Cow genome map
| Conread name: | rpfco0133_f4.y1 |
| Conread position: | 1-362 |
| Cow position: | chr23:24535894-24535533 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-362 |
| Cow position: | chr23:24547179-24546818 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 145 |
| Conread position: | 2-209 |
| Cow position: | chr23:24626544-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 2-276 |
| Cow position: | chr23:25626767-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 70, 56 |
| Conread position: | 2-286 |
| Cow position: | chr23:25723975-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 248, 243 |
| Conread position: | 2-314 |
| Cow position: | chr23:24522500-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 228 |
| Conread position: | 2-347 |
| Cow position: | chr23:25626599-25626944 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 223 |
| Conread position: | 2-348 |
| Cow position: | chr23:25698420-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 97, 112 |
| Conread position: | 2-349 |
| Cow position: | chr23:25698672-25698325 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 57 |
| Conread position: | 2-351 |
| Cow position: | chr23:24547010-24546661 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 144 |
| Conread position: | 2-359 |
| Cow position: | chr23:24535809-24535452 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 221 |
| Conread position: | 2-360 |
| Cow position: | chr23:24560486-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chr23:24547094-24546734 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 144 |
| Conread position: | 2-362 |
| Cow position: | chr23:24547262-24546902 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 144 |
| Conread position: | 2-362 |
| Cow position: | chr23:24560570-24560210 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chr23:24560654-24560294 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chr23:24626376-24626735 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 228 |
| Conread position: | 2-362 |
| Cow position: | chr23:24639368-24639728 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 21 |
| Conread position: | 2-362 |
| Cow position: | chr23:24639620-24639980 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chr23:24639704-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chr23:25626014-25626374 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 235 |
| Conread position: | 2-362 |
| Cow position: | chr23:25626098-25626458 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chr23:25626266-25626623 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 0 |
| Conread position: | 2-362 |
| Cow position: | chr23:25698588-25698228 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 280 |
| Conread position: | 3-348 |
| Cow position: | chr23:25724058-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 75 |
| Conread position: | 3-356 |
| Cow position: | chr23:24654102-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 331 |
| Conread position: | 3-362 |
| Cow position: | chr23:24535976-24535617 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-362 |
| Cow position: | chr23:24560821-24560462 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-361 |
| Cow position: | chr23:25660389-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-362 |
| Cow position: | chr23:24639286-24639644 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 103 |
| Conread position: | 4-362 |
| Cow position: | chr23:24639454-24639812 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-362 |
| Cow position: | chr23:25698502-25698144 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 237 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 179, 196 |
| Conread position: | 5-362 |
| Cow position: | chr23:24560903-24560546 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-348 |
| Cow position: | chr23:25626186-25626528 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 148 |
| Conread position: | 8-361 |
| Cow position: | chr23:24522825-24522477 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 10-362 |
| Cow position: | chr23:24522576-24522224 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 144 |
| Conread position: | 10-362 |
| Cow position: | chr23:25660311-25660663 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 81 |
| Conread position: | 12-359 |
| Cow position: | chr23:25660145-25660492 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 241 |
| Conread position: | 12-362 |
| Cow position: | chr23:24626302-24626652 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-362 |
| Cow position: | chr23:24547329-24546986 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 211 |
| Conread position: | 19-362 |
| Cow position: | chr23:25626535-25626875 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 51 |
| Conread position: | 22-362 |
| Cow position: | chr23:24536041-24535701 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-362 |
| Cow position: | chr23:24560718-24560378 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-348 |
| Cow position: | chr23:24521972-24521653 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 110, 123 |
| Conread position: | 27-361 |
| Cow position: | chr23:24654042-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 223 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-362 |
| Cow position: | chr23:24639226-24639560 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 163 |
| Conread position: | 30-361 |
| Cow position: | chr23:25625958-25626289 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 40-362 |
| Cow position: | chr23:25724105-25723783 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 118 |
| Conread position: | 68-362 |
| Cow position: | chr23:24626274-24626568 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 97-362 |
| Cow position: | chr23:25660146-25660411 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 244, 240 |
| Conread position: | 111-362 |
| Cow position: | chr23:24654042-24654293 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 122-362 |
| Cow position: | chr23:25724107-25723867 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 129, 124 |
| Conread position: | 153-362 |
| Cow position: | chr23:24547364-24547154 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 181-347 |
| Cow position: | chr23:24536050-24535884 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.