Cow genome map

Conread name: rpfco0133_f4.y1

Conread position: 1-229
Cow position: chr7:11434505-11434277 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 163
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 73, 57

Conread position: 1-270
Cow position: chr7:8325891-8326163 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 198
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 78, 70

Conread position: 1-309
Cow position: chr7:8243285-8243592 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 210
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 87, 57

Conread position: 1-312
Cow position: chr7:8243452-8243763 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 206
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 71, 57

Conread position: 1-312
Cow position: chr7:8243788-8244096 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 216
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 83, 57

Conread position: 1-351
Cow position: chr7:8325807-8326160 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 57

Conread position: 1-359
Cow position: chr7:11601205-11600847 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 242
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 59, 71

Conread position: 1-360
Cow position: chr7:1439619-1439979 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 233
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 78, 21

Conread position: 1-361
Cow position: chr7:11434904-11434558 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 236
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 72, 57

Conread position: 1-362
Cow position: chr7:1014837-1015198 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 156

Conread position: 1-362
Cow position: chr7:8242865-8243226 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 233
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 82, 70

Conread position: 1-362
Cow position: chr7:8242949-8243310 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 230
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 75, 57

Conread position: 1-362
Cow position: chr7:8243620-8243981 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 244
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 57, 72

Conread position: 1-362
Cow position: chr7:8243704-8244063 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 233
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 309, 292

Conread position: 1-362
Cow position: chr7:8277326-8277687 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 235
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 78, 70

Conread position: 1-362
Cow position: chr7:8277410-8277771 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 229
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 81, 70

Conread position: 1-362
Cow position: chr7:8277578-8277939 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 239
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 81, 63

Conread position: 1-362
Cow position: chr7:8324967-8325328 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 247
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 74, 57

Conread position: 1-362
Cow position: chr7:8325303-8325664 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 57

Conread position: 1-362
Cow position: chr7:8325555-8325916 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 239
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 81, 73

Conread position: 1-362
Cow position: chr7:8325639-8326000 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 249
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 81, 70

Conread position: 1-362
Cow position: chr7:18390060-18390421 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 74

Conread position: 1-362
Cow position: chr7:42879378-42879017 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 237
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 230, 238

Conread position: 2-142
Cow position: chr7:1440125-1440265 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 2-276
Cow position: chr7:3180604-3180877 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 194
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 224, 193

Conread position: 2-308
Cow position: chr7:18390481-18390787 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 211
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 141, 156

Conread position: 2-309
Cow position: chr7:1439958-1440264 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 214
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 160, 13

Conread position: 2-349
Cow position: chr7:1439453-1439802 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 236
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 232, 134

Conread position: 2-360
Cow position: chr7:18390397-18390755 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 237
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 2-360
Cow position: chr7:42878621-42878263 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-362
Cow position: chr7:1014670-1015030 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 156

Conread position: 2-362
Cow position: chr7:1014754-1015114 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 165

Conread position: 2-362
Cow position: chr7:1015006-1015366 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-362
Cow position: chr7:1015090-1015450 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-362
Cow position: chr7:1438316-1438676 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 220
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 2-362
Cow position: chr7:3179764-3180124 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-362
Cow position: chr7:3179932-3180292 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 148

Conread position: 2-362
Cow position: chr7:3180016-3180376 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 165

Conread position: 2-362
Cow position: chr7:3180268-3180628 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 136

Conread position: 2-362
Cow position: chr7:11600868-11600508 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 62

Conread position: 2-362
Cow position: chr7:18390229-18390589 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-362
Cow position: chr7:42878957-42878597 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-362
Cow position: chr7:42879125-42878765 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-263
Cow position: chr7:11600699-11600439 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 174
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 62, 57

Conread position: 3-362
Cow position: chr7:1014257-1014616 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-362
Cow position: chr7:1439875-1440233 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 96

Conread position: 3-362
Cow position: chr7:3179849-3180208 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-362
Cow position: chr7:8278336-8278687 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 227
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 80, 48

Conread position: 3-362
Cow position: chr7:18390314-18390673 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 57

Conread position: 4-308
Cow position: chr7:1015176-1015482 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 209
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 283, 0

Conread position: 4-312
Cow position: chr7:8243204-8243511 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 206
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 70, 47

Conread position: 4-355
Cow position: chr7:11600782-11600430 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 295

Conread position: 4-361
Cow position: chr7:3180438-3180795 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 89

Conread position: 4-362
Cow position: chr7:1014426-1014778 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 239
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 149, 163

Conread position: 4-362
Cow position: chr7:3180102-3180460 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 302

Conread position: 4-362
Cow position: chr7:3180186-3180544 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 219

Conread position: 4-362
Cow position: chr7:3180354-3180712 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 145

Conread position: 4-362
Cow position: chr7:8277917-8278275 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 248
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 81, 50

Conread position: 4-362
Cow position: chr7:8278001-8278359 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 240
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 78, 64

Conread position: 4-362
Cow position: chr7:8278253-8278609 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 227
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 78, 64

Conread position: 4-362
Cow position: chr7:11601118-11600760 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 56

Conread position: 4-362
Cow position: chr7:18390147-18390505 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-362
Cow position: chr7:42878787-42878429 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 65

Conread position: 4-362
Cow position: chr7:42878871-42878513 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 163

Conread position: 5-310
Cow position: chr7:8324887-8325192 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 215
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 77, 59

Conread position: 5-362
Cow position: chr7:42879206-42878849 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 77

Conread position: 6-362
Cow position: chr7:1014512-1014862 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 239
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 60, 55

Conread position: 6-362
Cow position: chr7:1014926-1015282 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 68

Conread position: 8-362
Cow position: chr7:42879287-42878933 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-287
Cow position: chr7:8278091-8278368 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 192
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 64, 48

Conread position: 10-347
Cow position: chr7:1438240-1438577 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 204
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 30, 52

Conread position: 10-361
Cow position: chr7:8325732-8326083 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 253
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 65, 50

Conread position: 10-362
Cow position: chr7:8277671-8278023 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 231
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 240, 223

Conread position: 11-286
Cow position: chr7:11434824-11434549 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 180
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 71, 49

Conread position: 12-362
Cow position: chr7:8243379-8243729 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 239
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 62, 46

Conread position: 16-309
Cow position: chr7:1438414-1438707 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 185
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 33, 46

Conread position: 19-362
Cow position: chr7:8324817-8325160 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 235
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 124, 147

Conread position: 20-362
Cow position: chr7:18389995-18390337 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 219
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 21-312
Cow position: chr7:8324735-8325026 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 197
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 58, 37

Conread position: 54-360
Cow position: chr7:1014224-1014530 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 198
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 54-362
Cow position: chr7:1438200-1438508 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 189
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 35, 40

Conread position: 55-362
Cow position: chr7:3179648-3179956 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 203
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 7, 48

Conread position: 56-362
Cow position: chr7:11601234-11600928 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 211
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 87, 102

Conread position: 73-361
Cow position: chr7:1014657-1014945 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 195
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 82-314
Cow position: chr7:11434508-11434276 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 154
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 99-308
Cow position: chr7:8277256-8277465 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 69, 54

Conread position: 105-362
Cow position: chr7:8324735-8324992 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 166
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 226, 212

Show alignments to all cow chromosomes.