Cow genome map
| Conread name: | rpfco0133_f4.y1 |
| Conread position: | 1-362 |
| Cow position: | chrX:12627671-12628032 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 85, 64 |
| Conread position: | 1-362 |
| Cow position: | chrX:25310124-25310485 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 164 |
| Conread position: | 2-205 |
| Cow position: | chrX:29044857-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-212 |
| Cow position: | chrX:25310377-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 67 |
| Conread position: | 2-277 |
| Cow position: | chrX:25324512-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 148, 136 |
| Conread position: | 2-286 |
| Cow position: | chrX:29044941-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 148, 136 |
| Conread position: | 2-298 |
| Cow position: | chrX:29045676-29045380 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-353 |
| Cow position: | chrX:14181323-14180972 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-361 |
| Cow position: | chrX:25324764-25324405 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 340 |
| Conread position: | 2-361 |
| Cow position: | chrX:25325184-25324825 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 165 |
| Conread position: | 2-361 |
| Cow position: | chrX:25325688-25325329 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 47 |
| Conread position: | 2-362 |
| Cow position: | chrX:25309957-25310317 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 241 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 81, 69 |
| Conread position: | 2-362 |
| Cow position: | chrX:25324848-25324488 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 154 |
| Conread position: | 2-362 |
| Cow position: | chrX:25324932-25324572 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chrX:25325016-25324656 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chrX:25325268-25324908 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-362 |
| Cow position: | chrX:25325520-25325160 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 165 |
| Conread position: | 2-362 |
| Cow position: | chrX:29045193-29044833 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 312 |
| Conread position: | 3-362 |
| Cow position: | chrX:25309790-25310149 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 322 |
| Conread position: | 3-362 |
| Cow position: | chrX:25325435-25325076 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-310 |
| Cow position: | chrX:12627340-12627645 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 60, 86 |
| Conread position: | 4-311 |
| Cow position: | chrX:12627591-12627897 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 166, 58 |
| Conread position: | 4-349 |
| Cow position: | chrX:29045758-29045413 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-360 |
| Cow position: | chrX:25324678-25324322 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-360 |
| Cow position: | chrX:29045023-29044667 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 226 |
| Conread position: | 4-361 |
| Cow position: | chrX:25310211-25310568 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 4-362 |
| Cow position: | chrX:25309707-25310065 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 60 |
| Conread position: | 4-362 |
| Cow position: | chrX:25325098-25324740 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-362 |
| Cow position: | chrX:29045107-29044749 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-362 |
| Cow position: | chrX:29045356-29045001 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 66, 39 |
| Conread position: | 5-309 |
| Cow position: | chrX:12627759-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 138, 154 |
| Conread position: | 6-361 |
| Cow position: | chrX:25324592-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 235 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 154, 161 |
| Conread position: | 6-362 |
| Cow position: | chrX:25325768-25325412 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 48 |
| Conread position: | 6-362 |
| Cow position: | chrX:29045273-29044917 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-362 |
| Cow position: | chrX:25325598-25325244 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 159 |
| Conread position: | 9-362 |
| Cow position: | chrX:29045837-29045484 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 64, 50 |
| Conread position: | 22-362 |
| Cow position: | chrX:25325837-25325496 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 5, 41 |
| Conread position: | 34-357 |
| Cow position: | chrX:13826933-13826610 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 55-362 |
| Cow position: | chrX:25325887-25325580 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 56, 49 |
| Conread position: | 75-362 |
| Cow position: | chrX:29045855-29045568 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 81-362 |
| Cow position: | chrX:12627333-12627613 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 95, 81 |
| Conread position: | 81-362 |
| Cow position: | chrX:25309700-25309981 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 61, 71 |
Show alignments to all cow chromosomes.