Cow genome map

Conread name: rpfco0133_f4.y1

Conread position: 1-361
Cow position: chr17:22473237-22473594 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 240
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 316, 26

Conread position: 2-286
Cow position: chr17:22498822-22498538 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 195
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 2-287
Cow position: chr17:22551775-22551490 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 195
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 2-350
Cow position: chr17:22499242-22498894 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-359
Cow position: chr17:22473319-22473676 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 310

Conread position: 2-359
Cow position: chr17:22499158-22498801 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-360
Cow position: chr17:22551859-22551501 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 197

Conread position: 2-362
Cow position: chr17:22452144-22451783 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 235
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 356, 0

Conread position: 2-362
Cow position: chr17:22452228-22451868 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 248

Conread position: 2-362
Cow position: chr17:22452312-22451952 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 332, 328

Conread position: 2-362
Cow position: chr17:22473571-22473932 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 63

Conread position: 2-362
Cow position: chr17:22499074-22498714 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 236
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 66, 59

Conread position: 2-362
Cow position: chr17:22499326-22498966 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-362
Cow position: chr17:22551943-22551583 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-362
Cow position: chr17:22552027-22551667 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-362
Cow position: chr17:22552111-22551751 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 165

Conread position: 2-362
Cow position: chr17:22552195-22551835 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 81

Conread position: 2-362
Cow position: chr17:22552279-22551919 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-362
Cow position: chr17:22552447-22552087 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 81

Conread position: 2-362
Cow position: chr17:22552867-22552507 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 81

Conread position: 2-362
Cow position: chr17:22553035-22552675 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 333, 328

Conread position: 2-362
Cow position: chr17:22589949-22589589 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 167

Conread position: 3-362
Cow position: chr17:22473488-22473847 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 62

Conread position: 3-362
Cow position: chr17:22552782-22552423 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 75

Conread position: 3-362
Cow position: chr17:22589612-22589253 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 228
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 62, 58

Conread position: 4-357
Cow position: chr17:22452058-22451705 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 78

Conread position: 4-362
Cow position: chr17:22473405-22473763 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 140

Conread position: 4-362
Cow position: chr17:22552697-22552339 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 74

Conread position: 4-362
Cow position: chr17:22553117-22552759 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 235
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 159, 163

Conread position: 4-362
Cow position: chr17:22589779-22589421 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 237
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 158, 163

Conread position: 4-362
Cow position: chr17:22590115-22589757 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 241
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 139, 148

Conread position: 4-362
Cow position: chr17:22590199-22589841 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-362
Cow position: chr17:22590283-22589925 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 235
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 222, 233

Conread position: 5-360
Cow position: chr17:22589526-22589173 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 231
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 156, 162

Conread position: 6-362
Cow position: chr17:22552527-22552171 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 240

Conread position: 6-362
Cow position: chr17:22590029-22589673 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 253

Conread position: 8-362
Cow position: chr17:22473163-22473511 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 236
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 13, 7

Conread position: 9-362
Cow position: chr17:22452389-22452036 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-362
Cow position: chr17:22498982-22498630 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-362
Cow position: chr17:22552355-22552003 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 68

Conread position: 10-362
Cow position: chr17:22552607-22552255 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 148

Conread position: 14-361
Cow position: chr17:22499398-22499051 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 67-362
Cow position: chr17:22590304-22590009 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 201
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 81-343
Cow position: chr17:22452401-22452139 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 194
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 9, 14

Conread position: 83-362
Cow position: chr17:22553122-22552843 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 176
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 163-362
Cow position: chr17:22499417-22499218 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 139
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 11

Show alignments to all cow chromosomes.