Cow genome map

Conread name: rpfco0140_i1.y1

Conread position: 1-116
Cow position: chr12:25820548-25820662 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 31, 74

Conread position: 1-143
Cow position: chr12:6164143-6164285 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 7, 54

Conread position: 1-145
Cow position: chr12:44517854-44517993 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 39, 67

Conread position: 1-146
Cow position: chr12:10895668-10895807 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 75, 15

Conread position: 1-146
Cow position: chr12:26223102-26223244 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 43, 55

Conread position: 1-146
Cow position: chr12:31228455-31228315 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 55, 0

Conread position: 1-293
Cow position: chr12:21393586-21393316 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 206
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 60, 0

Conread position: 1-390
Cow position: chr12:36501063-36501420 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 281
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 30, 71

Conread position: 2-134
Cow position: chr12:29995580-29995708 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 2-139
Cow position: chr12:28213398-28213266 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 2-142
Cow position: chr12:9465574-9465715 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 35, 74

Conread position: 2-142
Cow position: chr12:29969460-29969321 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 38, 21

Conread position: 2-144
Cow position: chr12:15240844-15240981 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 2-144
Cow position: chr12:31841322-31841180 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 38, 72

Conread position: 2-144
Cow position: chr12:33323615-33323756 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 105
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 2-144
Cow position: chr12:42167528-42167388 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 2-144
Cow position: chr12:42181258-42181398 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 2-145
Cow position: chr12:3510447-3510305 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 70, 0

Conread position: 2-145
Cow position: chr12:18577726-18577591 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 2-145
Cow position: chr12:46143704-46143563 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 29, 68

Conread position: 2-146
Cow position: chr12:941517-941373 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 34, 72

Conread position: 2-146
Cow position: chr12:3076736-3076882 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 74

Conread position: 2-146
Cow position: chr12:3950465-3950610 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 30, 73

Conread position: 2-146
Cow position: chr12:3994836-3994690 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 35, 74

Conread position: 2-146
Cow position: chr12:4134551-4134405 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 121
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 35, 71

Conread position: 2-146
Cow position: chr12:4866702-4866555 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 45, 50

Conread position: 2-146
Cow position: chr12:5714508-5714369 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 66, 0

Conread position: 2-146
Cow position: chr12:5905934-5905798 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 2-146
Cow position: chr12:5940228-5940084 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 34, 61

Conread position: 2-146
Cow position: chr12:8710706-8710572 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 2-146
Cow position: chr12:8943338-8943479 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 30, 72

Conread position: 2-146
Cow position: chr12:9229602-9229741 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 64, 0

Conread position: 2-146
Cow position: chr12:12017760-12017617 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 34, 67

Conread position: 2-146
Cow position: chr12:12178802-12178662 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 64, 0

Conread position: 2-146
Cow position: chr12:12976297-12976445 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 106, 70

Conread position: 2-146
Cow position: chr12:17001142-17000999 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 70, 0

Conread position: 2-146
Cow position: chr12:17008084-17007938 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 87, 9

Conread position: 2-146
Cow position: chr12:17702348-17702492 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 14, 39

Conread position: 2-146
Cow position: chr12:19508685-19508831 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 35, 74

Conread position: 2-146
Cow position: chr12:24755146-24755283 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 18, 0

Conread position: 2-146
Cow position: chr12:25320802-25320664 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 66, 0

Conread position: 2-146
Cow position: chr12:25561250-25561111 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 2-146
Cow position: chr12:25805230-25805369 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 2-146
Cow position: chr12:26782768-26782622 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 35, 74

Conread position: 2-146
Cow position: chr12:28804876-28804734 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 2-146
Cow position: chr12:29411609-29411748 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 2-146
Cow position: chr12:29484011-29484149 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 102, 27

Conread position: 2-146
Cow position: chr12:30662067-30662209 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 40, 70

Conread position: 2-146
Cow position: chr12:32169421-32169277 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 72

Conread position: 2-146
Cow position: chr12:34007187-34007040 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 30, 75

