Cow position:
               
chr3:37186419-37186904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 44
               

               
Conread position:
               
3-503
               

               
Cow position:
               
chr3:12255057-12255564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 68
               

               
Conread position:
               
3-503
               

               
Cow position:
               
chr3:51147088-51146585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 68
               

               
Conread position:
               
3-503
               

               
Cow position:
               
chr3:53538097-53538597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 10
               

               
Conread position:
               
5-446
               

               
Cow position:
               
chr3:80818315-80818745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
43, 65
               

               
Conread position:
               
6-303
               

               
Cow position:
               
chr3:66964734-66964414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
97, 63
               

               
Conread position:
               
6-479
               

               
Cow position:
               
chr3:55460914-55460436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
129, 64
               

               
Conread position:
               
6-483
               

               
Cow position:
               
chr3:36174494-36174002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 12
               

               
Conread position:
               
6-489
               

               
Cow position:
               
chr3:38497525-38497993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 63
               

               
Conread position:
               
6-491
               

               
Cow position:
               
chr3:35852889-35852397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 64
               

               
Conread position:
               
6-503
               

               
Cow position:
               
chr3:5420282-5419778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 63
               

               
Conread position:
               
6-503
               

               
Cow position:
               
chr3:51255357-51255865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 31
               

               
Conread position:
               
6-503
               

               
Cow position:
               
chr3:58865891-58865388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 63
               

               
Conread position:
               
6-503
               

               
Cow position:
               
chr3:66738354-66738844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 63
               

               
Conread position:
               
7-494
               

               
Cow position:
               
chr3:33327276-33327786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 62
               

               
Conread position:
               
7-498
               

               
Cow position:
               
chr3:53588810-53588303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 62
               

               
Conread position:
               
7-500
               

               
Cow position:
               
chr3:50614227-50614724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 62
               

               
Conread position:
               
8-315
               

               
Cow position:
               
chr3:75143449-75143137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 36
               

               
Conread position:
               
8-486
               

               
Cow position:
               
chr3:42563038-42563523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 61
               

               
Conread position:
               
8-500
               

               
Cow position:
               
chr3:59608091-59608585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 121
               

               
Conread position:
               
8-503
               

               
Cow position:
               
chr3:23476594-23477076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 61
               

               
Conread position:
               
8-503
               

               
Cow position:
               
chr3:63147576-63147066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 61
               

               
Conread position:
               
8-503
               

               
Cow position:
               
chr3:82473636-82474126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 41
               

               
Conread position:
               
10-502
               

               
Cow position:
               
chr3:58350164-58350656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 59
               

               
Conread position:
               
13-279
               

               
Cow position:
               
chr3:4991150-4990885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
173, 8
               

               
Conread position:
               
13-446
               

               
Cow position:
               
chr3:45215045-45214614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
173, 9
               

               
Conread position:
               
13-491
               

               
Cow position:
               
chr3:61839879-61840349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
175, 56
               

               
Conread position:
               
13-496
               

               
Cow position:
               
chr3:15685320-15684843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 26
               

               
Conread position:
               
14-262
               

               
Cow position:
               
chr3:29171973-29172220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
174, 26
               

               
Conread position:
               
14-480
               

               
Cow position:
               
chr3:16752658-16752196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
242, 54
               

               
Conread position:
               
14-485
               

               
Cow position:
               
chr3:34270523-34270983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
174, 55
               

               
Conread position:
               
14-490
               

               
Cow position:
               
chr3:59001151-59000685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 39
               

               
Conread position:
               
14-491
               

               
Cow position:
               
chr3:31907570-31907070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 55
               

               
Conread position:
               
14-491
               

               
Cow position:
               
chr3:53047052-53046589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 55
               

               
Conread position:
               
14-500
               

               
Cow position:
               
chr3:2506890-2506396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 55
               

               
Conread position:
               
14-503
               

               
Cow position:
               
chr3:20471775-20471279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 23
               

               
Conread position:
               
14-503
               

               
Cow position:
               
chr3:54340822-54340336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 48
               

               
Conread position:
               
15-446
               

               
Cow position:
               
chr3:80082228-80081792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 55
               

               
Conread position:
               
15-491
               

               
Cow position:
               
chr3:79292418-79292902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 54
               

               
Conread position:
               
15-491
               

               
Cow position:
               
chr3:80581267-80581729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
171, 59
               

               
Conread position:
               
28-426
               

               
Cow position:
               
chr3:58766895-58767267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
240, 60
               

               
Conread position:
               
28-447
               

               
Cow position:
               
chr3:19708494-19708079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 41
               

               
Conread position:
               
33-503
               

               
Cow position:
               
chr3:46094438-46094907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 25
               

               
Conread position:
               
