Cow genome map
| Conread name: | rpfco0133_f4.y1 |
| Conread position: | 1-362 |
| Cow position: | chr28:11334155-11333794 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-194 |
| Cow position: | chr28:9290485-9290677 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 63, 58 |
| Conread position: | 2-277 |
| Cow position: | chr28:9299288-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 242, 224 |
| Conread position: | 2-303 |
| Cow position: | chr28:9298884-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 2-311 |
| Cow position: | chr28:34679493-34679181 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 141, 109 |
| Conread position: | 2-315 |
| Cow position: | chr28:9290319-9290630 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 2-349 |
| Cow position: | chr28:7757987-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 230 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-349 |
| Cow position: | chr28:34696231-34696578 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 93, 75 |
| Conread position: | 2-358 |
| Cow position: | chr28:9289901-9290257 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 142, 66 |
| Conread position: | 2-358 |
| Cow position: | chr28:9289984-9290339 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 58, 139 |
| Conread position: | 2-360 |
| Cow position: | chr28:7758475-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 0 |
| Conread position: | 2-360 |
| Cow position: | chr28:9253254-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 144 |
| Conread position: | 2-362 |
| Cow position: | chr28:7757399-7757759 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 140, 150 |
| Conread position: | 2-362 |
| Cow position: | chr28:7757483-7757843 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chr28:7757651-7758011 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 134 |
| Conread position: | 2-362 |
| Cow position: | chr28:7757735-7758095 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chr28:7757819-7758179 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 225 |
| Conread position: | 2-362 |
| Cow position: | chr28:7757903-7758263 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 60 |
| Conread position: | 2-362 |
| Cow position: | chr28:7758391-7758751 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chr28:7810415-7810766 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 2-362 |
| Cow position: | chr28:9252917-9253278 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 151 |
| Conread position: | 2-362 |
| Cow position: | chr28:9253086-9253446 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 144 |
| Conread position: | 2-362 |
| Cow position: | chr28:9253170-9253530 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 144 |
| Conread position: | 2-362 |
| Cow position: | chr28:9289823-9290179 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 51, 45 |
| Conread position: | 2-362 |
| Cow position: | chr28:11333986-11333626 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 234 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chr28:11334070-11333710 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chr28:34696147-34696507 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 82, 68 |
| Conread position: | 4-290 |
| Cow position: | chr28:7810660-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-351 |
| Cow position: | chr28:11333816-11333469 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 329, 318 |
| Conread position: | 4-361 |
| Cow position: | chr28:9298803-9299157 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 4-362 |
| Cow position: | chr28:9253004-9253362 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 226 |
| Conread position: | 4-362 |
| Cow position: | chr28:9299052-9299396 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 10-362 |
| Cow position: | chr28:7810582-7810934 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 229 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-362 |
| Cow position: | chr28:9298643-9298992 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 145, 24 |
| Conread position: | 10-362 |
| Cow position: | chr28:34696071-34696423 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 74, 67 |
| Conread position: | 18-362 |
| Cow position: | chr28:33210227-33210572 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 235 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 140, 129 |
| Conread position: | 19-362 |
| Cow position: | chr28:7758324-7758667 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 132, 127 |
| Conread position: | 26-362 |
| Cow position: | chr28:34673362-34673698 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 117, 141 |
| Conread position: | 40-362 |
| Cow position: | chr28:7810528-7810850 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 50, 55 |
| Conread position: | 64-362 |
| Cow position: | chr28:7757378-7757675 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 172, 7 |
| Conread position: | 105-362 |
| Cow position: | chr28:7757334-7757591 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 58, 49 |
| Conread position: | 110-362 |
| Cow position: | chr28:34673362-34673614 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 37, 48 |
Show alignments to all cow chromosomes.