Cow genome map
| Conread name: | rpfco0129_n4.y1 |
| Conread position: | 1-431 |
| Cow position: | chr9:3724632-3725068 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 68 |
| Conread position: | 1-503 |
| Cow position: | chr9:5071184-5071681 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 68 |
| Conread position: | 2-491 |
| Cow position: | chr9:50080616-50081109 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 68 |
| Conread position: | 3-372 |
| Cow position: | chr9:26555771-26556150 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 277 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 12, 47 |
| Conread position: | 3-427 |
| Cow position: | chr9:11849945-11849519 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 296 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 6, 67 |
| Conread position: | 3-472 |
| Cow position: | chr9:41317526-41318022 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 329 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 9, 67 |
| Conread position: | 3-486 |
| Cow position: | chr9:20416086-20416571 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 332 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 3-495 |
| Cow position: | chr9:34092983-34093504 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 17 |
| Conread position: | 3-503 |
| Cow position: | chr9:21462417-21462946 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 36 |
| Conread position: | 5-427 |
| Cow position: | chr9:27892207-27892629 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 287 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 60, 68 |
| Conread position: | 5-481 |
| Cow position: | chr9:28948278-28947803 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 13 |
| Conread position: | 5-486 |
| Cow position: | chr9:30477356-30477839 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 320 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 153, 64 |
| Conread position: | 6-291 |
| Cow position: | chr9:5341057-5340768 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 63 |
| Conread position: | 6-426 |
| Cow position: | chr9:20960858-20961279 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 37 |
| Conread position: | 6-486 |
| Cow position: | chr9:12356265-12355795 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 64 |
| Conread position: | 6-502 |
| Cow position: | chr9:38546826-38546339 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 63 |
| Conread position: | 6-502 |
| Cow position: | chr9:48773749-48773270 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 63 |
| Conread position: | 6-503 |
| Cow position: | chr9:11870630-11870127 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 49 |
| Conread position: | 6-503 |
| Cow position: | chr9:14185112-14184585 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 64 |
| Conread position: | 6-503 |
| Cow position: | chr9:15950717-15951237 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 63 |
| Conread position: | 6-503 |
| Cow position: | chr9:20038736-20039210 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 63 |
| Conread position: | 6-503 |
| Cow position: | chr9:32265970-32266468 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 63 |
| Conread position: | 6-503 |
| Cow position: | chr9:39428390-39428880 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 63 |
| Conread position: | 6-503 |
| Cow position: | chr9:62763610-62763121 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 37 |
| Conread position: | 7-403 |
| Cow position: | chr9:8612720-8612302 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 25 |
| Conread position: | 8-491 |
| Cow position: | chr9:214040-214529 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 61 |
| Conread position: | 8-491 |
| Cow position: | chr9:52633087-52633559 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 61 |
| Conread position: | 8-503 |
| Cow position: | chr9:18110452-18110944 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 24 |
| Conread position: | 8-503 |
| Cow position: | chr9:29808884-29808374 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 61 |
| Conread position: | 8-503 |
| Cow position: | chr9:34204554-34204049 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 61 |
| Conread position: | 8-503 |
| Cow position: | chr9:34310457-34309948 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 61 |
| Conread position: | 8-503 |
| Cow position: | chr9:47926328-47925843 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 61 |
| Conread position: | 9-503 |
| Cow position: | chr9:3932389-3931882 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 62 |
| Conread position: | 9-503 |
| Cow position: | chr9:3959472-3958986 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 60 |
| Conread position: | 10-469 |
| Cow position: | chr9:10355136-10355581 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 311 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 9, 39 |
| Conread position: | 11-503 |
| Cow position: | chr9:54205907-54206405 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 21 |
| Conread position: | 13-502 |
| Cow position: | chr9:56861428-56860936 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 20 |
| Conread position: | 14-283 |
| Cow position: | chr9:47390014-47389745 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 172, 56 |
| Conread position: | 14-487 |
| Cow position: | chr9:8534269-8534756 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 55 |
| Conread position: | 14-487 |
