Cow genome map

Conread name: rpfco0129_n4.y1

Conread position: 1-503
Cow position: chrX:1978120-1978644 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 74

Conread position: 2-495
Cow position: chrX:35288287-35288784 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 67

Conread position: 3-495
Cow position: chrX:15049099-15049616 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 67

Conread position: 3-500
Cow position: chrX:19878666-19879172 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 342
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 6, 35

Conread position: 4-482
Cow position: chrX:11674688-11675182 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 34

Conread position: 5-425
Cow position: chrX:43408631-43409063 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 285
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 145, 64

Conread position: 5-479
Cow position: chrX:1616421-1615930 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 64

Conread position: 5-481
Cow position: chrX:31261001-31260499 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 64

Conread position: 5-485
Cow position: chrX:18695291-18694811 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 64

Conread position: 5-491
Cow position: chrX:2300561-2301049 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 64

Conread position: 5-491
Cow position: chrX:20801407-20801894 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 65

Conread position: 5-495
Cow position: chrX:39125950-39126455 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 347
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 103, 64

Conread position: 5-503
Cow position: chrX:23414752-23414239 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 64

Conread position: 5-503
Cow position: chrX:36840497-36841000 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 64

Conread position: 6-393
Cow position: chrX:33827400-33826992 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 37

Conread position: 6-475
Cow position: chrX:3161385-3160925 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 63

Conread position: 6-494
Cow position: chrX:28111129-28111637 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 27

Conread position: 6-503
Cow position: chrX:630662-630173 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 60

Conread position: 6-503
Cow position: chrX:32309732-32310243 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 63

Conread position: 6-503
Cow position: chrX:33803384-33802871 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 63

Conread position: 8-398
Cow position: chrX:2648723-2648323 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 263
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 79, 165

Conread position: 8-423
Cow position: chrX:48247200-48246795 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 279
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 125, 61

Conread position: 8-479
Cow position: chrX:3154616-3154130 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 24

Conread position: 8-491
Cow position: chrX:39546340-39545857 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 61

Conread position: 8-503
Cow position: chrX:2786913-2786420 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 65

Conread position: 8-503
Cow position: chrX:10301978-10302478 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 35

Conread position: 8-503
Cow position: chrX:11561775-11562283 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 62

Conread position: 8-503
Cow position: chrX:25419527-25419017 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 61

Conread position: 9-490
Cow position: chrX:35633119-35632633 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 59

Conread position: 13-424
Cow position: chrX:40827108-40826698 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 269
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 175, 8

Conread position: 13-486
Cow position: chrX:151536-152021 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 59

Conread position: 13-491
Cow position: chrX:17743708-17744181 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 56

Conread position: 14-427
Cow position: chrX:12309749-12309330 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 55

Conread position: 14-446
Cow position: chrX:44054443-44054881 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 303
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 25, 49

Conread position: 14-458
Cow position: chrX:31250031-31250479 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 54

Conread position: 14-486
Cow position: chrX:161067-161533 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 55

Conread position: 14-486
Cow position: chrX:15147542-15147076 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 23

Conread position: 14-486
Cow position: chrX:34564939-34565405 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 56

Conread position: 14-490
Cow position: chrX:29289215-29289701 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 55

Conread position: 14-503
Cow position: chrX:15329292-15329779 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 55

Conread position: 15-426
Cow position: chrX:1810520-1810105 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 28

Conread position: 15-503
Cow position: chrX:32743178-32743670 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 53

Conread position: 16-486
Cow position: chrX:28866348-28865885 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 53

Conread position: 17-491
Cow position: chrX:36010250-36009788 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 52

Conread position: 18-401
Cow position: chrX:17271645-17271251 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 25

Conread position: 18-503
Cow position: chrX:28787014-28787483 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 35

Conread position: 20-503
Cow position: chrX:47743723-47744224 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 28

Conread position: 22-487
Cow position: chrX:31443173-31442707 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 47

Conread position: 27-494
Cow position: chrX:48248473-48248950 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 43

Conread position: 28-437
Cow position: chrX:25232239-25232659 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 42

Conread position: 43-480
Cow position: chrX:10412319-10411872 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 27

Conread position: 45-445
Cow position: chrX:5638498-5638091 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 282
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 142, 24

Conread position: 55-491
Cow position: chrX:9161268-9161700 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 14

Conread position: 55-503
Cow position: chrX:25337857-25338324 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 14

Conread position: 58-503
Cow position: chrX:30162680-30163142 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 11

Conread position: 60-500
Cow position: chrX:25713494-25713929 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 9

Conread position: 75-477
Cow position: chrX:20376669-20377081 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 54

Conread position: 75-486
Cow position: chrX:11314079-11313665 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 93

