Cow genome map
| Conread name: | rpfco0133_f4.y1 |
| Conread position: | 1-140 |
| Cow position: | chr25:23420701-23420840 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-223 |
| Cow position: | chr25:34433002-34433224 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-142 |
| Cow position: | chr25:34433087-34433227 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-196 |
| Cow position: | chr25:327074-327268 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 131, 137 |
| Conread position: | 2-263 |
| Cow position: | chr25:34769469-34769208 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 141, 156 |
| Conread position: | 2-277 |
| Cow position: | chr25:326990-327265 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 80, 68 |
| Conread position: | 2-281 |
| Cow position: | chr25:346515-346794 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 119, 125 |
| Conread position: | 2-289 |
| Cow position: | chr25:33127953-33128240 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-314 |
| Cow position: | chr25:18642188-18641873 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 119, 247 |
| Conread position: | 2-337 |
| Cow position: | chr25:22235980-22236315 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 159, 143 |
| Conread position: | 2-349 |
| Cow position: | chr25:36801610-36801957 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-353 |
| Cow position: | chr25:34447593-34447933 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 2-357 |
| Cow position: | chr25:33127869-33128224 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 310 |
| Conread position: | 2-357 |
| Cow position: | chr25:33145081-33145436 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 60, 90 |
| Conread position: | 2-360 |
| Cow position: | chr25:23420450-23420808 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-360 |
| Cow position: | chr25:33299218-33299576 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 165, 146 |
| Conread position: | 2-360 |
| Cow position: | chr25:34447257-34447615 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 238 |
| Conread position: | 2-361 |
| Cow position: | chr25:34769637-34769278 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chr25:33157154-33156794 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 162 |
| Conread position: | 2-362 |
| Cow position: | chr25:33157322-33156962 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 156 |
| Conread position: | 2-362 |
| Cow position: | chr25:33157406-33157046 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 145 |
| Conread position: | 2-362 |
| Cow position: | chr25:33298390-33298738 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 71, 57 |
| Conread position: | 2-362 |
| Cow position: | chr25:33298714-33299074 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 60 |
| Conread position: | 2-362 |
| Cow position: | chr25:33298882-33299242 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 140, 144 |
| Conread position: | 2-362 |
| Cow position: | chr25:33298966-33299326 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 244 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 45, 71 |
| Conread position: | 2-362 |
| Cow position: | chr25:33299050-33299410 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 229, 235 |
| Conread position: | 2-362 |
| Cow position: | chr25:33305335-33304979 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 246 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 294, 17 |
| Conread position: | 2-362 |
| Cow position: | chr25:33305417-33305064 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 148, 13 |
| Conread position: | 2-362 |
| Cow position: | chr25:34447005-34447365 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chr25:34447341-34447701 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chr25:34713849-34714209 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 152, 156 |
| Conread position: | 2-362 |
| Cow position: | chr25:34714101-34714461 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chr25:34769721-34769361 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chr25:34769973-34769613 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chr25:34770057-34769697 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chr25:34770141-34769781 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 2-362 |
| Cow position: | chr25:36800950-36801310 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 161, 165 |
| Conread position: | 3-343 |
| Cow position: | chr25:23420535-23420875 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-362 |
| Cow position: | chr25:33157237-33156878 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 155 |
| Conread position: | 4-263 |
| Cow position: | chr25:23420620-23420879 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 138, 149 |
| Conread position: | 4-264 |
| Cow position: | chr25:34732035-34731775 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 58 |
| Conread position: | 4-349 |
| Cow position: | chr25:33299472-33299817 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 229 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 158, 163 |
| Conread position: | 4-358 |
| Cow position: | chr25:34447091-34447445 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-360 |
| Cow position: | chr25:33305813-33305460 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 54, 65 |
| Conread position: | 4-360 |
| Cow position: | chr25:34447511-34447858 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 85, 90 |
| Conread position: | 4-362 |
| Cow position: | chr25:33145002-33145357 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 4-362 |
| Cow position: | chr25:33299136-33299494 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 54, 58 |
| Conread position: | 4-362 |
| Cow position: | chr25:34769803-34769445 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-362 |
| Cow position: | chr25:36801528-36801886 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-349 |
| Cow position: | chr25:34714189-34714532 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 76, 65 |
| Conread position: | 6-362 |
| Cow position: | chr25:33127789-33128145 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-362 |
| Cow position: | chr25:34769884-34769529 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 139 |
| Conread position: | 8-362 |
| Cow position: | chr25:33127707-33128061 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-362 |
| Cow position: | chr25:36801448-36801802 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 234 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 74, 65 |
| Conread position: | 10-362 |
| Cow position: | chr25:34447181-34447533 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 314 |
| Conread position: | 12-359 |
| Cow position: | chr25:34732615-34732268 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 230 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 222, 218 |
| Conread position: | 12-362 |
| Cow position: | chr25:23420376-23420726 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-343 |
| Cow position: | chr25:326494-326821 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 151, 138 |
| Conread position: | 16-362 |
| Cow position: | chr25:33157476-33157130 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-347 |
| Cow position: | chr25:366725-367053 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 231, 226 |
| Conread position: | 19-348 |
| Cow position: | chr25:34732104-34731775 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 114, 132 |
| Conread position: | 19-362 |
| Cow position: | chr25:33298479-33298822 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 87, 79 |
| Conread position: | 19-362 |
| Cow position: | chr25:36800799-36801142 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 123, 127 |
| Conread position: | 21-362 |
| Cow position: | chr25:33298565-33298906 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 37, 58 |
| Conread position: | 21-362 |
| Cow position: | chr25:36800633-36800974 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 37, 58 |
| Conread position: | 22-350 |
| Cow position: | chr25:34714037-34714365 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-362 |
| Cow position: | chr25:346454-346791 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 118, 140 |
| Conread position: | 40-362 |
| Cow position: | chr25:23420320-23420642 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 273 |
| Conread position: | 67-307 |
| Cow position: | chr25:34432984-34433224 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 95, 100 |
| Conread position: | 67-362 |
| Cow position: | chr25:36801339-36801634 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 183, 163 |
| Conread position: | 77-359 |
| Cow position: | chr25:33305426-33305147 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 85, 22 |
| Conread position: | 80-362 |
| Cow position: | chr25:34770147-34769865 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 81-361 |
| Cow position: | chr25:326985-327265 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 86, 73 |
| Conread position: | 81-362 |
| Cow position: | chr25:22235891-22236172 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 87, 64 |
| Conread position: | 92-358 |
| Cow position: | chr25:34446927-34447193 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 67, 56 |
| Conread position: | 103-362 |
| Cow position: | chr25:366725-366984 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 56, 43 |
| Conread position: | 103-362 |
| Cow position: | chr25:34732104-34731845 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 114, 132 |
| Conread position: | 123-362 |
| Cow position: | chr25:23420319-23420558 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 158-360 |
| Cow position: | chr25:34433495-34433694 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 163-361 |
| Cow position: | chr25:33305424-33305229 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 166-362 |
| Cow position: | chr25:326986-327182 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 85, 72 |
| Conread position: | 166-362 |
| Cow position: | chr25:33157494-33157298 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 181-362 |
| Cow position: | chr25:34732614-34732433 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 233-361 |
| Cow position: | chr25:18642209-18642081 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.