| Cow position: | chr9:28726314-28726789 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 55 |
| Conread position: | 14-490 |
| Cow position: | chr9:30402000-30402493 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 323 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 94, 55 |
| Conread position: | 14-491 |
| Cow position: | chr9:10308593-10309065 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 18 |
| Conread position: | 14-499 |
| Cow position: | chr9:10127254-10127743 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 57 |
| Conread position: | 14-503 |
| Cow position: | chr9:19382740-19382250 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 29 |
| Conread position: | 14-503 |
| Cow position: | chr9:43037910-43037402 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 17 |
| Conread position: | 15-452 |
| Cow position: | chr9:1951854-1952299 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 54 |
| Conread position: | 21-491 |
| Cow position: | chr9:42445565-42446052 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 334 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 118, 10 |
| Conread position: | 23-486 |
| Cow position: | chr9:59386372-59386834 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 46 |
| Conread position: | 27-260 |
| Cow position: | chr9:23858948-23858712 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 74, 42 |
| Conread position: | 27-472 |
| Cow position: | chr9:30440194-30440655 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 324 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 99, 48 |
| Conread position: | 28-490 |
| Cow position: | chr9:41958382-41958853 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 326 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 99, 42 |
| Conread position: | 35-495 |
| Cow position: | chr9:3169123-3169596 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 34 |
| Conread position: | 51-284 |
| Cow position: | chr9:17785079-17785318 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 88, 18 |
| Conread position: | 54-491 |
| Cow position: | chr9:56253278-56252832 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 15 |
| Conread position: | 55-491 |
| Cow position: | chr9:34957676-34958125 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 131, 14 |
| Conread position: | 57-399 |
| Cow position: | chr9:18002578-18002926 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 131, 12 |
| Conread position: | 57-468 |
| Cow position: | chr9:23527427-23527831 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 16 |
| Conread position: | 72-478 |
| Cow position: | chr9:48856700-48856297 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 76-490 |
| Cow position: | chr9:11830364-11829939 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 10 |
| Conread position: | 77-446 |
| Cow position: | chr9:38344250-38343867 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 260 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 97, 241 |
| Conread position: | 79-491 |
| Cow position: | chr9:43871325-43870906 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 138 |
| Conread position: | 88-421 |
| Cow position: | chr9:7390208-7390531 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 88-503 |
| Cow position: | chr9:18093316-18093723 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 302 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 14, 135 |
| Conread position: | 88-503 |
| Cow position: | chr9:39152343-39152760 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 128 |
| Conread position: | 90-489 |
| Cow position: | chr9:54924973-54924553 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 18 |
| Conread position: | 93-491 |
| Cow position: | chr9:25469354-25468987 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 275 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 240, 84 |
| Conread position: | 99-500 |
| Cow position: | chr9:44218094-44217697 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 69 |
| Conread position: | 101-491 |
| Cow position: | chr9:52484590-52484983 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 88, 53 |
| Conread position: | 107-503 |
| Cow position: | chr9:30020302-30019900 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 293 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 30 |
| Conread position: | 117-487 |
| Cow position: | chr9:9957137-9956759 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 139 |
| Conread position: | 130-479 |
| Cow position: | chr9:16745976-16745617 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 132-498 |
| Cow position: | chr9:32371460-32371827 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 214 |
| Conread position: | 134-491 |
| Cow position: | chr9:17871808-17872179 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 134-503 |
| Cow position: | chr9:35708328-35708699 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 134-503 |
| Cow position: | chr9:50544335-50544717 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 269 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 55, 117 |
| Conread position: | 135-400 |
| Cow position: | chr9:27052036-27052314 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 53, 220 |
| Conread position: | 135-426 |
| Cow position: | chr9:8951199-8950905 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 53, 33 |
| Conread position: | 135-476 |
| Cow position: | chr9:50295727-50296087 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 53, 33 |