Conread position: 75-490
Cow position: chrX:30133625-30133195 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 280
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 113, 143

Conread position: 75-503
Cow position: chrX:5047198-5046780 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 111

Conread position: 81-324
Cow position: chrX:6607114-6607377 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 183
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 65, 108

Conread position: 90-356
Cow position: chrX:48195327-48195049 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 188
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 98, 227

Conread position: 92-476
Cow position: chrX:21815977-21816378 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 267
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 17, 9

Conread position: 96-412
Cow position: chrX:40647698-40648027 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 240
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 92, 72

Conread position: 99-486
Cow position: chrX:35413353-35413731 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 280
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 39, 138

Conread position: 99-503
Cow position: chrX:6675202-6674778 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 299
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 47, 66

Conread position: 101-459
Cow position: chrX:158044-157685 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 247
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 143, 62

Conread position: 103-503
Cow position: chrX:7496972-7497376 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 64

Conread position: 110-393
Cow position: chrX:488224-488517 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 58

Conread position: 123-491
Cow position: chrX:7721730-7722113 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 256
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 26, 230

Conread position: 127-494
Cow position: chrX:13323250-13322862 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 272
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 8, 134

Conread position: 128-495
Cow position: chrX:9041476-9041115 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 260
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 58, 16

Conread position: 130-485
Cow position: chrX:25571242-25570875 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 13

Conread position: 130-503
Cow position: chrX:28579974-28580357 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 261
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 5, 244

Conread position: 135-290
Cow position: chrX:36154813-36154652 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 135-503
Cow position: chrX:18287293-18286940 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 15

Conread position: 135-503
Cow position: chrX:27176561-27176176 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 193

Conread position: 135-503
Cow position: chrX:40788962-40789340 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 175

Conread position: 136-313
Cow position: chrX:6639884-6640069 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 136-503
Cow position: chrX:17631044-17630664 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 34

Conread position: 137-446
Cow position: chrX:27680164-27680477 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 212
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 51, 31

Conread position: 137-503
Cow position: chrX:6041435-6041072 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 259
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 5, 32

Conread position: 140-427
Cow position: chrX:8517640-8517928 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 209
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 48, 60

Conread position: 140-434
Cow position: chrX:40116189-40116484 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 203
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 121, 40

Conread position: 140-503
Cow position: chrX:16284183-16283806 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 80

Conread position: 141-476
Cow position: chrX:22074565-22074903 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 231
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 51, 173

Conread position: 142-424
Cow position: chrX:9953907-9954192 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 196
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 46, 176

Conread position: 142-424
Cow position: chrX:23970155-23970432 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 192
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 46, 26

Conread position: 142-426
Cow position: chrX:9855066-9855353 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 194
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 50, 176

Conread position: 142-478
Cow position: chrX:23514252-23513905 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 247
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 71, 174

Conread position: 142-480
Cow position: chrX:32623349-32623685 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 228
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 45, 12

Conread position: 142-494
Cow position: chrX:22624247-22624604 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 241
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 46, 62

Conread position: 142-495
Cow position: chrX:40692972-40692622 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 253
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 46, 73

Conread position: 142-495
Cow position: chrX:42011046-42011410 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 26

Conread position: 142-497
Cow position: chrX:24132385-24132020 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 233

Conread position: 142-502
Cow position: chrX:7425230-7425601 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 167

Conread position: 142-502
Cow position: chrX:29032183-29032544 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 26

Conread position: 142-503
Cow position: chrX:2029156-2029522 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 266
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 46, 31

Conread position: 142-503
Cow position: chrX:6563278-6563656 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 60

Conread position: 142-503
Cow position: chrX:27287953-27287600 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 31

Conread position: 145-495
Cow position: chrX:32431396-32431753 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 254
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 62, 53

Conread position: 145-503
Cow position: chrX:18456161-18456537 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 349

Conread position: 147-502
Cow position: chrX:11746613-11746965 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 21

Conread position: 147-503
Cow position: chrX:21664952-21664584 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 21

Conread position: 148-399
Cow position: chrX:4482734-4482993 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 184
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 40, 206

Conread position: 151-503
Cow position: chrX:15305513-15305159 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 254
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 37, 53

Conread position: 151-503
Cow position: chrX:41083700-41084052 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 256
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 40, 57

Conread position: 152-503
Cow position: chrX:17042466-17042819 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 219

Conread position: 154-491
Cow position: chrX:1503117-1503452 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 237
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 33, 14

Conread position: 154-500
Cow position: chrX:46073044-46072683 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 241
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 20, 162

Conread position: 155-491
Cow position: chrX:23091660-23091996 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 240
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 33, 139

Conread position: 160-478
Cow position: chrX:41560455-41560154 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 97

Conread position: 161-503
Cow position: chrX:20792033-20791678 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 243
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 30, 186