38-445
               

               
Cow position:
               
chr3:69849889-69849484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 31
               

               
Conread position:
               
43-487
               

               
Cow position:
               
chr3:50461959-50462406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 89
               

               
Conread position:
               
55-305
               

               
Cow position:
               
chr3:68514919-68514674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
131, 14
               

               
Conread position:
               
55-394
               

               
Cow position:
               
chr3:22021341-22020998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 14
               

               
Conread position:
               
56-430
               

               
Cow position:
               
chr3:38252626-38252993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
132, 13
               

               
Conread position:
               
57-488
               

               
Cow position:
               
chr3:58286265-58285838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 64
               

               
Conread position:
               
57-503
               

               
Cow position:
               
chr3:33633254-33632822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 12
               

               
Conread position:
               
75-500
               

               
Cow position:
               
chr3:36204199-36204635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
16, 10
               

               
Conread position:
               
77-491
               

               
Cow position:
               
chr3:66708421-66707993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 41
               

               
Conread position:
               
78-399
               

               
Cow position:
               
chr3:34316326-34315977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
78-447
               

               
Cow position:
               
chr3:56637311-56637694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
48, 227
               

               
Conread position:
               
90-502
               

               
Cow position:
               
chr3:4222983-4223384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 30
               

               
Conread position:
               
96-491
               

               
Cow position:
               
chr3:17935257-17934864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
40, 143
               

               
Conread position:
               
96-491
               

               
Cow position:
               
chr3:59101505-59101901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
68, 92
               

               
Conread position:
               
97-426
               

               
Cow position:
               
chr3:71246706-71247029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 73
               

               
Conread position:
               
97-491
               

               
Cow position:
               
chr3:55970178-55970580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
91, 67
               

               
Conread position:
               
99-490
               

               
Cow position:
               
chr3:58206778-58206377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
75, 102
               

               
Conread position:
               
104-495
               

               
Cow position:
               
chr3:77224792-77225189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 192
               

               
Conread position:
               
111-480
               

               
Cow position:
               
chr3:78530227-78530605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
112-501
               

               
Cow position:
               
chr3:23092300-23091895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 17
               

               
Conread position:
               
114-503
               

               
Cow position:
               
chr3:27784967-27785352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
32, 52
               

               
Conread position:
               
117-446
               

               
Cow position:
               
chr3:65800286-65800613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
71, 47
               

               
Conread position:
               
122-489
               

               
Cow position:
               
chr3:18573375-18573014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
209, 12
               

               
Conread position:
               
129-486
               

               
Cow position:
               
chr3:45647838-45648200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 125
               

               
Conread position:
               
129-503
               

               
Cow position:
               
chr3:8752502-8752872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 35
               

               
Conread position:
               
130-411
               

               
Cow position:
               
chr3:70333769-70333492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
126, 55
               

               
Conread position:
               
130-495
               

               
Cow position:
               
chr3:36100531-36100912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 364
               

               
Conread position:
               
130-502
               

               
Cow position:
               
chr3:37451772-37452153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 89
               

               
Conread position:
               
130-503
               

               
Cow position:
               
chr3:27532959-27532569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 294
               

               
Conread position:
               
134-500
               

               
Cow position:
               
chr3:48629878-48629506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 118
               

               
Conread position:
               
135-357
               

               
Cow position:
               
chr3:48433655-48433889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
135-484
               

               
Cow position:
               
chr3:58174620-58174971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 74
               

               
Conread position:
               
135-485
               

               
Cow position:
               
chr3:42480333-42480686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 30
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr3:15229110-15228753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
53, 120
               

               
Conread position:
               
135-494
               

               
Cow position:
               
chr3:64172154-64172517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
53, 80
               

               
Conread position:
               
135-500
               

               
Cow position:
               
chr3:54862715-54862336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 260
               

               
Conread position:
               
135-503
               

               
Cow position:
               
chr3:52836193-52835795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 33
               

               
Conread position:
               
135-503
               

               
Cow position:
               
chr3:73956735-73957101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 126
               

               
Conread position:
               
135-503
               

               
Cow position:
               
chr3:82075341-82074978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
11, 93
               

               
Conread position:
               
136-446
               

               
Cow position:
               
chr3:75057405-75057106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
14, 43
               

               
Conread position:
               
136-501
               

               
Cow position:
               
chr3:62292408-62292042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
9, 65
               

               
Conread position:
               
136-503
               

               
Cow position:
               
chr3:31933392-31933014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
137-503
               

               
Cow position:
               
chr3:23111793-23111427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 172
               

               
Conread position:
               
140-477
               

               
Cow position:
               
chr3:26836076-26835755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
48, 34
               

               
Conread position:
               
