Cow genome map

Conread name: rpfco0140_i1.y1

Conread position: 1-129
Cow position: chr18:33882769-33882894 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 1-146
Cow position: chr18:19619839-19619695 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 72, 0

Conread position: 1-170
Cow position: chr18:29648672-29648495 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 145, 71

Conread position: 2-121
Cow position: chr18:219220-219104 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 67

Conread position: 2-127
Cow position: chr18:43020506-43020624 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 2-128
Cow position: chr18:25984684-25984808 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 70, 0

Conread position: 2-132
Cow position: chr18:28823081-28823208 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 30, 63

Conread position: 2-138
Cow position: chr18:24945921-24946058 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 30, 66

Conread position: 2-143
Cow position: chr18:21205248-21205116 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 62, 0

Conread position: 2-144
Cow position: chr18:4496000-4496139 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 31, 67

Conread position: 2-144
Cow position: chr18:10656331-10656194 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 62, 0

Conread position: 2-144
Cow position: chr18:13359950-13359811 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 121
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 38, 25

Conread position: 2-144
Cow position: chr18:26586771-26586915 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 30, 80

Conread position: 2-144
Cow position: chr18:31586480-31586616 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 55

Conread position: 2-144
Cow position: chr18:54572406-54572547 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 37, 71

Conread position: 2-145
Cow position: chr18:22790187-22790327 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 2-145
Cow position: chr18:35076271-35076134 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 2-145
Cow position: chr18:50637573-50637715 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 2-145
Cow position: chr18:51178858-51178998 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 10, 56

Conread position: 2-146
Cow position: chr18:267929-268064 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 55

Conread position: 2-146
Cow position: chr18:2099466-2099606 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 61

Conread position: 2-146
Cow position: chr18:2270617-2270757 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 22

Conread position: 2-146
Cow position: chr18:3115349-3115206 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 122
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 30, 69

Conread position: 2-146
Cow position: chr18:3422606-3422467 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 118
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 101, 54

Conread position: 2-146
Cow position: chr18:5578192-5578049 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 2-146
Cow position: chr18:5711781-5711920 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 118
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 34, 60

Conread position: 2-146
Cow position: chr18:7951001-7950860 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 65, 31

Conread position: 2-146
Cow position: chr18:7952536-7952393 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 31, 73

Conread position: 2-146
Cow position: chr18:7956029-7955889 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 2-146
Cow position: chr18:8105060-8105194 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 2-146
Cow position: chr18:9557869-9557725 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 51, 85

Conread position: 2-146
Cow position: chr18:11233319-11233178 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 67

Conread position: 2-146
Cow position: chr18:11691522-11691665 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 71, 0

Conread position: 2-146
Cow position: chr18:11811862-11811726 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 2-146
Cow position: chr18:11867226-11867094 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 2-146
Cow position: chr18:12023749-12023886 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 2-146
Cow position: chr18:12058899-12058764 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 2-146
Cow position: chr18:15880972-15881110 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 2-146
Cow position: chr18:17005143-17004997 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 36, 74

Conread position: 2-146
Cow position: chr18:20174243-20174383 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 30, 69

Conread position: 2-146
Cow position: chr18:20271134-20271273 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 2-146
Cow position: chr18:20998730-20998871 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 2-146
Cow position: chr18:21768517-21768374 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 119
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 39, 62

Conread position: 2-146
Cow position: chr18:22120995-22121135 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 117
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 88, 54

Conread position: 2-146
Cow position: chr18:23447195-23447335 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 122
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 31, 66

Conread position: 2-146
Cow position: chr18:24342507-24342372 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 31, 55

Conread position: 2-146
Cow position: chr18:25282667-25282808 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 111, 62

Conread position: 2-146
Cow position: chr18:29058608-29058749 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 70, 0

Conread position: 2-146
Cow position: chr18:30794320-30794181 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 70, 0

Conread position: 2-146
Cow position: chr18:33407501-33407357 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 55, 72

Conread position: 2-146
Cow position: chr18:35058225-35058087 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 67

Conread position: 2-146
Cow position: chr18:35582215-35582355 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 68, 0

Conread position: 2-146
Cow position: chr18:35827524-35827668 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 57, 30