| Conread position: | 135-485 |
| Cow position: | chr9:14961245-14960885 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 53, 38 |
| Conread position: | 135-491 |
| Cow position: | chr9:55084000-55084370 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 53, 179 |
| Conread position: | 135-503 |
| Cow position: | chr9:58669675-58669301 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 13 |
| Conread position: | 136-447 |
| Cow position: | chr9:38692242-38692559 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 50, 188 |
| Conread position: | 136-503 |
| Cow position: | chr9:10666729-10667104 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 32 |
| Conread position: | 136-503 |
| Cow position: | chr9:42172904-42173266 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 52, 30 |
| Conread position: | 141-466 |
| Cow position: | chr9:52787245-52787582 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 141-476 |
| Cow position: | chr9:34468302-34468632 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 47, 58 |
| Conread position: | 142-446 |
| Cow position: | chr9:9416117-9416418 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 46, 114 |
| Conread position: | 142-468 |
| Cow position: | chr9:51311960-51311628 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 142-486 |
| Cow position: | chr9:4861679-4861319 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 254 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 44, 22 |
| Conread position: | 142-503 |
| Cow position: | chr9:11102533-11102880 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 271 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 44, 55 |
| Conread position: | 143-495 |
| Cow position: | chr9:43912218-43911857 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 174 |
| Conread position: | 144-501 |
| Cow position: | chr9:11201867-11201511 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 71 |
| Conread position: | 144-503 |
| Cow position: | chr9:59924829-59924471 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 24 |
| Conread position: | 145-378 |
| Cow position: | chr9:18072831-18073066 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 123, 165 |
| Conread position: | 146-475 |
| Cow position: | chr9:5029801-5029457 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 276 |
| Conread position: | 147-501 |
| Cow position: | chr9:64007577-64007960 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 269 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 41, 73 |
| Conread position: | 148-494 |
| Cow position: | chr9:37098950-37099307 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 262 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 38, 20 |
| Conread position: | 150-438 |
| Cow position: | chr9:31587815-31588118 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 150-477 |
| Cow position: | chr9:58853798-58853456 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 23, 125 |
| Conread position: | 151-496 |
| Cow position: | chr9:32625279-32624934 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 50 |
| Conread position: | 152-500 |
| Cow position: | chr9:58204943-58204595 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 252 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 36, 16 |
| Conread position: | 153-501 |
| Cow position: | chr9:44108551-44108912 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 256 |
| Conread position: | 156-375 |
| Cow position: | chr9:26828545-26828772 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 31, 191 |
| Conread position: | 168-426 |
| Cow position: | chr9:29108801-29108537 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 197 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 20, 44 |
| Conread position: | 168-502 |
| Cow position: | chr9:20839878-20839549 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 151 |
| Conread position: | 168-503 |
| Cow position: | chr9:2113739-2114087 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 180 |
| Conread position: | 168-503 |
| Cow position: | chr9:23043039-23042697 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 169-491 |
| Cow position: | chr9:18206264-18206574 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 228 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 17, 76 |
| Conread position: | 170-400 |
| Cow position: | chr9:847657-847889 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 173 |
| Conread position: | 170-491 |
| Cow position: | chr9:38846087-38846402 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 92 |
| Conread position: | 170-503 |
| Cow position: | chr9:8657172-8657511 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 243 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 19, 138 |
| Conread position: | 171-449 |
| Cow position: | chr9:24399424-24399707 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 17, 175 |
| Conread position: | 171-494 |
| Cow position: | chr9:44553008-44552675 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 202 |
| Conread position: | 174-447 |
| Cow position: | chr9:58979659-58979377 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 57 |
| Conread position: | 176-489 |
| Cow position: | chr9:25922079-25921755 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 12, 23 |
| Conread position: | 192-503 |
| Cow position: | chr9:15006512-15006829 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 153 |
| Conread position: | 193-491 |
| Cow position: | chr9:11319394-11319703 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 121 |