140-501
               

               
Cow position:
               
chr3:44861594-44861228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 204
               

               
Conread position:
               
140-503
               

               
Cow position:
               
chr3:18458940-18458580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 9
               

               
Conread position:
               
142-260
               

               
Cow position:
               
chr3:49784027-49784146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
142-401
               

               
Cow position:
               
chr3:23944813-23945081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 151
               

               
Conread position:
               
142-409
               

               
Cow position:
               
chr3:45744429-45744689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
44, 109
               

               
Conread position:
               
142-426
               

               
Cow position:
               
chr3:17895570-17895848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
46, 68
               

               
Conread position:
               
142-470
               

               
Cow position:
               
chr3:58130716-58131048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
46, 154
               

               
Conread position:
               
142-474
               

               
Cow position:
               
chr3:74699679-74699326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 62
               

               
Conread position:
               
143-502
               

               
Cow position:
               
chr3:62883919-62884288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 90
               

               
Conread position:
               
144-494
               

               
Cow position:
               
chr3:22271718-22271378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
44, 78
               

               
Conread position:
               
144-495
               

               
Cow position:
               
chr3:8457375-8457732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 13
               

               
Conread position:
               
144-503
               

               
Cow position:
               
chr3:29507314-29507667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
44, 150
               

               
Conread position:
               
145-427
               

               
Cow position:
               
chr3:16343335-16343602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
43, 72
               

               
Conread position:
               
145-436
               

               
Cow position:
               
chr3:22170908-22171205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
145-466
               

               
Cow position:
               
chr3:77467651-77467992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
145-491
               

               
Cow position:
               
chr3:32597209-32596870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
43, 224
               

               
Conread position:
               
145-495
               

               
Cow position:
               
chr3:26493505-26493153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
96, 23
               

               
Conread position:
               
145-503
               

               
Cow position:
               
chr3:23496837-23496492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
99, 34
               

               
Conread position:
               
146-426
               

               
Cow position:
               
chr3:55445087-55445365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 22
               

               
Conread position:
               
146-486
               

               
Cow position:
               
chr3:55124558-55124212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
42, 146
               

               
Conread position:
               
146-491
               

               
Cow position:
               
chr3:16810071-16809740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
40, 112
               

               
Conread position:
               
146-491
               

               
Cow position:
               
chr3:57763943-57764293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
42, 171
               

               
Conread position:
               
146-503
               

               
Cow position:
               
chr3:17284556-17284913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
42, 75
               

               
Conread position:
               
148-421
               

               
Cow position:
               
chr3:56704132-56703851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
40, 199
               

               
Conread position:
               
148-486
               

               
Cow position:
               
chr3:5374057-5374398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
40, 20
               

               
Conread position:
               
156-501
               

               
Cow position:
               
chr3:74611292-74611647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 228
               

               
Conread position:
               
156-503
               

               
Cow position:
               
chr3:8923775-8924126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 25
               

               
Conread position:
               
157-495
               

               
Cow position:
               
chr3:14633255-14632910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
31, 16
               

               
Conread position:
               
160-491
               

               
Cow position:
               
chr3:63238009-63237689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 101
               

               
Conread position:
               
160-503
               

               
Cow position:
               
chr3:1299967-1300301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 60
               

               
Conread position:
               
168-426
               

               
Cow position:
               
chr3:14625646-14625386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
168-430
               

               
Cow position:
               
chr3:7366132-7365880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
92, 64
               

               
Conread position:
               
168-501
               

               
Cow position:
               
chr3:20092763-20092442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
168-503
               

               
Cow position:
               
chr3:4329075-4329405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
20, 113
               

               
Conread position:
               
168-503
               

               
Cow position:
               
chr3:25090801-25091116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
20, 68
               

               
Conread position:
               
168-503
               

               
Cow position:
               
chr3:68262522-68262850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
20, 83
               

               
Conread position:
               
170-501
               

               
Cow position:
               
chr3:41718132-41718475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 75
               

               
Conread position:
               
170-503
               

               
Cow position:
               
chr3:9074579-9074260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 123
               

               
Conread position:
               
174-446
               

               
Cow position:
               
chr3:34937589-34937872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
66, 141
               

               
Conread position:
               
174-480
               

               
Cow position:
               
chr3:18217017-18216706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
72, 129
               

               
Conread position:
               
175-486
               

               
Cow position:
               
chr3:52652325-52652010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
13, 151
               

               
Conread position:
               
186-503
               

               
Cow position:
               
chr3:55992110-55991782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 197
               

               
Conread position:
               
187-490
               

               
Cow position:
               
chr3:71135550-71135859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
65, 187
               

               
Conread position:
               
195-503
               

               
Cow position:
               
chr3:55373805-55373483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
200-500
               