Conread position: 2-146
Cow position: chr18:36098089-36097947 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 65

Conread position: 2-146
Cow position: chr18:38985577-38985434 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 72, 84

Conread position: 2-146
Cow position: chr18:43283872-43284011 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 36, 18

Conread position: 2-146
Cow position: chr18:46880789-46880936 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 30, 81

Conread position: 2-146
Cow position: chr18:48407679-48407536 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 71, 0

Conread position: 2-146
Cow position: chr18:48453580-48453440 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 64, 0

Conread position: 2-146
Cow position: chr18:49543362-49543225 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 31, 66

Conread position: 2-146
Cow position: chr18:50082364-50082498 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 2-146
Cow position: chr18:52637635-52637781 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 74

Conread position: 2-146
Cow position: chr18:55789104-55789245 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 68, 0

Conread position: 2-146
Cow position: chr18:56163473-56163334 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 53, 0

Conread position: 2-146
Cow position: chr18:56181578-56181708 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 2-146
Cow position: chr18:56183827-56183684 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 71, 0

Conread position: 2-147
Cow position: chr18:7930254-7930401 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 29, 69

Conread position: 2-149
Cow position: chr18:26286796-26286656 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 105, 29

Conread position: 2-149
Cow position: chr18:27388439-27388294 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 35, 73

Conread position: 2-149
Cow position: chr18:34621474-34621623 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 27, 74

Conread position: 2-163
Cow position: chr18:20797985-20797830 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 2-173
Cow position: chr18:42479702-42479875 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 82, 70

Conread position: 2-179
Cow position: chr18:6881462-6881638 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 120, 70

Conread position: 2-189
Cow position: chr18:5647134-5646940 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 152
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 34, 65

Conread position: 2-202
Cow position: chr18:11166866-11166670 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 39, 71

Conread position: 2-203
Cow position: chr18:25647366-25647573 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 146, 58

Conread position: 2-206
Cow position: chr18:46048646-46048452 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 151
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 30, 45

Conread position: 2-218
Cow position: chr18:25206304-25206513 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 148
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 176, 69

Conread position: 2-272
Cow position: chr18:56159347-56159104 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 195
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 30, 55

Conread position: 2-294
Cow position: chr18:19273215-19273493 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 88, 13

Conread position: 2-296
Cow position: chr18:29371755-29371488 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 213
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 33, 60

Conread position: 2-296
Cow position: chr18:49665272-49665536 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 217
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 36, 0

Conread position: 2-300
Cow position: chr18:45395892-45395608 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 215
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 30, 65

Conread position: 2-306
Cow position: chr18:39662665-39662388 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 219
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 37, 55

Conread position: 2-309
Cow position: chr18:29796539-29796825 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 211
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 120, 67

Conread position: 2-335
Cow position: chr18:36445325-36445012 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 229
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 36, 50

Conread position: 2-336
Cow position: chr18:56361717-56362019 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 229
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 10, 0

Conread position: 2-341
Cow position: chr18:34527213-34527531 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 2-366
Cow position: chr18:51537775-51538131 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 245
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 103, 56

Conread position: 2-370
Cow position: chr18:238457-238809 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 253
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 35, 72

Conread position: 2-370
Cow position: chr18:3184054-3183703 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 250
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 6, 55

Conread position: 2-397
Cow position: chr18:39115253-39115640 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 72

Conread position: 2-397
Cow position: chr18:52632515-52632896 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 328, 36

Conread position: 2-405
Cow position: chr18:3180306-3179931 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 282
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 387, 53

Conread position: 2-413
Cow position: chr18:11322489-11322098 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 77

Conread position: 2-433
Cow position: chr18:7947274-7946862 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 293
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 30, 68

Conread position: 2-433
Cow position: chr18:7965117-7964714 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 309
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 160, 20

Conread position: 2-440
Cow position: chr18:33793593-33793175 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 68

Conread position: 2-446
Cow position: chr18:47314403-47314839 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 309
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 31, 72

Conread position: 2-460
Cow position: chr18:28101517-28101097 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 84

Conread position: 2-466
Cow position: chr18:13172630-13173076 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 73

Conread position: 2-466
Cow position: chr18:39875373-39875840 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 67

Conread position: 2-481
Cow position: chr18:8964420-8963957 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 47