Conread position: 166-485
Cow position: chrX:8917643-8917961 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 98

Conread position: 168-427
Cow position: chrX:2186050-2186310 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 20, 125

Conread position: 168-503
Cow position: chrX:26940700-26940381 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 240
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 20, 92

Conread position: 173-406
Cow position: chrX:17908487-17908253 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 15, 87

Conread position: 173-495
Cow position: chrX:31340501-31340839 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 194

Conread position: 174-412
Cow position: chrX:28836103-28835861 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 174
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 68, 86

Conread position: 174-494
Cow position: chrX:18216074-18216395 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 230
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 14, 135

Conread position: 181-503
Cow position: chrX:47177959-47178281 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 221
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 62, 20

Conread position: 187-469
Cow position: chrX:2764681-2764964 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 197
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 77, 49

Conread position: 199-425
Cow position: chrX:8913743-8913977 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 44, 0

Conread position: 199-425
Cow position: chrX:8915487-8915721 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 44, 0

Conread position: 199-437
Cow position: chrX:46029158-46028917 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 179
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 53, 36

Conread position: 200-356
Cow position: chrX:30005093-30005254 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 62, 112

Conread position: 200-490
Cow position: chrX:29680436-29680138 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 209
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 31, 113

Conread position: 200-495
Cow position: chrX:16514440-16514138 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 218

Conread position: 200-503
Cow position: chrX:6479829-6480114 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 212
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 69, 19

Conread position: 200-503
Cow position: chrX:38999668-38999985 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 18

Conread position: 213-503
Cow position: chrX:23666960-23667258 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 204
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 51, 191

Conread position: 215-482
Cow position: chrX:45633410-45633672 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 189
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 55, 38

Conread position: 217-503
Cow position: chrX:25388396-25388108 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 157

Conread position: 220-503
Cow position: chrX:25193505-25193794 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 207
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 42, 156

Conread position: 222-411
Cow position: chrX:29055966-29056158 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 42, 120

Conread position: 231-503
Cow position: chrX:39415514-39415233 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 202
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 19, 147

Conread position: 236-479
Cow position: chrX:21566263-21566520 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 181
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 25, 0

Conread position: 239-427
Cow position: chrX:18417725-18417534 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 146
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 23, 141

Conread position: 242-503
Cow position: chrX:41070804-41071067 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 195
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 19, 113

Conread position: 250-495
Cow position: chrX:27771699-27771450 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 178
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 33, 231

Conread position: 255-427
Cow position: chrX:26493753-26493577 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 13, 5

Conread position: 255-487
Cow position: chrX:40642869-40643099 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 179
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 13, 184

Conread position: 269-447
Cow position: chrX:27450100-27449918 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 64, 81

Conread position: 269-503
Cow position: chrX:18142556-18142317 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 184
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 128

Conread position: 270-482
Cow position: chrX:6656286-6656498 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 162
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 63, 26

Conread position: 270-494
Cow position: chrX:25441091-25440875 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 63, 18

Conread position: 273-490
Cow position: chrX:20011318-20011532 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 171
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 13, 36

Conread position: 274-503
Cow position: chrX:19678363-19678138 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 172
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 59, 122

Conread position: 278-503
Cow position: chrX:12725645-12725865 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 92

Conread position: 282-497
Cow position: chrX:7344999-7345214 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 169
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 36, 6

Conread position: 288-495
Cow position: chrX:26619190-26618989 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 43, 85

Conread position: 289-503
Cow position: chrX:9839145-9839361 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 17, 32

Conread position: 291-490
Cow position: chrX:17635064-17635255 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 291-503
Cow position: chrX:22326039-22326256 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 27, 84

Conread position: 295-503
Cow position: chrX:39097444-39097646 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 25, 71

Conread position: 325-500
Cow position: chrX:7806381-7806558 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 100, 15

Conread position: 329-503
Cow position: chrX:46083933-46084109 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 103, 25

Conread position: 337-503
Cow position: chrX:9539293-9539459 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 134
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 30, 37

Conread position: 337-503
Cow position: chrX:21640394-21640562 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 135
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 32, 0

Conread position: 337-503
Cow position: chrX:48089436-48089268 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 39, 49

Conread position: 338-502
Cow position: chrX:34355997-34355839 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 129
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 40, 0

Conread position: 346-503
Cow position: chrX:31602634-31602794 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 77, 15

Conread position: 366-503
Cow position: chrX:23179284-23179142 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 22, 6

Conread position: 373-503
Cow position: chrX:159753-159623 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 98
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 373-503
Cow position: chrX:16419153-16419283 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 373-503
Cow position: chrX:34470720-34470850 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 109
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 19, 42

Conread position: 392-503
Cow position: chrX:4446731-4446842 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 94
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.