Conread position: 2-146
Cow position: chr12:34148469-34148610 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 2-146
Cow position: chr12:34385633-34385773 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 55

Conread position: 2-146
Cow position: chr12:35218524-35218664 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 32, 64

Conread position: 2-146
Cow position: chr12:40158358-40158499 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 38, 67

Conread position: 2-146
Cow position: chr12:40307578-40307437 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 70, 0

Conread position: 2-146
Cow position: chr12:40910409-40910550 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 92, 64

Conread position: 2-146
Cow position: chr12:41091416-41091270 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 30, 74

Conread position: 2-146
Cow position: chr12:42282953-42283096 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 33, 71

Conread position: 2-147
Cow position: chr12:19691354-19691498 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 115, 72

Conread position: 2-147
Cow position: chr12:20326654-20326510 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 70, 0

Conread position: 2-147
Cow position: chr12:26868914-26869059 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 38, 72

Conread position: 2-147
Cow position: chr12:41214442-41214582 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 66, 0

Conread position: 2-150
Cow position: chr12:5635567-5635711 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 64, 0

Conread position: 2-150
Cow position: chr12:18766098-18766244 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 2-153
Cow position: chr12:32391729-32391579 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 128
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 59, 0

Conread position: 2-153
Cow position: chr12:39465462-39465312 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 2-159
Cow position: chr12:29161933-29162083 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 33, 54

Conread position: 2-169
Cow position: chr12:6226770-6226927 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 133
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 31, 58

Conread position: 2-208
Cow position: chr12:6720203-6719994 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 141, 70

Conread position: 2-230
Cow position: chr12:24032885-24032660 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 158
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 146, 64

Conread position: 2-238
Cow position: chr12:6410852-6411071 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 175
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 176, 44

Conread position: 2-245
Cow position: chr12:27562949-27563195 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 173
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 30, 76

Conread position: 2-291
Cow position: chr12:37993843-37994142 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 216
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 146, 15

Conread position: 2-301
Cow position: chr12:28011019-28011289 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 220
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 65, 0

Conread position: 2-304
Cow position: chr12:1848654-1848946 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 211
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 143, 70

Conread position: 2-312
Cow position: chr12:31532528-31532814 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 226
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 46, 0

Conread position: 2-323
Cow position: chr12:3880372-3880664 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 226
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 70, 0

Conread position: 2-330
Cow position: chr12:33458025-33457711 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 221
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 162, 64

Conread position: 2-338
Cow position: chr12:8868997-8869319 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 70

Conread position: 2-343
Cow position: chr12:41083949-41083620 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 233
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 71, 0

Conread position: 2-396
Cow position: chr12:28582624-28582990 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 274
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 172, 51

Conread position: 2-396
Cow position: chr12:47929097-47928736 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 266
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 30, 62

Conread position: 2-397
Cow position: chr12:5658189-5658579 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 274
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 37, 72

Conread position: 2-403
Cow position: chr12:11498182-11498579 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 273
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 14, 68

Conread position: 2-424
Cow position: chr12:15530938-15530537 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 278
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 191, 68

Conread position: 2-433
Cow position: chr12:2711376-2710967 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 301
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 30, 69

Conread position: 2-435
Cow position: chr12:19420049-19420465 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 311
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 49, 60

Conread position: 2-448
Cow position: chr12:3579164-3578751 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 302
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 182, 71

Conread position: 2-466
Cow position: chr12:25455999-25455518 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 72

Conread position: 2-477
Cow position: chr12:18769193-18769680 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 64

Conread position: 2-489
Cow position: chr12:28650835-28650333 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 55

Conread position: 2-500
Cow position: chr12:15938386-15938839 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 2-505
Cow position: chr12:31218340-31217836 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 56

Conread position: 2-535
Cow position: chr12:17031495-17030985 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 389, 53

Conread position: 2-547
Cow position: chr12:24440699-24440174 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 61

Conread position: 2-574
Cow position: chr12:2242004-2242556 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 395, 25

Conread position: 2-583
Cow position: chr12:19866122-19865573 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 386, 44