Conread position: 2-484
Cow position: chr18:11680610-11680122 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 71

Conread position: 2-506
Cow position: chr18:44262512-44262024 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 53

Conread position: 2-523
Cow position: chr18:45573000-45572490 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 52

Conread position: 2-547
Cow position: chr18:36478085-36477510 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 46

Conread position: 2-557
Cow position: chr18:37023667-37024200 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 71

Conread position: 2-570
Cow position: chr18:13293396-13292853 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 54

Conread position: 2-578
Cow position: chr18:42747482-42746914 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 70

Conread position: 2-581
Cow position: chr18:33275197-33274630 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 64

Conread position: 2-581
Cow position: chr18:33606517-33605989 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 68

Conread position: 2-583
Cow position: chr18:1144297-1144871 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 88

Conread position: 2-583
Cow position: chr18:4316197-4315636 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 72

Conread position: 2-583
Cow position: chr18:7649883-7649329 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 382, 69

Conread position: 2-583
Cow position: chr18:29356741-29357312 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 388, 70

Conread position: 2-583
Cow position: chr18:36458819-36458252 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 67

Conread position: 2-583
Cow position: chr18:42966750-42966170 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 84

Conread position: 2-583
Cow position: chr18:51712815-51713384 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 16

Conread position: 2-585
Cow position: chr18:43564117-43563553 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 38

Conread position: 3-125
Cow position: chr18:1582390-1582515 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 29, 74

Conread position: 3-140
Cow position: chr18:20481987-20482121 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 3-145
Cow position: chr18:4625787-4625643 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 73

Conread position: 3-145
Cow position: chr18:56172131-56172272 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 32, 65

Conread position: 3-146
Cow position: chr18:10575993-10575855 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 3-146
Cow position: chr18:14815451-14815588 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 29, 71

Conread position: 3-146
Cow position: chr18:16417812-16417950 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 3-146
Cow position: chr18:18976976-18976831 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 73

Conread position: 3-146
Cow position: chr18:19761586-19761445 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 38, 71

Conread position: 3-146
Cow position: chr18:20864875-20864730 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 29, 73

Conread position: 3-146
Cow position: chr18:26938870-26938730 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 9

Conread position: 3-146
Cow position: chr18:48290551-48290691 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 120
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 40, 58

Conread position: 3-202
Cow position: chr18:47868345-47868144 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 37, 71

Conread position: 3-291
Cow position: chr18:41270981-41270713 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 212
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 40, 144

Conread position: 3-506
Cow position: chr18:21266402-21265874 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 77

Conread position: 3-583
Cow position: chr18:51212071-51211497 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 83

Conread position: 4-136
Cow position: chr18:37382209-37382341 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 35, 70

Conread position: 4-146
Cow position: chr18:2592284-2592426 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 36, 83

Conread position: 4-146
Cow position: chr18:21721393-21721533 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 55

Conread position: 4-334
Cow position: chr18:21195455-21195757 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 237
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 317, 13

Conread position: 4-583
Cow position: chr18:9365800-9365222 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 69

Conread position: 4-583
Cow position: chr18:28658025-28658577 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 386, 58

Conread position: 5-141
Cow position: chr18:11183828-11183693 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 101
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 5-143
Cow position: chr18:15172915-15172782 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 5-146
Cow position: chr18:5995352-5995219 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 65

Conread position: 5-146
Cow position: chr18:9974441-9974579 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 68, 0

Conread position: 5-146
Cow position: chr18:15025557-15025426 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 31, 51

Conread position: 5-146
Cow position: chr18:39709774-39709637 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 79, 51

Conread position: 5-202
Cow position: chr18:24977460-24977672 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 79

Conread position: 5-338
Cow position: chr18:31626571-31626227 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 246
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 25, 12

Conread position: 5-432
Cow position: chr18:49655589-49655205 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 287
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 230, 51

Conread position: 5-501
Cow position: chr18:33157701-33157204 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 51

Conread position: 8-144
Cow position: chr18:24735002-24734866 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 31, 66

Conread position: 8-146
Cow position: chr18:30673756-30673894 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 68

Conread position: 8-146
Cow position: chr18:51691583-51691721 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 35, 66