               
Cow position:
               
chr3:3736062-3736382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
41, 13
               

               
Conread position:
               
200-503
               

               
Cow position:
               
chr3:61009661-61009355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
33, 95
               

               
Conread position:
               
203-498
               

               
Cow position:
               
chr3:2198660-2198963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
59, 171
               

               
Conread position:
               
209-478
               

               
Cow position:
               
chr3:15976951-15977242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
212-503
               

               
Cow position:
               
chr3:49132263-49131977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
29, 85
               

               
Conread position:
               
217-502
               

               
Cow position:
               
chr3:55777825-55778118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
26, 97
               

               
Conread position:
               
217-503
               

               
Cow position:
               
chr3:70354447-70354153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
29, 162
               

               
Conread position:
               
218-495
               

               
Cow position:
               
chr3:79376051-79376345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
225-503
               

               
Cow position:
               
chr3:74206010-74205723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
230-439
               

               
Cow position:
               
chr3:46226256-46226477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
32, 8
               

               
Conread position:
               
236-499
               

               
Cow position:
               
chr3:53091311-53091569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
26, 32
               

               
Conread position:
               
236-503
               

               
Cow position:
               
chr3:8790780-8790514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
26, 161
               

               
Conread position:
               
236-503
               

               
Cow position:
               
chr3:50281947-50281666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
20, 144
               

               
Conread position:
               
239-502
               

               
Cow position:
               
chr3:4082281-4082015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 113
               

               
Conread position:
               
239-503
               

               
Cow position:
               
chr3:61322662-61322926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
29, 102
               

               
Conread position:
               
268-472
               

               
Cow position:
               
chr3:55815703-55815904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
19, 6
               

               
Conread position:
               
269-492
               

               
Cow position:
               
chr3:51492630-51492859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
64, 16
               

               
Conread position:
               
272-503
               

               
Cow position:
               
chr3:25250760-25250989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
61, 90
               

               
Conread position:
               
274-491
               

               
Cow position:
               
chr3:74035667-74035468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
279-503
               

               
Cow position:
               
chr3:15221658-15221432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
280-487
               

               
Cow position:
               
chr3:40629925-40629713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 102
               

               
Conread position:
               
280-503
               

               
Cow position:
               
chr3:20158261-20158481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
53, 40
               

               
Conread position:
               
283-503
               

               
Cow position:
               
chr3:11920177-11919951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
50, 201
               

               
Conread position:
               
283-503
               

               
Cow position:
               
chr3:61116995-61116767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
287-503
               

               
Cow position:
               
chr3:39911183-39910973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
290-495
               

               
Cow position:
               
chr3:34675589-34675800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
43, 86
               

               
Conread position:
               
296-503
               

               
Cow position:
               
chr3:14506041-14505829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
307-503
               

               
Cow position:
               
chr3:9629771-9629966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
35, 68
               

               
Conread position:
               
308-475
               

               
Cow position:
               
chr3:37873360-37873516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
322-503
               

               
Cow position:
               
chr3:58632474-58632647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
325-502
               

               
Cow position:
               
chr3:58291987-58291808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
8, 65
               

               
Conread position:
               
335-503
               

               
Cow position:
               
chr3:73436526-73436355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
94, 43
               

               
Conread position:
               
336-495
               

               
Cow position:
               
chr3:58448144-58447987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
337-475
               

               
Cow position:
               
chr3:77981401-77981259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
337-487
               

               
Cow position:
               
chr3:47680037-47679889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
141, 10
               

               
Conread position:
               
337-494
               

               
Cow position:
               
chr3:48271249-48271409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
37, 31
               

               
Conread position:
               
337-503
               

               
Cow position:
               
chr3:18214224-18214050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
32, 47
               

               
Conread position:
               
337-503
               

               
Cow position:
               
chr3:26089085-26088911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
32, 27
               

               
Conread position:
               
337-503
               

               
Cow position:
               
chr3:41550459-41550290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
86, 151
               

               
Conread position:
               
341-503
               

               
Cow position:
               
chr3:24538796-24538958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
357-503
               

               
Cow position:
               
chr3:6690191-6690336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
13, 22
               

               
Conread position:
               
360-503
               

               
Cow position:
               
chr3:5601228-5601080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
367-500
               

               
Cow position:
               
chr3:61411073-61411203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
367-503
               

               
Cow position:
               
chr3:891215-891350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
372-503
               

               
Cow position:
               
chr3:10431555-10431685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
379-503
               

               
Cow position:
               
chr3:25076209-25076081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
384-501
               

               
Cow position:
               
chr3:22953916-22953800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
394-503
               

               
Cow position:
               
chr3:5844896-5845005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.