Conread position: 2-583
Cow position: chr12:20479443-20480018 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 30

Conread position: 2-583
Cow position: chr12:35368521-35367957 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 65

Conread position: 2-583
Cow position: chr12:37770756-37770208 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 387, 68

Conread position: 2-586
Cow position: chr12:41159474-41158897 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 9

Conread position: 3-127
Cow position: chr12:15163029-15162909 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 115, 53

Conread position: 3-133
Cow position: chr12:24211297-24211170 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 3-134
Cow position: chr12:19372224-19372353 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 3-144
Cow position: chr12:27803167-27803307 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 69, 0

Conread position: 3-145
Cow position: chr12:36954495-36954633 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 117
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 40, 65

Conread position: 3-145
Cow position: chr12:45160625-45160770 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 29, 74

Conread position: 3-146
Cow position: chr12:8921904-8922048 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 34, 72

Conread position: 3-146
Cow position: chr12:18123565-18123427 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 3-146
Cow position: chr12:18421044-18421186 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 70, 0

Conread position: 3-146
Cow position: chr12:30438124-30437991 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 3-146
Cow position: chr12:39486312-39486170 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 70, 0

Conread position: 3-146
Cow position: chr12:44766961-44766825 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 3-147
Cow position: chr12:41580997-41580853 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 85

Conread position: 3-149
Cow position: chr12:23154581-23154729 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 28, 67

Conread position: 3-212
Cow position: chr12:21922316-21922111 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 32, 67

Conread position: 3-329
Cow position: chr12:7109071-7108761 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 249
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 5, 68

Conread position: 3-337
Cow position: chr12:6241191-6240882 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 240
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 30, 0

Conread position: 3-345
Cow position: chr12:44595932-44596247 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 232
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 64, 29

Conread position: 3-386
Cow position: chr12:42966877-42966530 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 3-551
Cow position: chr12:37123390-37122871 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 379, 38

Conread position: 3-558
Cow position: chr12:9143276-9142751 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 386, 70

Conread position: 4-133
Cow position: chr12:23574647-23574524 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 4-143
Cow position: chr12:18388404-18388538 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 62, 0

Conread position: 4-146
Cow position: chr12:5800913-5800776 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 31, 63

Conread position: 4-146
Cow position: chr12:32714922-32714783 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 69, 0

Conread position: 4-146
Cow position: chr12:42698344-42698482 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 69

Conread position: 5-144
Cow position: chr12:40110263-40110132 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 35, 52

Conread position: 5-146
Cow position: chr12:19502539-19502679 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 68, 0

Conread position: 6-348
Cow position: chr12:48415644-48415971 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 237
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 326, 27

Conread position: 6-368
Cow position: chr12:6210281-6210617 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 257
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 61, 0

Conread position: 7-146
Cow position: chr12:5135019-5134880 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 104
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 87, 66

Conread position: 7-146
Cow position: chr12:17495316-17495451 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 25, 66

Conread position: 7-146
Cow position: chr12:30745591-30745454 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 72, 0

Conread position: 10-303
Cow position: chr12:4004859-4004555 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 214
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 29, 64

Conread position: 10-342
Cow position: chr12:17708593-17708254 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 243
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 23, 64

Conread position: 12-145
Cow position: chr12:18572512-18572383 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 27, 56

Conread position: 15-145
Cow position: chr12:31925520-31925392 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 43

Conread position: 17-149
Cow position: chr12:17486270-17486398 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 112
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 11, 52

Conread position: 18-219
Cow position: chr12:44013969-44014170 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 144
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 14, 58

Conread position: 19-146
Cow position: chr12:30605289-30605415 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 21-146
Cow position: chr12:35771167-35771291 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 24-145
Cow position: chr12:18937249-18937129 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 55, 0

Conread position: 28-583
Cow position: chr12:18943792-18944320 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 44

Conread position: 29-149
Cow position: chr12:3055994-3055876 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 30-316
Cow position: chr12:44743345-44743065 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 192
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 43, 0