Conread position: 9-146
Cow position: chr18:7059108-7058977 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 113
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 58, 0

Conread position: 10-581
Cow position: chr18:32218374-32218919 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 49

Conread position: 12-149
Cow position: chr18:52402640-52402773 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 59

Conread position: 16-557
Cow position: chr18:4578593-4579135 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 56

Conread position: 24-146
Cow position: chr18:40759078-40758962 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 58-502
Cow position: chr18:23137363-23137806 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 13

Conread position: 83-291
Cow position: chr18:36769116-36769317 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 89, 94

Conread position: 158-397
Cow position: chr18:50381763-50381523 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 162
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 74, 41

Conread position: 168-336
Cow position: chr18:11166652-11166488 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 40, 0

Conread position: 184-482
Cow position: chr18:11377103-11376798 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 224
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 18, 53

Conread position: 187-500
Cow position: chr18:36649455-36649135 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 229
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 145, 31

Conread position: 190-583
Cow position: chr18:33883200-33883606 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 128

Conread position: 198-474
Cow position: chr18:48291162-48291437 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 42

Conread position: 207-423
Cow position: chr18:10890959-10890749 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 187, 82

Conread position: 207-470
Cow position: chr18:29759434-29759164 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 194
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 31, 144

Conread position: 208-427
Cow position: chr18:6290493-6290280 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 169
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 125, 100

Conread position: 208-434
Cow position: chr18:31672794-31673026 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 171
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 123, 61

Conread position: 208-436
Cow position: chr18:30186200-30186438 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 182
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 103, 144

Conread position: 208-461
Cow position: chr18:13877020-13877280 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 186
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 125, 0

Conread position: 208-466
Cow position: chr18:25164824-25165078 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 196
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 184, 87

Conread position: 208-515
Cow position: chr18:4950261-4949959 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 143

Conread position: 208-579
Cow position: chr18:33272654-33272288 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 18

Conread position: 208-582
Cow position: chr18:54027651-54027273 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 54

Conread position: 208-590
Cow position: chr18:9974616-9974985 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 56

Conread position: 209-469
Cow position: chr18:21721572-21721833 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 193
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 181, 136

Conread position: 210-396
Cow position: chr18:19850037-19850219 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 147
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 66, 134

Conread position: 210-467
Cow position: chr18:19193639-19193896 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 193
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 186, 17

Conread position: 210-547
Cow position: chr18:13508020-13508368 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 14

Conread position: 210-583
Cow position: chr18:27833372-27833748 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 128

Conread position: 210-583
Cow position: chr18:33299607-33299238 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 10

Conread position: 212-446
Cow position: chr18:9066425-9066193 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 12, 136

Conread position: 212-583
Cow position: chr18:19115751-19116128 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 131

Conread position: 212-583
Cow position: chr18:19645884-19645507 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 132

Conread position: 212-593
Cow position: chr18:29768619-29768232 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 228

Conread position: 214-572
Cow position: chr18:9007852-9007506 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 132

Conread position: 217-513
Cow position: chr18:37690898-37691194 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 18

Conread position: 221-475
Cow position: chr18:25206602-25206856 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 192
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 169, 104

Conread position: 221-583
Cow position: chr18:9089401-9089055 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 26

Conread position: 222-387
Cow position: chr18:21185025-21184865 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 124, 0

Conread position: 222-497
Cow position: chr18:35751959-35752233 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 211
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 166, 12

Conread position: 223-542
Cow position: chr18:3158906-3159220 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 226
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 85, 103

Conread position: 223-588
Cow position: chr18:17334701-17335071 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 257
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 109, 134

Conread position: 224-478
Cow position: chr18:51500387-51500653 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 189
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 108, 26

Conread position: 226-583
Cow position: chr18:871499-871136 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 117

Conread position: 229-482
Cow position: chr18:44484364-44484608 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 184
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 242, 117

Conread position: 254-583
Cow position: chr18:27457093-27457421 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 26

Conread position: 263-497
Cow position: chr18:52792297-52792062 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 126, 5

Conread position: 300-504
Cow position: chr18:53962783-53962996 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 33, 0

Conread position: 313-485
Cow position: chr18:45104823-45104997 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 77, 30

Show alignments to all cow chromosomes.