| Conread position: | 200-477 |
| Cow position: | chr9:8618023-8617761 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 202-503 |
| Cow position: | chr9:32816905-32817222 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 213-501 |
| Cow position: | chr9:11364111-11363818 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 224 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 214-503 |
| Cow position: | chr9:15684571-15684867 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 70, 20 |
| Conread position: | 215-494 |
| Cow position: | chr9:27292068-27292350 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 221-489 |
| Cow position: | chr9:9315511-9315239 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 31, 41 |
| Conread position: | 221-503 |
| Cow position: | chr9:20897102-20896822 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 85, 28 |
| Conread position: | 230-499 |
| Cow position: | chr9:46242063-46242334 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 32, 144 |
| Conread position: | 230-503 |
| Cow position: | chr9:10980915-10981193 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 14, 74 |
| Conread position: | 230-503 |
| Cow position: | chr9:32848092-32847809 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 71 |
| Conread position: | 231-478 |
| Cow position: | chr9:48133929-48133678 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 31, 167 |
| Conread position: | 234-503 |
| Cow position: | chr9:42037850-42037572 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 16, 57 |
| Conread position: | 236-495 |
| Cow position: | chr9:32115418-32115672 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 20, 24 |
| Conread position: | 244-503 |
| Cow position: | chr9:5575506-5575235 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 18, 77 |
| Conread position: | 244-503 |
| Cow position: | chr9:34106909-34106633 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 19, 116 |
| Conread position: | 258-503 |
| Cow position: | chr9:64105112-64104862 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 259-503 |
| Cow position: | chr9:35368809-35368564 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 9, 71 |
| Conread position: | 259-503 |
| Cow position: | chr9:41957973-41957726 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 9, 35 |
| Conread position: | 269-486 |
| Cow position: | chr9:11303921-11304140 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 269-503 |
| Cow position: | chr9:46252967-46252743 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 272-502 |
| Cow position: | chr9:3845063-3845286 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 63, 89 |
| Conread position: | 279-475 |
| Cow position: | chr9:58698962-58699168 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 279-503 |
| Cow position: | chr9:5172479-5172252 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 39, 160 |
| Conread position: | 279-503 |
| Cow position: | chr9:24837676-24837457 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 145, 57 |
| Conread position: | 282-503 |
| Cow position: | chr9:15034049-15033828 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 51, 158 |
| Conread position: | 284-503 |
| Cow position: | chr9:6203653-6203867 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 291-488 |
| Cow position: | chr9:20389003-20389196 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 99, 13 |
| Conread position: | 292-503 |
| Cow position: | chr9:50827799-50828003 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 37, 90 |
| Conread position: | 298-503 |
| Cow position: | chr9:33059153-33059352 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 300-503 |
| Cow position: | chr9:18237043-18237237 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 302-503 |
| Cow position: | chr9:16118845-16118648 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 127, 34 |
| Conread position: | 308-497 |
| Cow position: | chr9:23943395-23943205 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 115, 28 |
| Conread position: | 309-498 |
| Cow position: | chr9:49651841-49651652 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 60 |
| Conread position: | 336-503 |
| Cow position: | chr9:21956805-21956643 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 337-478 |
| Cow position: | chr9:50522263-50522399 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 337-501 |
| Cow position: | chr9:40007945-40007783 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 337-503 |
| Cow position: | chr9:5340692-5340532 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 90, 29 |
| Conread position: | 337-503 |
| Cow position: | chr9:17110858-17110693 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 337-503 |
| Cow position: | chr9:20200380-20200212 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 86, 26 |
| Conread position: | 337-503 |
| Cow position: | chr9:34725424-34725590 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 89, 110 |
| Conread position: | 347-503 |
| Cow position: | chr9:38927158-38927003 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 106, 30 |
| Conread position: | 348-501 |
| Cow position: | chr9:43926036-43926188 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 361-503 |
| Cow position: | chr9:36827764-36827618 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 396-502 |
| Cow position: | chr9:8591139-8591036 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
Show alignments to all cow chromosomes.