Conread position: 33-305
Cow position: chr12:30590629-30590330 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 213
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 113, 40

Conread position: 40-281
Cow position: chr12:20283751-20283533 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 63-485
Cow position: chr12:27365466-27365035 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 205

Conread position: 68-463
Cow position: chr12:38678521-38678140 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 84

Conread position: 68-569
Cow position: chr12:37514415-37514888 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 262
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 321, 15

Conread position: 145-447
Cow position: chr12:10939381-10939079 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 220
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 59, 81

Conread position: 168-397
Cow position: chr12:5714188-5713967 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 163, 50

Conread position: 169-579
Cow position: chr12:37358590-37358169 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 355

Conread position: 174-583
Cow position: chr12:21946964-21946553 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 47

Conread position: 206-503
Cow position: chr12:31429851-31430160 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 207-337
Cow position: chr12:7205900-7206030 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 109
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 207-489
Cow position: chr12:36118675-36118392 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 118

Conread position: 208-397
Cow position: chr12:40163249-40163060 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 132
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 208-401
Cow position: chr12:42602533-42602720 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 149
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 138, 0

Conread position: 208-420
Cow position: chr12:39704553-39704340 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 154
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 103, 139

Conread position: 208-424
Cow position: chr12:40807099-40806883 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 168
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 125, 89

Conread position: 208-452
Cow position: chr12:6412404-6412648 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 185
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 183, 9

Conread position: 208-461
Cow position: chr12:3212025-3211769 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 179
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 51, 36

Conread position: 208-465
Cow position: chr12:38111433-38111176 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 136

Conread position: 208-530
Cow position: chr12:16738294-16737985 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 72

Conread position: 208-547
Cow position: chr12:19869174-19868829 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 28

Conread position: 208-583
Cow position: chr12:1773960-1774329 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 102

Conread position: 208-583
Cow position: chr12:18011137-18010760 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 20

Conread position: 208-588
Cow position: chr12:28572406-28572036 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 131

Conread position: 208-594
Cow position: chr12:24755321-24755708 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 136

Conread position: 209-430
Cow position: chr12:27563675-27563903 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 171
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 124, 0

Conread position: 210-441
Cow position: chr12:31949487-31949247 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 163
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 140, 129

Conread position: 210-456
Cow position: chr12:19872141-19871910 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 175
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 210-465
Cow position: chr12:22047186-22046938 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 14

Conread position: 210-477
Cow position: chr12:17472517-17472783 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 198
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 172, 14

Conread position: 210-533
Cow position: chr12:29486818-29486493 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 80

Conread position: 210-583
Cow position: chr12:5800739-5800358 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 121

Conread position: 212-380
Cow position: chr12:12178251-12178081 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 10, 0

Conread position: 218-583
Cow position: chr12:31605232-31605581 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 38

Conread position: 222-583
Cow position: chr12:3950646-3951007 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 119

Conread position: 222-586
Cow position: chr12:17663901-17663525 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 193

Conread position: 223-380
Cow position: chr12:35712459-35712611 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 116, 0

Conread position: 223-450
Cow position: chr12:31947889-31947655 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 180
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 25, 128

Conread position: 224-583
Cow position: chr12:21075753-21075395 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 39

Conread position: 226-401
Cow position: chr12:7977735-7977567 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 48, 29

Conread position: 226-435
Cow position: chr12:19691547-19691763 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 57, 128

Conread position: 226-500
Cow position: chr12:27193039-27192764 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 98

Conread position: 228-389
Cow position: chr12:3160751-3160595 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 117, 0

Conread position: 231-583
Cow position: chr12:7884972-7885295 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 250
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 240, 64

Conread position: 236-482
Cow position: chr12:43944877-43945130 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 175
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 145, 0

Conread position: 288-483
Cow position: chr12:15121719-15121525 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 108, 28

Conread position: 319-583
Cow position: chr12:45802224-45802491 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 201
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 70, 20

Conread position: 322-583
Cow position: chr12:7650998-7651262 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 60, 17

Show alignments to all cow chromosomes.